Array 1 472978-469100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH597773.1 Leptonema illini DSM 21528 Lepilscaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 472977 29 100.0 32 ............................. TACATATTCGTAGGAGCTAACACGCTGTCATG 472916 29 100.0 33 ............................. ACTACATAGCGCACCGTAAGCAGGAGGTCGCGT 472854 29 100.0 32 ............................. TTTCCGGCTCTTTATGCTGCACTCGATGAATA 472793 29 100.0 33 ............................. CCTTTTGGTTATACAGAGATTTCGGTATACGTA 472731 29 96.6 33 ............................A GACAATACATTCGCCATCTCAACTGTTGATGGC 472669 29 96.6 32 ............................C TCTCACCGGTTGACCCTTGCCGAAATCACTGA 472608 29 100.0 32 ............................. GCCGCTGTTGTTCTGCGCGTAGCGCAGTGGGC 472547 29 100.0 32 ............................. CAAACCTGAGCGTCTCGATCTCCTCATCTGTC 472486 29 100.0 32 ............................. AGGTCGAGAAAGTTGCTAAAAAGGCAACCAAA 472425 29 100.0 32 ............................. CTCACGGACGGAGAAAAGAAAACGATCGTTTT 472364 29 100.0 32 ............................. CGCGCCGCACGCGACTGGTCCGACTCGAAGTC 472303 29 100.0 32 ............................. TATTCCGGCGGAAGCTATCTTAGCTTTGGCAT 472242 29 100.0 32 ............................. CTTGTCTCCTCTGAGATTGACCGAATTCTCGG 472181 29 100.0 32 ............................. TATGCTATTCTGTGGCATGGATTTACGAGCAC 472120 29 100.0 33 ............................. GCCTTCCGTGAACTGGTTCAGCGCCCCGTCCAT 472058 29 100.0 32 ............................. TATAACATCATTATCGAGGACTTCATTCTTCC 471997 29 100.0 32 ............................. CAGGAGGTCGCGTAATGGCTATCACAGAACGA 471936 29 100.0 32 ............................. CCCTCCAGAGGTTGGAAGACCTTTCAGATCCA 471875 29 100.0 32 ............................. CGACAGCACACCGCCGGAAATCCCGCCGAGCT 471814 29 100.0 32 ............................. TCATGTATGTATTTACGACTCTATGGGGATAC 471753 29 100.0 32 ............................. CCTAATCCGCCGGCGATAAATGCATATACGAT 471692 29 100.0 32 ............................. AGACTCGGAAGAGTAAGACTGAGGCTGACTAT 471631 29 100.0 32 ............................. TCGTCAGGCATCATAATGGGGGTAGGGGCAAC 471570 29 100.0 32 ............................. TCCTGCGATGAGCCCAGACTTCGGGTCATCGA 471509 29 100.0 32 ............................. CACTCCGCAATTTATCCGTAACCCTTGAAACG 471448 29 100.0 32 ............................. CTGCCGGGCTTGAAAAGCGCATCCGGAAAGCT 471387 29 100.0 32 ............................. AGTATCAGAAGCAGGGGCAAACCGCCGCTTTG 471326 29 100.0 32 ............................. CCTTTGATTTAAAGTGGAAACAAATAGAAGAT 471265 29 100.0 32 ............................. GTTAAACGAGCTCATCGATAGAGCCCGCGAGT 471204 29 100.0 32 ............................. CCGTGGCCGAATGGAGCATCGCCAGAAGACGC 471143 29 100.0 32 ............................. AGTCTTCGAATACTCGCGGACGCCCCGAAAGT 471082 29 100.0 32 ............................. TCGAGTTTAAATTGGTTGACCACCTCGGCCGA 471021 29 100.0 32 ............................. TACGATCCTCAGCCCCTCATAAAGGCGTACAT 470960 29 96.6 32 ............................T GCCCGAGCTCATCAAACCCCACAAACTGGAAC 470899 29 100.0 32 ............................. TCACCGGTAGGAAGATAAAACAGATTCAGATT 470838 29 100.0 32 ............................. GGCACAACTAAACCCCAGGAGGCTTAATTATG 470777 29 100.0 32 ............................. GGCGGCCTCGTCCTCGAATAAAAAAAGAAATT 470716 29 96.6 33 ............................A GACAAGTCTATTAAGTTAACCAAAAGCGGAGAG 470654 29 100.0 32 ............................. CGAGCGACGTCGTTCGGGATGCTCGTGCGGTC 470593 29 100.0 32 ............................. CGCCCTCGATCAAAACTATTCAAGAGAAGTTC 470532 29 100.0 32 ............................. CGCTCGACTGGTGGAAAAAATGGAAACCCCGA 470471 29 100.0 32 ............................. CTTGAAACGCACGTAGTCGCCGATGAGTTCGT 470410 29 100.0 32 ............................. ACACCGCAGAAGCAGCGGGCGCCGGCGCAATC 470349 29 100.0 32 ............................. TTTTTCGCCAGCAACGTCCGGGTAAAACTGAG 470288 29 100.0 32 ............................. CGATCGGCGGATAACGGTTGCGGAGTCCGTTA 470227 29 100.0 32 ............................. TTCATTGGACCATTCAGGATGAAGAATAGCAA 470166 29 100.0 32 ............................. TTTTTCGGGACGACAAGGGAAGGTTCTATACG 470105 29 100.0 32 ............................. TATTTATAAGGGAGAATAAAGAACATGAAAAC 470044 29 100.0 32 ............................. CCATAGCGCATCAAGAACGCAGCGGCGAACTT 469983 29 100.0 33 ............................. TACGGGAACGAAACTGCCCGTAGGGATCTGGAA 469921 29 100.0 32 ............................. TGATCATTCCGGTTGGCCATGTGGCCGAAACG 469860 29 100.0 32 ............................. GACATCGACGTTGTGATAGTCAGAGGAGTGCA 469799 29 100.0 30 ............................. GACGTCAGTAAGTTGCGAAAATCCATCGGG 469738 29 96.6 32 ..........T.................. TGAGCGACCGCGATCTCATATCGGCCGTCGTC 469677 29 100.0 32 ............................. TCAGAATTTTCGGGCGTTGAAACGGTCGTCGA 469616 29 86.2 32 ...........ATGC.............. TCTTCGTCGCCGCTCACCTCAACCTGAACGGT 469555 27 93.1 32 ...........--................ TCGACTCCGCTCTTCGGCGGTGTGACGATCTT GT [469538] 469494 29 86.2 32 ...........ATGC.............. CGCTCAATCGGGAAAGGCGGGTATGCGTTCAG 469433 29 89.7 32 ...........A.GC.............. CGCAGACGGGACATCGACAACGTCCTCAAGGC 469372 29 86.2 32 ...........ATGC.............. CGAGTCGTGCTTCTGTTCGACGAAAGCCAGAA 469311 29 82.8 32 ...........ATGC......G....... GCGACGTTGACCGAAACGGACAGATTCGAGAC 469250 29 100.0 32 ............................. TATCTCGTCACCGGCAACCTGAACACCAATGT 469189 29 86.2 32 ...........ATG.......C....... AAAGAAGCGCAGATCGCTGTCCTTGCCGGCAT 469128 29 69.0 0 ........A.TATGC.....C.A.G.... | ========== ====== ====== ====== ============================= ================================= ================== 64 29 97.8 32 CTATTCCCCGCGCATGCGGGGATGAACCG # Left flank : CTTGCTGACCTCTATAAAACGGAGCTCACTATACCGATCGCATTCCGTATAGCACAGGGGCCGGCATCGGTAGAATCACGTGTAAGAATGGAATGCCGTGATGTTTTCAAAGAGCGAAAGCTGCTCAAGCGGATCATTCCTGACATCATGGAGGTGTTGTATGGTAATCGTCGTGCTGGAGAGAGCGACGCCGGCTCAGAGGGGCGTGATGTCGCGGTTAACTATTGAGCTGAAAGCTGGCGTTTTCGTCGGCAACTTCGGCCGACGTGTGCGCGAGAAGCTATGGGCGCGCATAACGGAAGAGTGGAAAGTGGACGCTTTGATGATCTATAAAACGAACACAGAGCAAGGCTACGCAGCTCTTTCGAACGGTGACACGAGCCGGGAAATCGTCGATTTTGAGGGGATGGTGCTCACCCAGTATCCCGTTCCAGAAAGCAAGCAAAAACCTGCTTGACTTTAAGCAGTGATCTTTAAAAACACCTATACGGACTTTTAGT # Right flank : TGCAGGCCCTTCATTTGCAACGAAGGGAAAATCACCAGCGAAACGATACACGACACTTACTGCCCGGCGAACAGAGAGAAGAGGCTACCTAACAGCAGCCTCTTCCCCTCACAGCTCTTCTCTGTGCCCTCCGCGTCCTCAGCGGTTAAATGATTTCTAAATGTTTAGCGAAGCCGCACATGAGCGTGTTTTTGCCTGTGTAGCAAGGGGAAGCGGGCTTGCTGCCCCCGATTCCTGCTTGCACGCAGAATCGGCTTTTCGAGACTGACCATGCTTGCTCCCATAGCTCAGTCGGTAGAGCACCTCATTCGTAATGAGGGGGTCGGCAGTTCGAGTCTGCCTGGGAGCTGGTATTCACTTCTTAATTCACAATCACCCGTTTTCTACAGTCTGGCGTAGGTTTTACGGCCGCGCTTGATAGCTATCTCGAAGCCCATGGAATGAATAAGCCGCGCGAAGCTTGAGAAAGTGGGGTTGTCGCGCTTTCCGCTGCGCAGATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3322222-3324265 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH597773.1 Leptonema illini DSM 21528 Lepilscaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3322222 37 100.0 34 ..................................... TCAGGCTACCTCCGAGGAGTCGGTAAAGCGGAAA 3322293 37 100.0 33 ..................................... TCTATAACGACGCCACGTAGTCGGCGAGCTGCT 3322363 37 100.0 34 ..................................... AAGCTCCGCTTTTGCCATCGCACTTGCAACTGCG 3322434 37 100.0 36 ..................................... ATATCAAGTAGACGCTATTTGCCCGATCTGTCAACC 3322507 37 100.0 34 ..................................... TTCAGACGGCGTGCATCTCACTGCAACCGGTTTC 3322578 37 100.0 34 ..................................... TTCTCGGACTCCGATGATCTTAAGCCCATATTCG 3322649 37 100.0 34 ..................................... TCTCCGGCGAGCGAGGATGCGTCTCGCTACAGGG 3322720 37 100.0 35 ..................................... CTAACGATCAGGAAGAGTATGCGGAAACCGTGCGC 3322792 37 100.0 37 ..................................... ATACTGTCTATTGTATGGCCTTGGTTTACTACTACGG 3322866 37 100.0 35 ..................................... CAAACTTCCTGTTCGCTAAGACCGGCGAATTCAGG 3322938 37 100.0 33 ..................................... ATAAACCTCGATGTAAGTCCCGATACCACCGAC 3323008 37 100.0 34 ..................................... ATCCCTTCTCGAACCATTACGACCTACGTATTGT 3323079 37 100.0 42 ..................................... CGGACGAATCTGTATACACGGAAGAAACTGTCCTCGACCTGA 3323158 37 100.0 35 ..................................... CACCTCGTTAAGATCTGACAGACTCGATCGGCGTC 3323230 37 100.0 36 ..................................... ATTTTTGTGCTCATCTTTTCCCCCGTGAATCAGAGC 3323303 37 100.0 35 ..................................... TTGCCTATAACCTTAGCGCGAATCTGCATCCAGTA 3323375 37 100.0 33 ..................................... GGGGCTAACTCTGTTCTCACGTCGATTGACTAT 3323445 37 100.0 33 ..................................... CAGATAAAAAATACGTATAACCCGGCGCAGCAA 3323515 37 100.0 36 ..................................... AGTGTGTCCCTCGGCTTGATCCGTTCGCTGTACAGA 3323588 37 100.0 35 ..................................... TGGTGTGCGTTATACAGAGTTTTTGAGAGCTGTAT 3323660 37 100.0 33 ..................................... GACGATTAAACTCGTTTAGCGCCATCGACGGTG 3323730 37 100.0 34 ..................................... GCTGCTGCTATGGGCCTTGGTCAGGCCTTTAACT 3323801 37 100.0 33 ..................................... TACTCCAGGAGCTGGTACGAAACCGGGATTTTG 3323871 37 100.0 35 ..................................... GCCAAGATAAGGGTGCTTGCAGTTCATTTTGTTTC 3323943 37 100.0 35 ..................................... ATAGAATTCGGCCACATGTTGCTTAAATGTATTTT 3324015 37 100.0 34 ..................................... AAGGACGCAAGAGCAATCGGCGTCGCGTACGCAG 3324086 37 100.0 35 ..................................... AGCGCCCCGTCCATATCGAGATGAGCCTGTCTCCC 3324158 37 100.0 34 ..................................... ACCGTCATAGGGGTGGGCGAATTGGCTGAGGTCG 3324229 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 29 37 100.0 35 CTTTCATCCTTCCTTCGGGAAGGATGTGGATTGAAAC # Left flank : GACGTTGAGACCGTGACAAAAGAAGGTCGACGACGATTGCGTCGAGTAGCGAAGGTCTGTGAAAGTCACGGCCAGAGAGCTCAGAAATCCGTTTTTGAGTGCCGCATGGAGCTATCTCTCTATCTACAATTTGAAGAGCGCCTGCGTTCCATCATTGACACCGAAAGCGATAGTCTGAGGATCTACCAGATCGATGAGGACTCTGTTCGAAAGATCAAGCAGTTCGGGCAAACCGGCCTGCGAGACTTCGAAGAACCTCAGATCGTATAACGCAGGCCAATTTGCTTCTGCGTTAGTGAACGAAATGCGAACATGGGTCTCCCGGAAAAACCCGGGGGGTTCGCAGCGAAGCAAAACGTGCTTTTTCTCGAGGAAAACCGACAAAATGCAAATGGAAACTCCCCTAAAAACGCATATCCTGTCAGGGTTCGCAATGAGGGGTATAAATATGCCCTCAGAGCTATCCAGAAGCCCCGTAGAGACACGCCAGGCCGCCCGCC # Right flank : CGGATTACAGGGACGTTACGATGAATACCGTTCGACGGTTTCCTTTTCGCGGCTTTCGCGCTTTTCGCGGTCAAATTCTTACTCCAACAGAACCGTGAAAGACGCGAGCCGCCCGCGCACTCCTGCCCGATTAACTGATATTATAGAAACTTCTCATCATCCTTCACCCATTCACGACGGCTTTGCTCGGCGCCCTCGGTGTCCTCTGCGGTTTACAACTCCGCACAGGTCTTCCCTCTCCGGATTGACAGCACAGTCCGGCTCGCCAAACTCACACCGTGTCGCATTCAACACACATCCTGCTTGTGGAGCCCGACGACACGTTACGCTTCACGATGGAAAAGCAGATCGGCTATTTCGGATTTTCCGTTCAGTCGATCACAAGCGTGGATGAGCTGCGATCGGTCGAAGAGGCGCCGGCCGTGCTTGTGATCAGCCTCGGCGAAGAAGAAGGCAATGCGGCGATGGCCGTTTCAGAATTCAAGTTCAGGCTTGGCCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATCCTTCCTTCGGGAAGGATGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.10,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //