Array 1 18657-17892 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYXI01000002.1 Bacillus safensis strain GCID_CRE_0021 GCID_CRE_0021_NODE_4.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 18656 32 100.0 35 ................................ ACCTTGTGTAACATATAGGTAATCCATTGGGAACT 18589 32 100.0 35 ................................ CCCAAAATATACGCCCCTGCTCTGGTGGGTATATG 18522 32 100.0 36 ................................ AATTCAATATCAAACTGTACATCAACAGTTCTCACA 18454 32 100.0 36 ................................ CGGCAATTCCATTTGATCTGCTTTTATGAACAAAGG 18386 32 100.0 34 ................................ GCTTTTTAAGCCATTATTTTCACTCTTTAAAGTG 18320 32 100.0 34 ................................ TCTCAAAAAATTATGCAAAGACTTCGGAGTCGAT 18254 32 100.0 35 ................................ CCACTCTTTCTGCTTTTCTATGAAGTCGTTCGGTT 18187 32 100.0 37 ................................ TCATTCGCTGTAATTGCAGCCGCAGCAGTGTTAGCGT 18118 32 100.0 33 ................................ TCGATTCCTTTTTATCAATCGCAGGCAATTCAC 18053 32 100.0 34 ................................ TCGTTTGGATGGACGAAAAGGACAGGTTCAAATA 17987 32 93.8 33 .........A..........A........... GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGT 17922 31 71.9 0 A........A....A.....A.A.-..C.C.G | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 97.1 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTTAGCGCTTTCTACGTCACATTTTCTAATTGCTGTCGCACTCTACATGAGTGCGTGGGTTGAAATCTGAAGCGTCGCTGACTTTTTTGGTCAAAATAGGTCGCACTCTACGTGAGTGGGTGGATTAATAATTGCGAAAACATAACCCTGCCTCCTGCCTCAGTAGTCATGAATCTAAGTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGGGTGAAAACAAAATTCTATATAGAAACTTAAGGATTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTTCTGCGAATTACATAAATTCAAATATCTATCCACCTAAATCCAAGCTCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAATGACCTTTGCTGCGGTAGCGTAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATATTTTCATCTTGCTTAGCAATTTTCATAATTTCAGTATCAGGGACCGGCACTCGGTTAAAGGTGTCTAAAATGACGACTTCTCCATTCATGCTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATGATAATCTCTTCAATTTCATCGAATCGTGCACGCAGTT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 27326-26763 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYXI01000002.1 Bacillus safensis strain GCID_CRE_0021 GCID_CRE_0021_NODE_4.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27325 32 100.0 36 ................................ AACAAAGACGGTGTTTTGATTACACCAAACGGTGCC 27257 32 100.0 35 ................................ TTTAAAACGTGATTCTTTCCAATAACGTTTACTAG 27190 32 100.0 34 ................................ CTCTTGTAATGCGAAAACGAGGAATGACCTTACT 27124 32 100.0 33 ................................ ACATTCAAAATCGCAAGCTGTATCGTTTTCAAA 27059 32 100.0 34 ................................ TATCAAAAGTGGAGAATACAAGTATCGTTATATA 26993 32 96.9 34 ......................A......... TGTCATAGAACGCAATTTCTCATCAATACTTTCG 26927 32 93.8 35 ...................T.........T.. ATGAGCTTTGTAGGGTTAGAAATGTAATCCCACAC 26860 32 96.9 34 ...........T.................... TGTTTTGCTTGAGCGTTCGGAAAGTTGAACACAG 26794 32 84.4 0 ..................T...AAT..T.... | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 96.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TACATGAGTGCGTGGATTGAAATATTGGTTAGACGGCCAGTTTCAAAGTCGATTCGGTGTCGCACTCTACAAGAGTGGGTGGATTGAAATGATAATAGCCGGCAAGCTGCTTCGTTTGGTACTCGTCGCACTCTATATGAGTGTGAGGACTGAAATTCTCGTCAATAGGTGGCTTGAAAAATATATTGACAATTGTGCTTGATTTAGGTGTGAAAAACATAACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAACCTGTTGATGAAATAATGAATAAGTACCTTTAGAGCAATAGTTTTTAATTAAATAGGAGTAAGAAAAATTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGAGGCATTCGCACCTTTTTATTCGACAAAACTGGGTAAAAATGTATATTTTGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTTCTAAAAAATGTTACAATTAGGGCGGAAATCGCA # Right flank : GATTATGTCTTAAACGGGTATGTCTCAGAGATCATGATCTTACAACACCCTCTTTCAGATACAAAAGCCATCAAAATAGACTGTTCATATGTATAGTGAAAACATGACTCATTGCAGTCATGTTTTTTTTCTTCTTTTTCCTAAATAAACCTAAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAAAAAATGAAGGAGGAAATGGTTTGGGTGAAACGAAGCAAACCAGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGACTGACAGGGGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAGCAGTATA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 28368-27670 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYXI01000002.1 Bacillus safensis strain GCID_CRE_0021 GCID_CRE_0021_NODE_4.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28367 32 100.0 33 ................................ ACTGCTCTTTCTAGTGATGCATACGTGATCGGT 28302 32 96.9 35 ........T....................... AAGTTACTCTGACGATAGCATATCGAATCAAGGTG 28235 32 100.0 34 ................................ CATTAATGTGTAGAGATGCACCCCATCTCCTAAA 28169 32 100.0 36 ................................ TACAATGTGGCTGGGCTTTAGATATAAACGGTAACC 28101 32 100.0 35 ................................ AATTACTATTAGTAATTTATCCAATCATAAACACC 28034 32 100.0 35 ................................ ATCAAGATCGATCTCATGACTCTCAGATACTGCTC 27967 32 100.0 35 ................................ AATAAGTATGTGGAGCCAGTCCTTAAAGAGTTTTT 27900 32 96.9 34 .............A.................. TTCACTCACTGTACGCGGTGACTCTTTCGGGAAA 27834 32 100.0 35 ................................ ATTGGTTAGACGGCCAGTTTCAAAGTCGATTCGGT 27767 32 93.8 34 .............A.....G............ GATAATAGCCGGCAAGCTGCTTCGTTTGGTACTC 27701 32 87.5 0 ...........T.......T.A...C...... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 97.7 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGAGGCTCTTGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCGGAAATCGCA # Right flank : TCTCGTCAATAGGTGGCTTGAAAAATATATTGACAATTGTGCTTGATTTAGGTGTGAAAAACATAACTCTGGCTCAGTAGTCATGTTTTTAAATGAATTCAAACCTGTTGATGAAATAATGAATAAGTACCTTTAGAGCAATAGTTTTTAATTAAATAGGAGTAAGAAAAATTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGAGGCATTCGCACCTTTTTATTCGACAAAACTGGGTAAAAATGTATATTTTGTGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTTCTAAAAAATGTTACAATTAGGGCGGAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAACAAAGACGGTGTTTTGATTACACCAAACGGTGCCGTCGCACTCTACATGAGTGCGTGGATTGAAATTTTAAAACGTGATTCTTTCCAATAACGTTTACTAGGTCGCACTCTACATGAGTGCG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //