Array 1 40838-40506 **** Predicted by CRISPRDetect 2.4 *** >NC_020894.1 Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40837 29 100.0 32 ............................. ACAAGAAGCGCATCAACAAGGCCGCCAAGAAG 40776 29 100.0 32 ............................. ATGACCACGACCATCCACGCCCCCGCAACCCG 40715 29 100.0 32 ............................. GCCGCAGCCTCCACCCTCGTCTTCGAGGCACT 40654 29 100.0 32 ............................. GAGGTCATCGCGGCCGGTGAGCCCGCCACGTG 40593 27 89.7 32 ............--.....A......... GCCCCGGCCAGTCGGCTCGGGGTGTGGTGGGT 40534 29 72.4 0 ............G.C.......GCACA.G | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.7 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CGACCGTGGCCAACATCTGCCCTCGGGCAGGAACTACAGCAGCCTCAATGAGTTCACCGGCGAGGCGGTGCTCTGGTGACCGTGATCGTTCTGACGAACTGCCCAGCCGGTTTGAGAGGGTTCCTCACCCGCTGGATGCTTGAGATTTCAGCCGGCGTCTTCATCGGCAACCCGAGCACCCGCATCCGAGATGTCCTGTGGAGCGAGGTGCAGCAATACACGGATCAAGGCAGGGCCCTCCTAGTACACACCACCAACAACGAACAGGGCTTCACCTTCCGCACCCACGACCACGCATGGAAGCCGGTGGACCACGAGGGACTCACCTTGATCCAACGACCGAAGACCAATCCGCCACCGGCACCGGCCAAGGCGGGTTGGAGCACAGCCTCAAAGAGGCGTCGATTCGGCAAGCGTTAGCCCATATGCGCAGTACGCCGGAATAATTGAAAGTCATAGAAACACAGACTTCCAAGCGCCATACCCGCAGGCCATCGAGT # Right flank : AGTCGGGCTGTACGCCGAAGGGCTCAAGGAGGTGTACTTCCAGGACAGCGGCCGCCGCGCCGGCCAACTGGAGGAAGTCCGCTTCACCGACATCGAGCACCTCGAGTTCGACCTGTAGCAACCGCGCCCCGAACAGCCTGCGAGCCCGGACCAGTTGGTCCGGGCTCGCTCGCGTATCCGCGGGGGGTCGGATTGATGCACGCGATGCCCTGTTCAACGCCGTCCCGGCGCCGCCGGTTACGGTTCGCCGAAGCCGTGCTCGAAGCCCTTGAGGACGGGGTCAAGCTCGGCAGCCGCGCCGCACAGCGAGCACAGCCGCAAGCCCGGCTGCTCTGCTACGTCCAACGCCCGCTCCAGCGGCAGCACCGGCGCCCCGGCCGACGCCTCTTCGCAGTCGACGGCGTGCACGACACCGCGCCGGCCGGGACCACGGCCGCCGGCCTTCGCCAGCATCCAGCCGGACGGCCGCCGTGGCCCCAGCGCCTCCTGGACGGGCGAGG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50724-53190 **** Predicted by CRISPRDetect 2.4 *** >NC_020894.1 Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 50724 29 100.0 32 ............................. CGCCTGGTTAGCGTCGACGTTACTTTCGAGGT 50785 29 100.0 32 ............................. CGGTGCTAGAGCCGCCCCCACTACCCACTACC 50846 29 100.0 32 ............................. TGTTGCAGGCGACGGCGCAGGAGATCGTGGCT 50907 29 100.0 32 ............................. GTCACACAGGTGATCAGGACCGTCTTCCTCGC 50968 29 100.0 32 ............................. AGCATCGATCGCAAGCCGTGCTCGAAGCGCCG 51029 29 100.0 32 ............................. CCCACGAAGCCCCCGTCCGAGTCTGGGCGGGG 51090 29 100.0 32 ............................. CAGCTCGGCGCGCAGGAACGGTCCGGGCTGCG 51151 29 100.0 32 ............................. CAGTCCAGGCCGTCCTTGATGTGACCGACCGT 51212 29 100.0 32 ............................. GAGGTGAGGCTCGTCGGCCAGGGCGCCGGCAA 51273 29 86.2 32 ...........AGG..G............ CAGCGTCCCGGACCGTGCAAGATGCCCCAGTC 51334 29 82.8 32 .......T..AAGG............... ACACCCCACCCCATCCACAGCAGTCAGGAAGA 51395 29 86.2 32 ..........AAGG............... GAGTCCGGGCTGTGGGCGTTGAAGGGCTACAA 51456 29 93.1 32 .............GT.............. GTCGACGTCGCGTTCGTGCCGCGCTCCGCGTT 51517 28 79.3 32 ..A.....T....GT........-.C... ACCTTGACCTTGTCGACCTTCATCTCGAACAG 51577 28 89.7 181 ............TT...........-... TGGGTCAGCCCTTGAGGGCTGGGCCGCTTCCGCCCGCGCCCGTAGAGGCTGCCGCTGAATCCTCGTCGCATTGACGGGTGACGGCAGTCCGTCTTGGAAGCGTGCTTTGGGTTGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGTCGATGGCGCAGTAAGAATGCAGGTCAGTGAGT C [51587] 51787 29 93.1 32 ........................A...G CCGCCCTGCCCCGCCTGAGCGCGAACGTGCCG 51848 29 96.6 32 ........................A.... TGCGGGAGGCCATCCGCCGCGCTGTCTGTGAG 51909 29 96.6 32 ........................A.... AGTTGCAGACGCTCCCGCTCGCCGCTCACCAG 51970 29 96.6 32 ........................A.... CCCGCCGCGCTCGCCCTGGCCACTCTGGGCAT 52031 29 96.6 32 ........................A.... ACCGTCCAGTCCAAGTACACAGCTCCCTACCG 52092 29 96.6 32 ........................A.... CTGAACTTCGGCAAGGCGGTCGGTGCACGCTG 52153 29 96.6 32 ........................A.... CAGGCGGCGCGCACCGTCGCCGACACCCACGA 52214 29 93.1 32 .................A......A.... GAGCTGTGCACCGCCACGATCAACGACCGACG 52275 29 96.6 32 ..............T.............. GGTACTCGCGTCAAGGCGCGCGGGTCAGGCGT 52336 28 86.2 32 ...........AGG...-........... ACCGCCAACGTGGTGGCCGAACGGCTGCGCCC 52396 29 89.7 32 ...........AGG............... TGGCGGTGCATGCCCGTGCTCACCGGCGCCAG 52457 29 93.1 32 .......................T.C... GATACCAGCAATCTCTGTGAGTCGGCGTCCCG 52518 29 89.7 8 ............T..........AA.... GGGGTCAG Deletion [52555] 52555 29 93.1 70 ......AT..................... TTCCTTGGCTGGCCGCCCTGTTGGCGGTCATTGGTCCCGTGATTTCTGGGTCGGGGTTCGCCAATGACAG C,GACA [52557,52566] 52659 28 82.8 130 .......T.....AT.T.....-...... CCGCGCCTGGGTACCGCCGGCCCGGGTGGGCCGTGCTCCCCACCTCGCGACCCAGGTGCGGTGCTCTCCCGTGCGTGTGGGGTGGCTCTGAGCCGGCTGAGCTGGCCATCTGGACAACGTTGGAAAGTGC 52817 29 79.3 133 ..C.........G............GATG GGGATACTTCCCTCGTCGGCGATGCATGCAGCGGGTTGCCGCCGCATCGTCATCGCCGAAGGCAGAGGCTGGGGATTCGGTGAAACTCGCGAGTGTGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT A [52827] 52980 29 89.7 32 .C...........GT.............. GGTCAGGAACGCGGCCACACCGACGCCCCGAA 53041 29 89.7 32 ..A..........GT.............. GTCTTCTCGATCATCTCGTCCGTGTTCACCGC 53102 29 82.8 32 ...T........TGT......G....... CCAGGGACCGCGTCGTCAGCGGCCACACCCCG 53163 28 86.2 0 .............GT..-..........T | ========== ====== ====== ====== ============================= ===================================================================================================================================================================================== ================== 35 29 92.6 43 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TCGTACTTGGCCCACACGCGCTGCGCAGCTGCAGACAAGCGACACGACAATCCCGACTCGCCGTACTCCCCCACACATGCCACACGCAACAACTACAGGCCCACCCCGCCCCTCATCCTGCTTTTCCGGAAAACCAACCGGACTTCCCACTGGCGCTGTACGCACAGAAAGCACAGAGGGCCGTCCCGCCTGACAACCTCGACTCCGCGTAGCCCATCGAGCGGCAGCCATCTCCCCAGCAGCGCCAAAGATGGTCATGCCGTAGATGGCAATGTCCGCTCTTGGTGACGTGCTCGCCGCCCGCGGGGAGGCCCGCCGCCCTTCGGCCGTCAGCGCCGAACGTCCGGCCGTGACCCCACAGGTGCGGATGCCGCCTCCCCCTCATCGCGTGGGAGGATGAAGAATATTTGCCCTGTAAGCATGTTTTGGCCTGTATGCCGGATTCGGCAAAAGTCATGAAGAGGAAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT # Right flank : TCAGGGTTGGGGCTGCGAGCGGCGTGAGTGGACCTCAGATGAAGCTCTGACTTCGTCATCTCTGGCATGGCGAGCACTCGGTTAGGTCAAGATGCCCGCCATGAAGCGGTTGAAGAAGGTCAGCCTAGTCATCGCCGCCCTTGGTCTAGTCATCGGTTACGGCGTCCTGCTCTGGAAGGGACCTTGGCTGTTCGACGGCAGCCACGTTCGAAAGCGCGATCTCCAGCCGGCCGACGGAGTCGTCATCACCGGGTTCCGTACCATGGTCGTCGCAGTCGGAGCCGGGACCATCGCAGCCATCGGCCTTTGGTACACGCACAAGAGCCATCGGCAGACAGAGGAACTGTTCCGACACACACGACGCAAAGATCAAGACCAAGCCGACCTGACTCGAGAAGGGCAGGTCACAGGTCGCTACGTGGAGGCGATCAAGCTCCTGGCCTCTGACAAGCTCCATGAACGGCTCGGCGGTATCTACGCCCTCGAGCGAGTGATGGCGG # Questionable array : NO Score: 4.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-1.03, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [13-49] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 55197-55713 **** Predicted by CRISPRDetect 2.4 *** >NC_020894.1 Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55197 29 100.0 32 ............................. CCGCTCAGCTCGCACCGCCGGGCGGCGCGGAC 55258 29 100.0 32 ............................. CCATCAGTACTCCCGACAGAGCCCACCGGTTC 55319 29 100.0 32 ............................. GCGGGTGCCAATGTCCTTGCTCATCAGGGGTT 55380 29 100.0 32 ............................. GACATGCGCTCGCCCCTGGAACGGCAAGGGCG 55441 29 100.0 32 ............................. CAGGTGCGTGCACGGCGCGTGCAGTGGGCCGG 55502 29 100.0 32 ............................. AAGGTGACGAGCTGGCCCGGCCTGCTCGCCGT 55563 29 93.1 32 ..........C..A............... CAGTTCATCGTCGGCGTCCGCCAGGACATCAC 55624 29 93.1 32 ...T......C.................. GACACCCTCGGCTACAACCAGTTCGCCACCAA 55685 29 82.8 0 ..........CGCC............G.. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGCTCCCCGTAGGCGCGGGGATGGTCCC # Left flank : GAATCGGGGGTGTCGCATGCGACACGCCCGCGACACCACCAGCTGCGGCGGTGTCGGCGCGGCATCCAACCCCAGCTCCTCCGCCAGCAGCATCTGCTCCCGGCATGTGCGGGGATGGTCCCAAGTACGGCGGATACGCGTACGGGTCCGATCCTTGCTCCCCGCGCCCACGGGGATGGTCCCGGAGCATTGCCATGCTCAAGATCGAGGTGAAGGTGCTCCCCGCGCACGCGGGGATGGTCCCCGGGCCCGGTCACCTTCCAGTCCCTCGTCCAAGTGCTCCTCGCGCCCGCGGGGGCCGGCGCGGGTCGCCGGTCCACCACATCCGCGAGGCCGACCGGCTGGCCGTGGCCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGCCCGTCTTGAAAGTGTGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT # Right flank : CGGGGCACCCTTCGCTGTCGGCAGCGTCTGGACGTGTTCCCAGTGCCCGCGGGGGCCGGCGCGGGTCGCCGGTCCACCACATCCGCGAGGCCGAACGGCTGGCCGTGGGCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGCCCGTCTCGAAAGTGCGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGTGTGCTCCCCGCGCCCGCGGGGATGGTCCCCTCGACGGGTTCGCCGAGAAGGTGCTACACCCGTGCTCCCCGCGCCCGCGGGGATGGTCCCCCCATGGCTTGGTTCAAGGACGTGGACCTGGAGTGCTCCCCGCGCCCGCGGGGATGGTCCCCCCACTCTGGCACTGTTTCAGGCCATTGCGTAGTGCTCCCCGCGCCCGCGGGGATGGTCCCGACTTCCCGCGAAAGTGTTGCGAACCTAGGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGTAGGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 55970-57625 **** Predicted by CRISPRDetect 2.4 *** >NC_020894.1 Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================================================== ================== 55970 29 100.0 32 ............................. CTCGACGGGTTCGCCGAGAAGGTGCTACACCC 56031 29 100.0 32 ............................. CCCATGGCTTGGTTCAAGGACGTGGACCTGGA 56092 29 100.0 32 ............................. CCCACTCTGGCACTGTTTCAGGCCATTGCGTA 56153 29 100.0 32 ............................. GACTTCCCGCGAAAGTGTTGCGAACCTAGGGT 56214 29 100.0 32 ............................. TCCGGTCGTGCACGACTGCGCCGACTGCGGAC 56275 28 96.6 32 .................-........... GGCCACAATCGCGACCTGTTCGAGAACAAGGC 56335 29 100.0 32 ............................. GCTCCTAGGTGGGGTGCCCGCCGGGGACGTGG 56396 29 100.0 32 ............................. CACGCTGGGACCTCACCCTCGGCGCGGCCTCC 56457 29 100.0 32 ............................. GCCACGGCCTCCCGGCCGGAGAGCTTGTGCCG 56518 29 100.0 32 ............................. GCGTCGTAGAGGCGGCGATCGTTGCTGCCCTG 56579 29 100.0 32 ............................. CTGCCTGAGGGGGTCCCCTATCCGAAAGAAAC 56640 29 100.0 32 ............................. GGCAGACCAGGGCGATGCGGGAACTGTCCCGG 56701 29 100.0 32 ............................. GAGGTCGCCAGTCGAACGGCACCGACTTCACC 56762 29 93.1 32 ..............T...........T.. GGGACACCCTTCGCTGTCGGCAGCGTCTGGAC 56823 28 75.9 195 ........A.T.......A..CC..-.G. GGGTCGCCGCTCCACCACATCCGCGAGGCCGAACGGCTGACCGTGGCCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGACCGTCTCCAAAGTGCGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGTCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT A [56841] 57047 29 100.0 32 ............................. GACGTGCTCACTTGGCGATCTCCTTACGGGCG 57108 29 100.0 32 ............................. GACGAGGTAGTCACCCTGGTCCGGATCCGTCG 57169 29 100.0 32 ............................. ATCGAGAATCATTTCGTCGTCGACCCCGCGAA 57230 29 100.0 33 ............................. CCCACGAAGCCCCCGTCCGAGTCTGGGCGGGGG 57292 29 100.0 32 ............................. AGGTTCCCGTACTGGCGGAGCGGCAGGCCGAA 57353 29 100.0 32 ............................. GTCTGGCCCAACTGGTGCCAGGATCATCCCCA 57414 29 100.0 32 ............................. CAAGGTGTCAGCACGAGACACAGGGGAGGCCA 57475 29 96.6 32 ...............A............. GGCGGCCAGTGCGTTGAGGTCGCCACCAACCT 57536 29 100.0 32 ............................. CGGGCCCGGTCACCTTCCAGTCCCTCTTCCAA 57597 29 89.7 0 .......T......T...........G.. | ========== ====== ====== ====== ============================= =================================================================================================================================================================================================== ================== 25 29 98.1 39 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CAGGTGCGTGCACGGCGCGTGCAGTGGGCCGGGTGCTCCCCGTAGGCGCGGGGATGGTCCCAAGGTGACGAGCTGGCCCGGCCTGCTCGCCGTGTGCTCCCCGCAGACGCGGGGATGGTCCCCAGTTCATCGTCGGCGTCCGCCAGGACATCACGTGTTCCCCGCAGGCGCGGGGATGGTCCCGACACCCTCGGCTACAACCAGTTCGCCACCAAGTGCTCCCCGCGCCCGCGGGGATGGTGCCGGGGCACCCTTCGCTGTCGGCAGCGTCTGGACGTGTTCCCAGTGCCCGCGGGGGCCGGCGCGGGTCGCCGGTCCACCACATCCGCGAGGCCGAACGGCTGGCCGTGGGCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGCCCGTCTCGAAAGTGCGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT # Right flank : CGGGGCACCCTTCGCTGTCGGCAGCGTCTGGACGTGTTCCCAGTGCCCGCGGGGGCCGGCGCGGGTCGCCGGTCCACCACATCCGCGAGGCCGAACGGCTGGCCGTGGGCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGCCCGTCTCGAAAGTGCGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGTGTGCTCCCCGCAGGCGCGAGGATGGTCCCACCGCGACCTTCCGGTGGAGGGCGTGCAGTTCGTGCTCCCCGCAGGCGCGAGGATGGTCCCGGCCGCATCACCGGCCCCGGCTTCGAACTGCGGTGCTCCCCGCAGGCGCGAGGATGGTCCCTGACCGCAGGCCGCCGCCACGTCGCGCGCCTTGTGCTCCCCGCAGGCGCGAGGATGGTCCCGACGCGCTCGTGAAGGTGGCCAAGCAGTACC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 57882-58763 **** Predicted by CRISPRDetect 2.4 *** >NC_020894.1 Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57882 29 100.0 32 ............................. ACCGCGACCTTCCGGTGGAGGGCGTGCAGTTC 57943 29 100.0 32 ............................. GGCCGCATCACCGGCCCCGGCTTCGAACTGCG 58004 29 100.0 32 ............................. TGACCGCAGGCCGCCGCCACGTCGCGCGCCTT 58065 29 100.0 31 ............................. GACGCGCTCGTGAAGGTGGCCAAGCAGTACC 58125 29 100.0 32 ............................. TACGAGAACGGCCGCTCCGAGCCGAAGTCGCC 58186 29 96.6 32 ..................G.......... GACCCTGGTACCGGATCACCGACCGGTACCAG 58247 29 96.6 32 ..................G.......... GCGACTCGGGCCGCCATCGAACGTGCCGAGGC 58308 29 93.1 32 A.................G.......... GAAGGCGCGATGGCCGGACGCCGGGCGATCGA 58369 29 89.7 32 ..............G...G.A........ CCGCCGACGATCAGGCCGAACGTGCCGGTCAG 58430 29 93.1 32 ..................G.........T GCGGGTGGGTCGCCGCCGACCGGCGCACCGCC 58491 29 86.2 32 ......T...........G..GA...... GACTCTGGGACCACGATGGTGGTCAACGTCCT 58552 29 86.2 32 .......T...GCC............... CATTTCGATCCAGAGCACGCCGGCCGCCGCCA 58613 29 79.3 32 ...........GCC..T.G.........T GCCCTGCACCACCACCATTTCGTCGGCCGGCG 58674 29 86.2 32 ...........GC.T...G.......... ATCACCCCCGTGCCGAACACGCCGACGTCGGT 58735 29 79.3 0 ...........GC.T...G.......GG. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 92.4 32 GTGCTCCCCGCAGGCGCGAGGATGGTCCC # Left flank : GTCTGGCCCAACTGGTGCCAGGATCATCCCCAGTGCTCCCCGCGCCCGCGGGGATGGTCCCCAAGGTGTCAGCACGAGACACAGGGGAGGCCAGTGCTCCCCGCGCCCACGGGGATGGTCCCGGCGGCCAGTGCGTTGAGGTCGCCACCAACCTGTGCTCCCCGCGCCCGCGGGGATGGTCCCCGGGCCCGGTCACCTTCCAGTCCCTCTTCCAAGTGCTCCTCGCGCCTGCGGGGATGGTGCCGGGGCACCCTTCGCTGTCGGCAGCGTCTGGACGTGTTCCCAGTGCCCGCGGGGGCCGGCGCGGGTCGCCGGTCCACCACATCCGCGAGGCCGAACGGCTGGCCGTGGGCCTCACAGGTGCGGCTGTCGCCGCGTGCTCACATGGCGTTGGCGGTGACGGCAGCCCGTCTCGAAAGTGCGCTTCGGTTGGTATGCCGGATTCGGTGAAAGTCATGGAAGAGGAGCCGATGGCGCGGTAAGAATGCAGGTCAGTGAGT # Right flank : CTCGAGGGCGACGGGCGGCGAGAATGTCGTCGAACTGGGCGAGGACGCTGCCACCGGCGGCCGGGCGACCATGGCGCGCTCGGTCATCATCATGCGGATCGCGCTGCCGAGCCCGAGCGGCTCGCGGCCGTTGTGCCGTACGACCGTGCCAGTGCGCCGCTTCGGCTTTTCCTTCCGGGCGGCCTCCGTTCTTCCGTGCCGCTTCCCGGGTGGCGACCAGGGCTTGGCGCGCGAGGTCGACTCTGCTCAGCTCGGTGCTCACGCGATCACCGTCCGGGCCGTGTCGCTGTCCAGCGGGCGGGCGGCGAGTTCGGGCAGCCGGTCCGTCCACGGCGTGGGTACGGCCGCCTCGGTCCGGACGGCCGCCCACTCGCGCAGATGCTCCAGCCGCGTCGCCAGCAGGTACTGGGCGGTGCGCTCCCGGGCGGCGTCGGCGGCCTTGGTCGCGGCCGCGATGGCGTCCGCGCTGTGCGGGTTGTGCTTATACCAGCGGCGGCCTT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGAGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //