Array 1 4110640-4112253 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013226.1 Salmonella enterica subsp. enterica serovar Anatum strain GT-38 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4110640 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 4110701 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 4110762 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 4110823 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 4110884 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 4110945 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 4111006 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 4111067 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 4111128 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 4111189 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 4111250 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 4111311 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 4111372 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 4111433 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 4111494 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 4111555 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 4111616 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 4111677 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 4111738 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 4111799 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 4111860 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 4111921 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 4111982 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 4112043 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 4112104 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 4112165 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 4112226 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //