Array 1 34627-35998 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLS01000179.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008088 CFSAN008088_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34627 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 34688 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 34749 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 34810 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 34871 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 34932 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 34993 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 35054 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 35115 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 35176 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 35237 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 35298 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 35359 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 35420 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 35481 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 35542 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 35604 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 35665 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 35726 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 35787 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 35848 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 35909 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 35970 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GACGAGTTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14700-16481 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLS01000098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008088 CFSAN008088_284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 14700 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 14761 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 14822 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 14883 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 14944 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 15006 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 15067 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 15128 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 15189 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 15250 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 15311 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 15372 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 15433 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 15494 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 15555 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 15616 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 15677 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 15738 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 15800 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 15903 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 15964 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 16025 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 16086 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 16147 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 16208 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 16269 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 16330 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 16391 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 16452 29 96.6 0 A............................ | A [16478] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //