Array 1 911635-916223 **** Predicted by CRISPRDetect 2.4 *** >NC_012632.1 Sulfolobus islandicus M.16.27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 911635 25 100.0 40 ......................... AACTATATCTAGGTGTTTCATGGACGGGTCACCTCATTTC 911700 25 100.0 37 ......................... ATATTATTCAAAAAACTGATTACGTGAATGGATTTAT 911762 25 100.0 38 ......................... TTAATTTCTTTGACTGGTAATTTCTGTTCTATTTCTTT 911825 25 100.0 37 ......................... TTACCAACCCGTTTTTATTGACAATATAACGGTTGTA 911887 25 100.0 37 ......................... TGATCAATCACTTGTATTCTTTTGTGTAAATTTCGTC 911949 25 100.0 39 ......................... AAGAATGATAGAATACACTACCAGTAAACGTCACTAAAA 912013 25 100.0 35 ......................... ACATAGAGGGCGTTCCTTGTCACTATTAACCATGT 912073 25 100.0 39 ......................... TAATAATGATATATTGTAGATATTATCGTTGCCCGGGGC 912137 25 100.0 38 ......................... ACTTTTGCGTTTTCATTTGTCTCTTCTTCTTCAAGTAG 912200 25 100.0 39 ......................... TTTGTTGGGTGTTCGTCGTTGTCCCGGCATTGAGGTTTA 912264 25 100.0 40 ......................... TAAATTTCTATGTTTCATTTCAAGCATTTTTCTCTACCCT 912329 25 100.0 38 ......................... TATTTATTATAACACAAAGCACTATACACTTCAAAATT 912392 25 100.0 38 ......................... AATTTGATCTATCGCGGGTATTAATTTGTTCATAACTG 912455 25 100.0 39 ......................... ACAATAAGATAGAAGGGTCTCTCGCGATAACTCTGTAGT 912519 25 100.0 36 ......................... TTAAACTTTTACTAACTTACTAACTTACAAACTTAC 912580 25 100.0 36 ......................... TTCAGTAAGTAAGTTCGATTTTACTTATCGCCCATC 912641 25 100.0 39 ......................... ATAGATATGATGAGATGGCAAACAATGTATACTAGGAAA 912705 25 100.0 39 ......................... CTGACTGGTATCAAAGATAACGCTTTCTTAGGGTTCGTA 912769 25 100.0 43 ......................... GCAGTTAGGAAAACCACCAGATTTGGCTAGTTATATAGCCCAG 912837 25 100.0 37 ......................... ACAATACCATGTGCAGAATCAATAAACAATATGCTGT 912899 25 100.0 38 ......................... ACTTGTATATCAGATATCATGTCTACTAACGGCAAATT 912962 25 100.0 37 ......................... TATCATCATTCTCCTTGATAAACCAGTCTCACTTTCT 913024 25 100.0 40 ......................... AGTTATTTCGACGTGATTTAACGCACAGTAAGATTTATAA 913089 25 100.0 38 ......................... CTTGTATGCGCACTTACGAAAAGCCAATAATACTCAAA 913152 25 100.0 36 ......................... TCAAAATATATATCGATGATTTCTTCAAGATCACTT 913213 25 100.0 38 ......................... ATAATATTCTCTCTACTATTTCTTCTTTCAACTATTCA 913276 25 100.0 37 ......................... CTAAATATTTCGTGTTTATATCAAATGCATATACTTT 913338 25 100.0 39 ......................... TTATATGTAGTGACGGTAAGTAGTAGCATCTATAACTCT 913402 25 100.0 38 ......................... GATTACTCTTCACAGATAAACATTCTTTAGGTAATTCT 913465 25 100.0 39 ......................... TTTCGTTATCGTTCACGGAATTTATCAATGCAGTTAATT 913529 25 100.0 38 ......................... TATAAGAACCTAAAAGAATTAACTAAGAGTGTTGACGG 913592 25 100.0 38 ......................... TTCATTTCCGGCTCACCCTAGCCAAATACTCTTTGAAT 913655 25 100.0 38 ......................... GATATCCATTCCTCAGCACTCTTAAATCCGCTGAAATT 913718 25 100.0 39 ......................... TAGAATCTAGCAGTACTATGACCCATATAACCATATACA 913782 25 100.0 38 ......................... CTTGTTAGTATATCTATTTTCATATTTATACACCCGAA 913845 25 100.0 35 ......................... ATTAATTCTTTTACTGTATAGAAATATCTCATTTT 913905 25 100.0 35 ......................... TCCGTTTCTAACTTATTAAAGTATTCATATAATGC 913965 25 100.0 36 ......................... GTATTAAGTCATCAGAATATCCTTCTAATGATAGAG 914026 25 100.0 45 ......................... GCTATTAACATTATTAAGTTATAGACATTTTGTCCATATTCTACG 914096 25 100.0 36 ......................... ATTGAAAAGACTTTACGAAGTATATACAAGTGCTCA 914157 25 100.0 36 ......................... AAGTACACTTTATTAGCATTTTCTGGCAAACGATTA 914218 25 100.0 38 ......................... TGATTCTCATCTATCTCCTCCTCCAATTCCGCGAGGAC 914281 25 100.0 37 ......................... TTATTAATAATTTTTCGGGTGTTTTCATGTTTGTGCC 914343 25 100.0 38 ......................... AAAACTAATTGTATATTAGCAGGGTCACTTTGCACTCT 914406 25 100.0 42 ......................... GTATGCTATGCAACAGTATTTTAATCTTATTTCTCGGATCCT 914473 25 100.0 39 ......................... CTATATATTCGAGAAACAGGAATTTTCCCTGACTTATTT 914537 25 100.0 37 ......................... TATTAAAATACTTATTAGCAATCATTGCTGCACGTAC 914599 25 100.0 41 ......................... TTTAAATTCCTTTTAACATCACATAATCTTTATTTCATATC 914665 25 100.0 39 ......................... ATTAATACAATTAAGCTCCGTCTTTGCTAGACTCTTTTA 914729 25 100.0 41 ......................... CTAATGAAACATAAGAGCGAAAAGAAGTTTAGTAGAGATTC 914795 25 100.0 39 ......................... GCTTGTTTCTGATTGATGATATACCTTATTATTACTGGT 914859 25 100.0 45 ......................... ACAAGATTCGTAACACTATTGACGAAGGTAAGAACGTTATTCTTG 914929 25 100.0 37 ......................... TTTTACAATCAGATATATTGATAGTTGATTTCTGCTA 914991 25 100.0 38 ......................... TAATTTCATTTTCATTATTTCTCAACTCCCTTAATTAC 915054 25 100.0 39 ......................... CTAACTAAAACACAACTAAATATAACACTATATAACACA 915118 25 100.0 38 ......................... ATACTCTGTTCCTTGCTCCATCTTTAGTAATTTGCTAA 915181 25 100.0 35 ......................... ACCTTACTTTCTCTTCTCCCTTTAGATTAAGTTTT 915241 25 100.0 40 ......................... TATAAATAAGCGGTAAAAATGAAGAAAAAAACGTTTCTAT 915306 25 100.0 41 ......................... AGATATTATCCTTATATTCACCTACTTTTTGCAGATATTTC 915372 25 100.0 39 ......................... TAGAATATCAAGCAGATAAATTAGTAGTACAAGATGTGA 915436 25 100.0 37 ......................... TCTATTAATATTGTATGCAACATTATTTTAACTTTGC 915498 25 100.0 40 ......................... TAGACAGGTCAGTATAGGTCTTACCATCTAATAAAGCAAG 915563 25 100.0 42 ......................... AAATTACTATCTTGAATAGAGATATTAGCGTTGTCTATTGCT 915630 25 100.0 35 ......................... CTATATATGGGAAGGCTTATGATCACCTAGTAGAA 915690 25 100.0 40 ......................... GATGAATATGAAGAATTTGCTACTATAATAGTGAAACTCC 915755 25 100.0 39 ......................... CTCATCACCCCATGTTTCTTCAAATCCACCCAGATTCTC 915819 25 100.0 35 ......................... AAGAATCCCCAAGGATAAACACTAGCATATCGACC 915879 25 100.0 38 ......................... TTCCAAATACACGTTTATTCAATATGATATCCAGCAAC 915942 25 100.0 41 ......................... TTATTATTTACAGTTATTCTTATCTTTGCCATCCTCACCAC 916008 25 100.0 38 ......................... TCAAAATGAGTAATTTTTCTTCATGCAACATAATTCAC 916071 25 100.0 38 ......................... TCTTTCACATACGTTTCTATACGCTTCTTCTTTCCATC 916134 25 100.0 40 ......................... AACATGCTCAAAGCAAGTGATGGGACGATTACTAACCTAC 916199 25 88.0 0 ...C.....C....C.......... | ========== ====== ====== ====== ========================= ============================================= ================== 73 25 99.8 38 GATTAATCCTAAAAGGAATTGAAAG # Left flank : AAAGATAGATTAAAAAATTAACCATAAAAGAGTTCCTTATTTTTTGATCGATATTTATTTTTTATTTGGTTAAAAAGTTTTTACTACTACATTTCTGGATCAGACGTGGAATTAACGTGATTATAAGTCCCTTTAAAAGGATAGTTATGCGTTAGAATGAAAAACAATTATACTAAGAAGCGCAGTTACTAAATTATTGTTTACCATCTCTAACGATTTTATAATAATAGAATGACTAAAATGTTACCTAAAAGTTCGTTCTTATGAAGTGGTTTAAAAGTGTCGGAGTTCGAGTCTCAATGCGACCGAAACGAATCTTTTTCGTATAATTGAACGTTTATAAATAATGGGGTATATTTCAATTGAATGGTAAATCCTTGCGACCAAAAATTGTTAAATTAATTACAACTAGAATCGGTCACATGAGGAGTAAAGGATAATAATGAAGATTTATAAGCAAGAAAGGAGTAAAGTAAGATAAGAAGTATAAAAACACAACA # Right flank : GTAATAAACGATTGTTTGACGACATTATTTACAGGGAGTGTTCTCGTGCAGTCATCTTATTCGAGAACATATAGTAAAATTATATCAGATTTTGTCTAATATTCTGTACTCCCTTCCGGTAAGCCTCATTCAAGGGAGTCATCTCCCTTGAATAGATTACGGGATAAATGACGTTCAACAAGGCAAGACTATAATCAACCATCCTCTCACTCCTGCTCACAGCCCTAGTATCCCTAGCTAACCTAGCCAAGTGGGCCCTACAGTAAGAGTTATAACTCTCCACGGTGTGAGTGTACTTTTTGCTCGCAACATGATTATCAAGAACTTGATAAAAAGAGTAATCATCAGTATAATTAACCTCACTCTTAGGCAGAGATCTCCAGAGGAAGCTGAAAGTCTTGTAATCTCTATTACCCGTAGTAAAGAAGGGTAGACCATCAACCAAAGCATTCCAAATCTACACCTCTTGGGACCATATCTAACTCTAAGGTAAGTCCAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 941866-935642 **** Predicted by CRISPRDetect 2.4 *** >NC_012632.1 Sulfolobus islandicus M.16.27, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 941865 24 100.0 38 ........................ CCTAGCTTCACCGTGCAGGTTCTCAAGTGACGCTACAC 941803 24 100.0 38 ........................ TGTAGAAATTTATCTTCCCCGCTTCGAGATATTTCATG 941741 24 100.0 39 ........................ AACAACCCCGCCATAAGGGTCAAGATAACTATAGTGAAA 941678 24 100.0 39 ........................ TAATAATATATTTATATATCTTTTCTGCATCAACTATCA 941615 24 100.0 42 ........................ ACTTTTACACTGTTGCAAATTTAACCTTTACTGTTGCATTCA 941549 24 100.0 38 ........................ CTTAACGTCTCTTCCGGCAACCTGTCTATCCCGTGGCT 941487 24 100.0 39 ........................ TTCCCTCCCTTTCAGCGATTATCTTTGAGATTGTAAGCT 941424 24 100.0 38 ........................ CTTTCCTTCTTTTACTTGTACCAGTAAACACATGGCGG 941362 24 100.0 40 ........................ ATTTCAATATTCGGCATGGTCTCCATTACGCCTTCTACTA 941298 24 100.0 40 ........................ TCTGATGCAGAGGGCATGGACTTATTAGAAGAAGAGACAA 941234 24 100.0 40 ........................ TTAGATATTTCGCTAAGGCCGGAGTAAATACCTCCCCCTT 941170 24 100.0 39 ........................ TTTGGTAACTCAACTTGTATACTTCTCCTTTCACCTTTA 941107 24 100.0 39 ........................ AGGTATTGAACAGGTGGCTCGTTCTCACCGGAAGGTAGT 941044 24 100.0 40 ........................ TCCTATCTCCTCAAAACCTAGCGATGTTAGCTACAACAGC 940980 24 100.0 36 ........................ CCTGGATCATGATATGTAGGTGCATTTTTAATGAAT 940920 24 100.0 40 ........................ TGATTTTTCCGTTTTCATTAACTAGGGCTTGGTTATCTTT 940856 24 100.0 38 ........................ CACGACATTAGAAGGAGTGGGGCGTATTGGCGTATAAA 940794 24 100.0 40 ........................ CCACCTCGACGACGTTTTTGCCCTTCTCGACCTTCACGAC 940730 24 100.0 38 ........................ CTAAAGGTTGGAAATTCTCAATAGAGATCTGTGAGGGA 940668 24 100.0 42 ........................ TTCTCTATATATTCAACGTGGAGGATTTTGGCGATAAATTTA 940602 24 100.0 39 ........................ TTACAATTATTCGTTCGTGATTTGTCCTTAATTGTAGAT 940539 24 100.0 41 ........................ TGAATTAACCCACGAATTATTACATTACTAGACGCAAATGG 940474 24 100.0 38 ........................ AAATTTTGTAGTGCTTCTTGCAACAGTAAAGCTCTAGT 940412 24 100.0 38 ........................ CCTTTATCTTCGGTAAGCAAGTGTTATTGGGGACACCA 940350 24 100.0 38 ........................ TATTGTAATGTACACATTTCCTAGGTTACTTCTTTCCA 940288 24 100.0 38 ........................ TCCTTTGGAACTCCCTCAATACATCTTTGTGATATAAA 940226 24 100.0 40 ........................ CGTATTCAATATCATTTTTAATAAGAAAATTAAGAAGGGG 940162 24 100.0 41 ........................ TTCCTATTAATTCATCAGTATCTTTATAACCACTGTTTACC 940097 24 100.0 39 ........................ CCTTACTTTTTCTTCCCCTTTGATACTTAATATACTTAA 940034 24 100.0 37 ........................ GTGGGTTTACAATAGTGATGAAGTAAGGTATTTGCGG 939973 24 100.0 39 ........................ TCACAAGTTTCTTATCTTTATTTATAGATGGTATTATAT 939910 24 100.0 40 ........................ TAATAAATTATCTTTATTGTTCCCTCATAATCATATTTAA 939846 24 100.0 39 ........................ ACTGTACTTCTCTATGTTTTTTGTTCCTTATAAATATTT 939783 24 100.0 42 ........................ ATTCTTCTAAAATCATTCGCAAATCCTCCTCCTACATCCCCT 939717 24 100.0 40 ........................ GTAATCATATCAGGAAACGAAGATGTTTACTTTCCTAATA 939653 24 100.0 40 ........................ CTGTAGAACTCGTCCTCGTCGCCCCAAAGCGGAGCGAAGT 939589 24 100.0 38 ........................ CTAGTCTCCAACCACTTAACTGGGGAGTTAAGTGGTTA 939527 24 100.0 39 ........................ AATGAATTCTATTTCTCTCGGCTCTCTTGTGTAGAAAAG 939464 24 100.0 38 ........................ TACTCTGTATTATCCGGATAAAGATAGAATACTTTTCT 939402 24 100.0 41 ........................ TAAATAACGAAAACCTCCTTACCAGACTCCATCTCTTCCTC 939337 24 100.0 39 ........................ TAAATATATTCTTAGCGGTGCTAAAGTAGTGACTACAAT 939274 24 100.0 40 ........................ TCTATATTATTAACTTCTATATCTATGTAAAGTACCTTAT 939210 24 100.0 39 ........................ GTGTTATATTAGGGTATCTACTAGGAACAACATTATATG 939147 24 100.0 38 ........................ AGTAATGTAACGAGATGATTAGGTTTGAACGTGTAAGG 939085 24 100.0 40 ........................ GGATTAAATATAGAAGTGAAACAGAAACGAAGAAAAAAGA 939021 24 100.0 41 ........................ AATACTTCATCAATAAGTAGACCACTGTGGTCAATTGGCGT 938956 24 100.0 39 ........................ CTCGTACTTCTTACATGATGGATAATGAGTTCTGCAGGT 938893 24 100.0 41 ........................ AATCCTTATTCTTTGACCTGCTGAATAATAATTTATTAATT 938828 24 100.0 37 ........................ TATCTTTTAGCTACTGGTACTACTAAATTATTGACAA 938767 24 100.0 37 ........................ ATAAAAAGACCATCTAGTAAAATTCAATAGAAGTTTT 938706 24 100.0 41 ........................ TTAAACTATTATAAGTCTATGGAAGTGACATTTGTCTCTAA 938641 24 100.0 39 ........................ CTATATTTAAACATTTGTCTGGCAGACTTTTAAAGTTTC 938578 24 100.0 38 ........................ ATTTTAGTCAAGAAATCTATTATATCTTGAGTATTAAT 938516 24 100.0 38 ........................ ATCCTCTTCCTGGACTCACGGGACGTCGAGGTCTTGTT 938454 24 100.0 41 ........................ CTCTTCGTTGAAGAACGACGAAACTGTTTCAACCACATATT 938389 24 100.0 39 ........................ TTTACAGTGATGCGTATCGTTTTCAGGATCAAGAAGTGG 938326 24 100.0 42 ........................ AAACCTATAAGCCCTAAACTGAATTCCTCTTCTTTCTTTTGT 938260 24 100.0 41 ........................ TTATCTTTCAACAATACAGTATGCATGTTTCAGGGATGCCG 938195 24 100.0 38 ........................ TTTATCGGGGTCATCCCATGTCCGCAACCCAAAATCAA 938133 24 100.0 39 ........................ GGAAACTATAATGAACTTATGAGAATTGGGAATGTTGAA 938070 24 100.0 40 ........................ ATTACTTGCAAGACTTGGTGGTTTGCCCCATAGTTAGTAT 938006 24 100.0 37 ........................ TCATTATACTTAATTATGGATATTCAAACAGTTGAGG 937945 24 100.0 41 ........................ CACGATAAACATCTTTCTCGACAATCTAGCGTTTGCTCTAT 937880 24 100.0 40 ........................ CATATCCTCTCTTCCCTCACCCAATTGAAGAAGAACCCTA 937816 24 100.0 39 ........................ TAAATAATTATATCTTGTTGTTAATAATAAATTTCATGA 937753 24 100.0 39 ........................ ATTGTAGTCAGAAAGTCTATTATATCTTGAGTAGTAATT 937690 24 100.0 40 ........................ CCATTGGTAAAATGATATCATCACTAGAATGTTTATTATT 937626 24 100.0 38 ........................ GTTTCATCGAGACCACTTAGGAAGAAGTCCTCTAGTTC 937564 24 100.0 39 ........................ ACAACAGAACCAGCTGGAGCACTTGCCGCAATATTAAAG 937501 24 100.0 39 ........................ TCATCTCACCCTAGCGTTATTATATCATTATATAAGGAT 937438 24 100.0 40 ........................ TTGAAAATGATGATGAGCCTCATCTATCACAAATAAAGTA 937374 24 100.0 39 ........................ AAGCCCTGGCAAACGTTTACGCTTGAAGTGGGAGTTTCC 937311 24 100.0 41 ........................ TGCGATTTCGCCGTTTGGCTTTAATAGCTCGGGGTGATTCT 937246 24 100.0 39 ........................ ATAATCGTTCAGGGTGGCAACCCACAGTTCGTGATACAA 937183 24 100.0 38 ........................ TCTACGGTTTGTTCGCTCCAACGCTCGTGCAGAAGGCG 937121 24 100.0 41 ........................ ACCGCTAGCTCCGGAAGGAACTATTATGTTTATCGTTTTGC 937056 24 100.0 39 ........................ ATAGAACCCGAAAAAGTCACATACGGCGGTCAAGAAATT 936993 24 100.0 38 ........................ ATAAGAAACACTTCAAAAAGTGTTATCATTCTTCCTCA 936931 24 100.0 38 ........................ TTAATTAATTATTTAGTCCTTATTATTCAAGTGTCGGG 936869 24 100.0 37 ........................ AAATTATTGAAATAAAAATCAGATTCGATATAAAATT 936808 24 100.0 39 ........................ ATCGCATTCTTTTTTCTTGAAATATGAAAAAAATCCGGC 936745 24 100.0 40 ........................ TATCCCCCTAGAAGAATGTTAATATTAGCTAAATCTGATG 936681 24 100.0 39 ........................ AGAAGAGGAAAAACTTGTAAGTCAAAATTCAATTTATTT 936618 24 100.0 39 ........................ CTTCAAATTGAATGCTTAATCGTTTATCTTTTTTATAAT 936555 24 100.0 39 ........................ ATACTAAGAAGTAACGTAACAGCTTCTGAGAGAACAAAG 936492 24 100.0 41 ........................ CTTGTTCTAACGTCGCATATGCAGAATCTATTAATCCGCGT 936427 24 100.0 41 ........................ AAGATCGTGGACGCGAGCACCGTAGACGAAGAGATAATCCT 936362 24 100.0 42 ........................ CTACGAATTTAACGCCCGCCCTAGATATCAATGATGCCTCGG 936296 24 100.0 38 ........................ TTTGCTATTATCTCTTCTTCTTTTAAGTTGAGTGTAAG 936234 24 100.0 39 ........................ TAACCTTAGATACATCGCTGACGTCAGTAGATATGCAAA 936171 24 100.0 39 ........................ ATGATACCAACATCTTGAAACAACTCAATAATAAACAAG 936108 24 100.0 38 ........................ CTTTTTAACATTAATATAAATAACATAATCGATATCAA 936046 24 100.0 40 ........................ CCCTATTAGTTCATCAGTATCTTTATAACCACTGCTTACT 935982 24 100.0 41 ........................ AGCAATGTAATTTATAGTGTAGTAGTGGAGGTCGTGTTTAC 935917 24 100.0 39 ........................ TCATCCTTCTCGTGGCTATATATAAATCCACCGAAACCG 935854 24 100.0 40 ........................ AACTCCAGTACTGCTTCGCCGTAGGATCCGTCCTCAGACG 935790 24 100.0 39 ........................ TTTCTATTAAGAGAAAGTTACACTTTATCAAAAGACACT 935727 24 95.8 38 ...........G............ GAAGTCTGCCGCTTAGTACTATGAGCTTAGAATCTATA 935665 24 95.8 0 ........T............... | ========== ====== ====== ====== ======================== ========================================== ================== 99 24 99.9 39 GATAATCTACTATAGAATTGAAAG # Left flank : TTTATTGGGGGCATATGATAGTTCCATCCCCGGAGCTCCTCTTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTTCGTAACTGTCTAATTATCTGCGACCTCATAATATAATAGTAGTTGAAAAATCTAAAAACCGTTTTAAGGAGTGGGGTAAAGACATTCCCAAGTTTACTAGGGATTAGCCTAGAATTCTGAGTGCCATCTCTATATAAAGAGCAATAATAAGATTAGGGAAAGAGATTACTCTACTGTTAATGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCAG # Right flank : TATACTATATTCTATGACTTGTTTGAAATCTAAATCTAGGGAAGCCGTATGGAAAAAGACGAAGTCCTAATAGATATAAGTACGTTTATATCGAATAAGAGAAGAAAGGGGAAAGTTAGTGTAGTAACGCTAATAGAAATTATAGAATGGGCTTTAAGGAAGTATAATGAACATAGTAAAAAAGGTGATAAATTGAGGGCTTTAGGTTACCTAAATCTCATAACCTCACTTCCGCTAACTGTTGATGAAGTAATTGAGATAAGAGGTGATGAAATAAGAGATCTAGTGTATTACGTAATTGAGAAAAATTTAGATCCTACTGATGCTTATTTTGTAGTTTTAAGCAAGAGGTTTAAGATGCCTATAATTACAACGGATAAGGATTTCGAAAGGATTAAGGATGAAATAGAAGTTATATACCCATGAAATAACGGTTATGTAAAATCTATGCTTTGTGGGCTATATTTTATGATAGCCAACTAGAAGCATAGAGGTATAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 946465-950691 **** Predicted by CRISPRDetect 2.4 *** >NC_012632.1 Sulfolobus islandicus M.16.27, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 946465 24 100.0 41 ........................ TCATTTTAGACATTGTGTCGAGGAGCATGGACTTGATGTTG 946530 24 100.0 40 ........................ CTAAATATTAAAGTTTTGCATTCTTTGTACGCGTCACCAG 946594 24 100.0 42 ........................ GTAAAAATTACAGAATCTCTTTATAAAATTTTAGAGCAGAAG 946660 24 100.0 41 ........................ ATCAGAGTTGATTATTTGCCAACTGGTGCAGTTCTTATAGG 946725 24 100.0 36 ........................ ATGGTTGAAAGTACGTCATGGAAAGTACTACCGTAT 946785 24 100.0 39 ........................ CTTCTAATTCTTCTTTTAGCCTTGATGCAATCAGTATCA 946848 24 100.0 41 ........................ GTATTGAACGCAGATATTAAAGCAGCATCTTCATATTCCGT 946913 24 100.0 43 ........................ CGGCGGTTACAACAACAAGTACTGCATACGTGATGGTGGGTTA 946980 24 100.0 41 ........................ TTGATTAACACTAGAAATCGCATTTGAAATAATCGTTACGG 947045 24 100.0 37 ........................ GTTCTCTGTTCTGCCATATCGCTATCCAGTAATCACT 947106 24 100.0 39 ........................ ACCTAGTGGTAATGGGGGATTCGCGTTAAACGTCACCTT 947169 24 100.0 38 ........................ ATTTATAACAAACTCCAAGAATGGGAGAGAGTAAACAT 947231 24 100.0 39 ........................ CTTTTCTGTAATCGCTGGGATTCCTCATTATCAGATAAT 947294 24 100.0 38 ........................ TGGCTTGTTAAGCCAGGGAACTTACACACGTAACGTTT 947356 24 100.0 36 ........................ AAATCTTTCGCTAACGGAGAGGTTAGATCTGCGGCT 947416 24 100.0 39 ........................ CCAGTTGTCGCTTCATATGCAACATCTATCCAATACGTT 947479 24 100.0 40 ........................ AATGGCAAAAGGAACTAGTTGAATCTTCTCTTAAGTTAAA 947543 24 100.0 41 ........................ ACTACCATCCAGTCCCTACAATTTACCGGGTACAGGTCTAC 947608 24 100.0 38 ........................ TCTGAAGTTGTGCCCCCCTCACTTTCACTTTCCTCCTC 947670 24 100.0 39 ........................ TGTAACGGTTGAATATATTAATCACGTACACACGTATGT 947733 24 100.0 38 ........................ TGGGAAATACTCATCCGCCATGTTTTCACTAAAACATA 947795 24 100.0 37 ........................ ATTACTAAAAGGTCGTTCTTGGGATCGTATCTATATC 947856 24 100.0 43 ........................ ACAAATAGAATTGCGACCGGGTACAATTTTGACAACAAAACTA 947923 24 100.0 38 ........................ CTTACTTTATGGTCCCTTTCTAATTATGCTGACTTCAG 947985 24 100.0 38 ........................ ATATTATCATCATTGAATATCTCTACTGTATATGTTTG 948047 24 100.0 42 ........................ CTAGCATATGTTAGATTTAGCGATTGAATTACAGTTCCCGCT 948113 24 100.0 39 ........................ GTTAGCAGAAATAATAGCTACATATGACCCTAACAATGT 948176 24 100.0 39 ........................ TTAAGTTATTGGGGACAATACGGGGGATTTTTATTCAAT 948239 24 100.0 42 ........................ GTAAATCCATATGAGTTCTATCAACTACTTCAGCAAACTGGA 948305 24 100.0 43 ........................ TAGAAATAGTATTTCCGTCGGTGGTAGTTAAGTGCTCAAAAAA 948372 24 100.0 39 ........................ ATCTTTGGGAGGGCGAGCGGGTTTATCCCGAAGTTCGGG 948435 24 100.0 38 ........................ AAACCGCATCACAGTGGTTTTGAAGAAGTAAATATTTA 948497 24 100.0 41 ........................ TTTGTGAGTTGGAGACCGTTACGGCCACGCATTCCACGCGT 948562 24 100.0 40 ........................ ATAATACGGTACCTACGTCCATTTGCGACGTCTCATTAAT 948626 24 100.0 43 ........................ AGAACGGGTAAGCATTCCTCTACCTTATGCACCACATCAATCT 948693 24 100.0 39 ........................ TAGGGTTTGGGATAGCTAATGCCAATCTAAGTCATCTAT 948756 24 100.0 38 ........................ GAACAGGTCGAAAGAGCTGAGCTTTGGCATGCAATTTA 948818 24 100.0 37 ........................ TTAGTTTGAACAAGTTGGACATAACGTCCGTAGAACC 948879 24 100.0 40 ........................ TATTGTCCTGCAGTCTCGTAATATACTTTAGTCCCATACA 948943 24 100.0 43 ........................ TCTATATTGAATTCTATGCATATTCAATATTTCTCAACACCTT 949010 24 100.0 40 ........................ TCTACAATTTTGGAGGAATTTGGATTAGATTTAACTTTAT 949074 24 100.0 38 ........................ TAATTTTTTCGTTGTTTTTATCAAAACACAAAGCACTA 949136 24 100.0 42 ........................ GAAGAAGAGTTAGCAATATTAGATCTATATTGCGCAAATATG 949202 24 100.0 38 ........................ AATCTACGGTGCAGCAGGTCTATTTTTTGGAGTATTGA 949264 24 100.0 39 ........................ AGTACAGGGACGTTCAATGAGTAAGGCTCCGCAAGGTAG 949327 24 100.0 44 ........................ TTTGTAACCACCTTTTCGGTTACGCTCTCAAACTTACCACTAAT 949395 24 100.0 41 ........................ AATTCTTTCAATCTTTCTCTTATTGCCTCGTTAACAAATTC 949460 24 100.0 39 ........................ TAGACCCTTCTTATCTACTTAGGAAGTTAGACGGTTACC 949523 24 100.0 38 ........................ AGAAAGAAACTGGGCAGAACTAAGAAACTTTATATCAA 949585 24 100.0 40 ........................ TCATTTGTATACAATCTTATACATATTTCTTCATTATTCT 949649 24 100.0 39 ........................ ACGTACATAAAAATTGCTATAGCATTTGGAGCTGCGGCA 949712 24 100.0 41 ........................ TCCAGGACGGAACAAAGCTAGGGGAATTATTTGCAACGTCC 949777 24 100.0 41 ........................ TTATTTCTCAGAATATCAGAGAAATGGGATCGACAAACGGG 949842 24 100.0 40 ........................ TATAATAATTAAATACTTTGGTGTTAGACTGAAATCTCTT 949906 24 100.0 39 ........................ TACCACCGTTGCATTTGTTATCTCTCGGTAGTATACTTT 949969 24 100.0 41 ........................ TCAAAAATTTGTTCTTGACAGGTCAGAAAAGGACTGGTAAG 950034 24 100.0 42 ........................ TCAACTACTACAACTCCTGCATATGTATTTCCTACAACTCTT 950100 24 100.0 40 ........................ GTGATAATAATCCAGTTGAAGTTGAAGTAGTCATAGATGT 950164 24 100.0 40 ........................ TGTACTCTGGATAGGGGAACCCGACAATGAAGATAGCCTT 950228 24 100.0 37 ........................ GTTCTAATAGCTTCTGTTTCAGAGATGGGTTAGCTAA 950289 24 100.0 39 ........................ AAGCCCTATTTAGGGGGTAAACCCCCTAAAACCCCACGT 950352 24 100.0 40 ........................ CTTGACATTATTCTTATACAATCTAAACAATAACTATGTG 950416 24 100.0 40 ........................ GTTTTATTAGATAAAAATGAAGTTGAAGAAAAAATTATTA 950480 24 100.0 37 ........................ ACTGATACTCTATCCCATATATTGCAAGATCCCTATC 950541 24 100.0 40 ........................ ATCTTCATCTCCAAACTACTGCTATTAACTTATCTCACTC 950605 24 100.0 39 ........................ AAACGAAATATCGAAGGCGTCAGATGAGGAAAGGAAGAA 950668 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== ============================================ ================== 67 24 99.9 40 GATAATCTACTATAGAATTGAAAG # Left flank : TATTTCATAAACTTTTGGAAGAGGGTAGTTTAACCTTGAAGTTTGAGCTCTTAAGCTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAACGATTACAAGATTATCTTCTTTCTGTGCAGAGGTTTCGTTTAGAAGTCTAAGCAGAAAAGTTTCATTAAATCCCATGGTCACAAAATATGATTTCATATCATAAAATTGGTATTACCAACTCATAAATCTTTCTATAACTTAAGAGCTTGTAGCTGAGGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCAG # Right flank : TACTATAATGTAAGTTGGATTTTGTAAGTAGAGTCTTTATTTACAATAGTTACAATAGAGTAAGAGGACTAGTTTTAGCTTAAGATGTTGAAAATGAGCGACTTAATGGAAGCAACTAGATATATTTCGTATTAGCAAATATCATTTTTCTTTCGCATTTATTAATAAAAGTATATAAAAATCTTGGTGAATTTAGTTGACGTAATACGAGATACTCTTTTCCCTTAACAAGAAAAATTTAATACCTCATTTTTCATATTTAGGGTATGATACTAATCTTAACACTTGGATTCGACGAGAAGTTTCAGTACCGCGCATTAATGAGACAAGGCAAGAGTATTGAAAAGGTCATTGTTGTTGGAGGGTTCAAGGAGGAGAAGGCTAAAAAAGCGTTAGAATCGCTCACTAATTTTCTAAAAACAGTTAACGTTCCTTATGAGACTATTGAAGTTGACCCTAGAGACTTTGAAGATATTGTTGAGAAAGTTGGCAAGGTTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //