Array 1 406838-402787 **** Predicted by CRISPRDetect 2.4 *** >NC_008010.2 Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 406837 29 100.0 32 ............................. AATGCTTTCGGCGTACAGTCCACCATCTCCTT 406776 29 100.0 32 ............................. CCCGGACGGTGAGGCACATCAACCACATCATC 406715 29 100.0 32 ............................. GCCGTGTAGTTCAGCGTGCCGGGGATCAACCC 406654 29 100.0 32 ............................. TGGGGCCGGGCGTGGCGTCACCCTGAACCACC 406593 29 100.0 32 ............................. GGCGTCACGGCAGCTCCGGCGCAGGGCCGGGG 406532 29 100.0 32 ............................. GGTCGCCGCCTCGTCGAGCAGGGCGTCTACCA 406471 29 100.0 32 ............................. AACCTGGACCTCTGAAGAGATTTTGCGTGAGT 406410 29 100.0 33 ............................. CCGGTTTGGTGCGCCTCTGGCCGCCGCGACCAC 406348 29 100.0 32 ............................. CATGGGAATGATCTGCTGGGCGGTGAATCCAA 406287 29 100.0 32 ............................. TACTTTTTAAAGGCCGCCGGGTCGCTGAGGTC 406226 29 100.0 31 ............................. CTCCCCGTTGATGTGGACACCGACACTGAGC 406166 29 100.0 32 ............................. CACCCGACCTCCGCAGAGACGGTGGGCAGGAT 406105 29 100.0 32 ............................. CCCCCGCTCGCCGTGTTCCTCTCGGATGCCCT 406044 29 100.0 32 ............................. CGTGAGCATGCGGTCAGCCGCGTCCACCTCAG 405983 29 100.0 31 ............................. GTTTCCCTCGTGCGCCTTTACGTCAGCGTCC 405923 29 100.0 32 ............................. TTTCATTGGCGACGGACACCAGCGCTGCCTCA 405862 29 100.0 31 ............................. CCCGCAGGACGAACAGCGGCGATTGGGGGTC 405802 29 100.0 31 ............................. GCCAGGGCGTCGGCGTAGTCAGTTGAGCGTG 405742 29 100.0 32 ............................. GGGCGCTGCCTCAGGCCACCGAACCCGACCGC 405681 29 100.0 32 ............................. GCCGCCTGTGTCTCTGTGACGGCGATCATCTG 405620 29 100.0 32 ............................. CGTCGTCAGTCGGCACGAGGTTGAGCTGGAAA 405559 29 100.0 32 ............................. TGATTGAGCCGTTTGAGCCGGTCATGGATGAG 405498 29 100.0 32 ............................. TCATAGCCGGGAAAAGGGGGAGCGACCAACAG 405437 29 100.0 32 ............................. TCCGCAAAAAATGAATGCAAAAATTGCAGCAC 405376 29 100.0 32 ............................. GCCGAGGAGGAGGTTTACGCCATTTACGGCAT 405315 29 100.0 32 ............................. GCCAGATCGAGCATGTGTGCCCGGTGACGGGG 405254 29 100.0 32 ............................. AGCTTTGCCATATACCTCCCCACCGGAACGCC 405193 29 100.0 32 ............................. AAAACCGGAACTCTGCGCGTCACGGCGGACCT 405132 29 100.0 32 ............................. TCGCGCTGGGCGGCGGCGACACCCGTTTCCGT 405071 29 100.0 32 ............................. CAGGCGTCGAGCCTGTTCGGGCTGGGCAGCCC 405010 29 100.0 32 ............................. ATGGCTCATCAACCGTCCTCCGGGGCTGGAAA 404949 29 100.0 32 ............................. CAGGCGTCGAGCCTGTTCGGGCTGGGCAGCCC 404888 29 100.0 32 ............................. TGCCGATTGAGGAGGTGCGCCCTGGAATGATG 404827 29 100.0 32 ............................. GTATTTTCCAGCGTGGTCACGCGATTGCGGAG 404766 29 100.0 32 ............................. TCTGGACATTCGCGTGCACAGCGTGGATGAGG 404705 29 100.0 32 ............................. GCCGTGCAAAAAACCAGCAGCAGCAGCGCGGA 404644 29 100.0 32 ............................. GCGGGCGGCTCGGCCTGAAGATGGCGGCTTAG 404583 29 100.0 32 ............................. TCACGCTGCCGCCCCTCATCACGCCGCAAATC 404522 29 100.0 32 ............................. TCTGGACATTCGCGTGCACAGCGTGGATGAGG 404461 29 100.0 32 ............................. GCCGTGCAAAAAACCAGCAGCAGCAGCGCGGA 404400 29 100.0 32 ............................. GCGGGCGGCTCGGCCTGAAGATGGCGGCTTAG 404339 29 100.0 32 ............................. TCACGCTGCCGCCCCTCATCACGCCGCAAATC 404278 29 100.0 32 ............................. CCGGTGCCGCTCACCTGGTACCCGCCATACGA 404217 29 100.0 32 ............................. GTTTCCCGTACGGCTTCCACCTGGTACCGGGG 404156 29 100.0 32 ............................. TTCCGGGCGGCGGCGCGGCGCGGCGGGGCGCG 404095 29 100.0 32 ............................. TCACCCACGGCGGCAACGGTTGGCACCCACAT 404034 29 100.0 32 ............................. CGACTGGGCCGCGAAAACCACGGTTATGTCGT 403973 29 100.0 32 ............................. TTCCCCCGCCGTCTCCTGGAGGCGGAAACGCC 403912 29 100.0 32 ............................. GATGCGGTGGCTGAGTATTTGAATGCTCATCC 403851 29 100.0 32 ............................. CGCTGGATATCCCCGGAGCGCCGCCCCTTGCC 403790 29 100.0 32 ............................. TGCGGCGAACATCGTGCTTCCTCTGGACACCT 403729 29 100.0 32 ............................. CGACATGGCCGGGTTGTTCTTGTCCGCGCTGA 403668 29 100.0 32 ............................. GCAGAGGCGAGGAAGGGGAGCGTTGCGCGCTG 403607 29 100.0 32 ............................. AACACGCCACCGATCAGCGCCATGAGCGCGAA 403546 29 100.0 32 ............................. CGGCCAACCGCAAAATTGGTAGCCCTCTACCT 403485 29 96.6 32 ............................T ACTTCGGCGGTCAGACCCATAACGGAGAAGAC 403424 29 93.1 32 ..T...........T.............. TAGACCTTGCCGCTGTCACTGTAGGCGCGTCC 403363 29 93.1 32 ..T...........T.............. ACCAGCAGCACCTACATCGCCACCGCCGCCGA 403302 29 93.1 32 ..T...........T.............. GCATACCTCTACGCCACAGGCAGCACCCCGAA 403241 29 93.1 32 ..T...........T.............. CGCAGGGAGGCGTTACCAGCTTCCCGGAGGTC 403180 29 93.1 32 ..T...........T.............. GCGCTCCTGCGGTACGGGCGTTCGGCGAGCGC 403119 29 93.1 32 ..T...........T.............. GTGACTGAACCGCTCTGGACCGTGCCCGCCTC 403058 29 93.1 32 ..T...........T.............. CGGTGCCACAGCCAGCGGCCCTTTTGCCGCTT 402997 29 93.1 32 ..T...........T.............. GTCGCCGAGGTGATGGCCCTGCGCCGGGCATT 402936 29 93.1 31 ..T...........T.............. TCGCCGCCCCCGCCGTAGCGGTGAATGCTGG 402876 29 93.1 32 ..T...........T.............. CCGCGCCCACAACGGGTGTACATCCGCCAGAG 402815 29 93.1 0 ..T...........T.............. | ========== ====== ====== ====== ============================= ================================= ================== 67 29 98.8 32 GTGTTCCCCACGGGCGTGGGGATGGTCCG # Left flank : ATCTCCTGCGCCTGCTGGGCGGGGACGACACCGACCCGAACTCCACCGCCCCCGGCGACCTGTGGGACCCGGAGGGCCACGCGGCGGGAGGGGTGAACCATGCTGGTCATGACTCTTGAAGCCGTGCCTGAAAGCCTGCGTGGGGAGCTTTCGCGCTGGCTGATTGAGGTGCAGCCGGGCGTGTACGTGGGCAACGCCTCGGCCCTGGTGCGCGACCTGCTGTGGGAGAAAGCCGTGAGCCACACCCGCCGTGGCCGCTGCACTCAGGTCTATCGGGCAAACAACGAACAGGGCTTCATCATCCGCACCCATGGGGACCCCACGCGGCGGGTGGTCAGCCTCGACGGGTATCAACTTGTTGCCGTCCGCAACGCTCGCCATGCAGAATTGGCCCAGGAGTACGATCCTCCGGAGGACGATGACAAATTGTGATCTGAATCCGGGCGGGCAGAGGGGACTTCTCCGGGGGTGACGGCCAAAGAAGGCTATGTTTATGAAGT # Right flank : GCCAGCTCGTTTCAGGGGTTACGGAAAGACCTGCTTGCCGTCTGGACTCTGACCTGGAGGAGCGAAGCGAGCACACCGGCGCGGCCTGGGGGGAATATCAACCCCCACGGCTCCTTCAGCCTGACCGGTCCTTGGCGATGTCGGTGAGATCCATCGCCCGCAGTTCTGGCGCGAGGTAGGCCGTCACACCCACCACCAGCAGGGTGACCAGCCCGCCCAGCCACACGCTGCGCGCGGTGCCCAGCCAGCTCGCGGCCAGGCCACTCTCAAAGGCGCCCAGCTCGTTGCTCGCTCCGATAAACATGCTGCTGACCGCGCTGACCCGCCCGCGCATGTGGTCGGGGGCCTTGAGCCGCAGTGTTGCTCGGCGCACCACCATGCTGATGCCGTCGAACACACCTGCTGCAACCAGTACCGCCACACTGAGGAAGAAGTTGCGTGACAGCCCGAACACCACCATACATATCCCAAAGCCCGCCACGGCAAGCAGCAGCGTGCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 218769-217948 **** Predicted by CRISPRDetect 2.4 *** >NC_008025.1 Deinococcus geothermalis DSM 11300, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 218768 37 100.0 35 ..................................... AATCTGCCCGACAACGCCGCGTTCACTGCCGTAAG 218696 37 100.0 35 ..................................... GGCTTGTAGCCCGGCTGTCCCCATTGCTCGGGAAA 218624 37 100.0 33 ..................................... CCTCGCAGCGGATGTCGAAGGCGATTTCGGGAT 218554 37 100.0 32 ..................................... TCCGCTGGGGGACGGCCTGCCGAGGGAGCGGC 218485 37 100.0 35 ..................................... AGACGTCACGGCGTCCAGGTAGTCCTGCCGGACGG 218413 37 100.0 33 ..................................... TGGAAGGAGCGAGCCGAGAAACAGCGCCCCCGC 218343 37 100.0 35 ..................................... CTGCATGGCGTGTGAGCAGCGGGGAATGGTCCTGA 218271 37 100.0 34 ..................................... CAAGCGTGCGGTGCGGTTCGCCGGGGTAGGCGCG 218200 37 100.0 35 ..................................... CTGATTGAGGACGCCGCCGGGAACGCGCTTCAGGT 218128 37 100.0 35 ..................................... ACCCGCGTGCCCGCGCTGGGGGGCTGGCCCGCCCG 218056 37 100.0 35 ..................................... GGCCTGAACGGCCTCCCGGACGAATCTAGGATCGG 217984 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 12 37 100.0 34 GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Left flank : CATTACCCCCCCTACCTGCACCGATGATCGACCTGCTGATCTGCTACGACATCGCCACCCAGACCGAAGCAGGCCGCAAGCGCCTGCGCCGAGTCGCCAAAGTCTGCGTGGCCCACGGCCAACGGGTCCAACACAGCGTCTTCGAAGTCAGCGTCAGCGAGATTCAGCTCCTCACCCTGCGCCAGAAGCTGCTGAATATCCTCGACCCCACCGAAGACAGCATCCGCCTCTACCGCCTGCGTCAGCCGCGCGACAAGTTCGTCGAGGCTTACGGCCTCGACCACTACCGCGACCTCAGCGACCCCTTGATCCTGTAATCTCAGCGCGAACCCCCCGTGACCATGAAAACCCGGGGGGGTTCGCGCAAAGCAAAAAGTCCCTCTGGGACGTGAAATTTGACAACCTACATTTTGGGCCACCGTCAAAAACTGGACAGCGCCAAGGGGGTTCGCGCAAAATGGGTCCGGGGAACCGTCTAGGACGTGTCCGAACGGTGAACC # Right flank : GAGGATTGAAACCTGGTCTGGTTTGGGCCGCATCCAAAAGAGAAAAAAGGAAACCCGCCCTGCTCCAGAGCAGGCCGCTCGCCAACCAAGCCCAACCTTCAGTCTTCCGCTTCGGCGCCCGGCCCCCGTCCCCTGCCCCCTGCTCCGTCAGGGGCACGGGTAAGTTCAGCAGCGGGCACGTTCGTCAGAATCCCCTGCTCGGTCTGCACGTCCACCGTCCCGGCGAGCGGATGGAGCTTGGTGACCTTGCCGCAGGCACCGCTGCCGGTGTGGCAGACGCGGGCGTTTTTGCGCGGCAGGTCGCGCAGCAATTCGAGATACTGGGTGTGCTCAAATTGCAGGCAGCACAGGAGCCGCCCGCAGGGTCCCGAAAGCTTCTCCGGGTTGAGAGGGAGCTGCTGGTCGCGGGCCATGCGGATGCTGACGGGCGCGAACTCCTGAAGATGGCTGCTGGAGCAGTTCTCGCGGCCACAGGCCCCCAAAGCGCCGATCATCTGCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : NA // Array 2 884437-883970 **** Predicted by CRISPRDetect 2.4 *** >NC_008025.1 Deinococcus geothermalis DSM 11300, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 884436 37 100.0 34 ..................................... CGCACGCGAGATGGAGATCGTTGAGATCGCCTGA 884365 37 100.0 34 ..................................... CAAGTACGCCGTGTACTCCTCCATGATTCCTTCG 884294 37 100.0 36 ..................................... GCCGCGCCGCAGGCCCGCTCGATCTGGGCCGCGTGG 884221 37 100.0 35 ..................................... ATGGAGTCGAGCGATACTCCCTTCTTCGTTAATGC 884149 37 100.0 34 ..................................... TAACGGGTGTTACTCCTCCGCGCCTTCTTCCTTC 884078 37 100.0 35 ..................................... GCGTAGGGAACAGGCGGGACGCGAATCCTAACCGC 884006 37 78.4 0 ..........................T.CT..TGCTT | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 96.9 35 GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Left flank : CTTCGAGATAGGCCGCTACCCCTGCCTCTGTCAGGTCGGCGGGCTGCGCCTCCAGCACCATATTCAGCACGCGGTACTGATGGCCGTACTCGCGGTGTTCCTCCATCAGCACCTCCGCGCTGAAGCTGTCTCCGACTTCAAGCGGCGGCATCACGCCTATAACGGTCGCGTCAGGGTCCTCGCCTTCAGCATTCCGCAGCCGGGCACTCATGACCGTAAAGCCGCTCTCCGCACGGAAGCGGACCTTATTCACACCTCCGGTCACGCGGAAAGGTTCGGTCGGGAGGCCAGCGCTCATGCCCGCCAGGATAGCGCCCTTTCTCGCGCGAACCCCCCGTGACGGAAAAACCCCGGGGGGTTCGCGCAAAGCAAAAAGTCCCTCTGGGACGTGAAATTTGACAACCTACATTTTGGGTCACCGTCAAAAACTGGACAACGTCGGGGGGGTTCGCGCAAAATGGGTCCGGGGAACCGTCCAGGACGTGTCCGAACGGTGAACC # Right flank : CTTCTCGGGATGGTTTTCGCCTCGCCCACACCTGGTCACATGCTATTTTTTCCGTCATGCGCGTACTGCACACCGCCGACTTCCATGCTGGGCGGAATCTGAGGGGCTTTGACCGCACGCCAGAGATCCATGAGGCCCTGGTGGAGATCGCCGGGCTGGCCCGCAGCGAGAAGGCCGATGTGGTGCTGGTTTCTGGTGACCTCTTCGACACGGTAAACCCATCGGCAGAGGCCGAGGCCGCTGTGTTCGACTTCTTCCTGAGATTGCGGGACGCGAATATCCCGGCGGTGGCGATCGCCGGGAACCACGACTCGGCGGCGAGGTTACACAGCCTGGCCGGACTGCTGGGGTGGGTAGGCGTGCAACTCGTGGCGCAACCCACGGCGAATCCGCTCGACATGATCCGCACGGTGGAGACACGGCAGGGCGAACGGCTGACCGTGGGGGCCCTACCCTTTCTCTCCGAGCGGCGACTCGTAAAGGCGGCTGACCTGATGGGC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 3 1024772-1025013 **** Predicted by CRISPRDetect 2.4 *** >NC_008025.1 Deinococcus geothermalis DSM 11300, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================= ================== 1024772 27 100.0 45 ........................... GTCGGTCTCGGTTTCCTCACGCGAAGCCGCACCGGGTTTCAATCC 1024844 27 100.0 45 ........................... GTCGGTCTCGGTTTCCTCACGCGAAGCCGCACCGGGTTTCAATCC 1024916 27 100.0 44 ........................... TGCTGAGACCGAGTGGGTAGTTGAGGAGGAGGGCGTTTCAATCC 1024987 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================================= ================== 4 27 100.0 45 TCAGCCGCCCCGAAAGACGGCTGCAAC # Left flank : GCACGGCCAGCGCTGCACAGGCGGCGCCGCGCAGGGCGCTCTGCAGCGCTGGCGGTAAGCCTCCCGTCTGTTCGAGCGTCACCACACTTACGGCGAGCATGGCCAGCAGCCCCGGGGCCAAGACCCCCCCCACGCTGGCGAGCGCTCCTCCGGGCCCGGCGAGGCGGGCACCGACCATCGCCGCCAGATTGACGGCGTTTGGCCCGGGCGTGAGTTGCGCGAGTGTAAAGGTCTCAGCGAAGGCTTCATCGGTCATCCAGCCGCGCGTGACCAGTGCCCGCCGGGTGTGGGCAGGCAGACCGCCGCCAATTCCCGAGAGCGCGACGCCCATAAACATACGGGCGAGCGCCAGCGGGCGAGGAGGAAGGGCGGCCCGATCCGTTTCTGGGGGCGTGGCCGGCGCGGTGGAGGTCATGGTTGGAGCCTAAACCCGCTGCCAGCCGCCCTTGCCGTGACTTGCTGGGGAACAGCTGGGCACGCAATGCACGAAATGTCAATCC # Right flank : CGGTTCACCGTTCGGACACGTCCTGGACGGTTCCCCGGACCCATTTTGCGCGAACCCCCCCGACGTTGTCCAGTTTTTGACGGTGGCCCAAAAGGCAGGTTGTCAAATTTCCCGTCCCAGAGGGACTTTTTGCTTTGCGCGAACCCCCCGTGACGGAAAAATCCCGGGGGGTTCGCGCAGGAAAGGCGGCTTTAGGGCAAATCTTGGAAGGTGTGGGATTCGTATTGGCTCCAGCGGATGGTTTGCATCAAGTGCTGGTAGCGCCGTTCGTTGTCATGACCACACAGCTCAAGGACGTGCAGCATGCCCTCGCGTTCCACAAAAAAGGCGCGGTGGACGCTGTGGCCCTTAGGAAATTTCAGAACGCCCCCAGAGAGTGTCTCGGTGCTGCGCTGCCACTCGCGGTCTTGGCCCTGGCGCAACCGCTCCAGCAGCCCCAGGTAGGCGCTGCGGGTGCTGAAGTCCAGGGTGTCGAGGGTCCGCAGGGCCGAGGGCGAGAG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCCCGAAAGACGGCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 1424552-1423870 **** Predicted by CRISPRDetect 2.4 *** >NC_008025.1 Deinococcus geothermalis DSM 11300, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 1424551 38 100.0 32 ...................................... GCGTGCGTTTCCGCGGCGATACGGTGGGCCTC 1424481 38 100.0 32 ...................................... TTGGCCCTCCAACGCCTCAATTACCTTGAGGC 1424411 38 100.0 34 ...................................... CAAACAATCACTGCCGCACCTTGTTCAATGGCGG 1424339 38 97.4 34 .....................................G GCCGCCTAGAGGCCGCGCGCTATTGTGGGCCGCA 1424267 38 100.0 34 ...................................... TATTGCACCAAGTACCAGCGCTTGACACTGTTAC 1424195 38 100.0 33 ...................................... CTTGCACAAGTCGCGATTGTGCGACAGACTTTT 1424124 38 100.0 34 ...................................... CGTTCACCTGCTGGCTAGCCTCCGGGCCTGCCAC 1424052 38 100.0 34 ...................................... AGCGGTGCGCGAATAGGCCGTGCTTGCGCCAGAG 1423980 38 100.0 35 ...................................... ACCTCTTCGATGAGGTACATCCTTTTGAGTCCCTG 1423907 37 92.1 0 .............................G..-....A | A [1423880] ========== ====== ====== ====== ====================================== =================================== ================== 10 38 99.0 34 GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAACC # Left flank : GAAGAGATCAAATTCAACCTGGGCAGCGACCCCGACGTTCGGTACACGCGCACCGTCCAGATCCTGAGCACGGACCGCAACGCACAGGGCAATGTCCTGAGAACCACCTACCGGGTGACCTACACCTTCGAGAACAGCAAGGACCGCCCTGTCCGTGCTGAGGTGACCGAGCAGATCAATGGCCGCCGGATTCTGATTGATGGCGTGGCGAAGGGCCAGAATGCCGCCGCCGAGCTGCGCGTGGACGTGCCCGCCAACGGCAAGGCCACAAAGAGCCTGACGGTCATTATTGACAACAGCGAGCAGTAACGAGCAGTCCATTGCGCGAACCTCCCGTGACCATGAAAACCCGGGGGGGTTCGCGCAAAGCAAAAAGTCCCTCTGGGACGGGAAATTTGACAACCTGCCTTTTGGGCCACCGTCAAAAACTGGACAACGCCGGGGGGGTTCGCGCAAAATGGATCCGGGGAACCGTCCAGGACGTGTCCGAACGGTGAACC # Right flank : ATCCCTTCGAGATACGCCCGCACGTCCGCCTTCACCGGCATGAAGTACATGTGCTGGCCGCGTTCGCGGGCAAAGGCGAGGGCCTGCGCTGCAAAAGTGCGGTTCCACTCGAGCGTTGGCGTGAAGTTGCGGGGAAAGACGGCGTGATTGCGAGCGCGCCAGTAGTTCAGGGTGGCATCGCTGGTGACAGAGGTGGCGCCCCACCAAACCTCTGCGCCTTCCGGGATCAGGTCGGCGTAGGCTTCCATCAGGCGCAGGTCGAAGAAAGGTTGGGTGAAAAATCCGCAAGCGCCCGCATCGAGCTTGCGCTCCAGGTAGTCGCGTTCGCGGGCGAAGCTCTGCCGGTAGGGGTCGAGGCCCGCGTAGATCCGCACGTGAGGAAGTTCGCGGCGGAAGCGCCGGATGGCCCGTACGGCGTCGACGTCGTGGACTTGGGCGCTCATGTCGGCAGGCGCGTCGCCGGTAATGATCAGAACCTCGTCGATGCCGGCGGCATCCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 5 1488142-1489894 **** Predicted by CRISPRDetect 2.4 *** >NC_008025.1 Deinococcus geothermalis DSM 11300, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1488142 37 100.0 36 ..................................... CCGGGTTACTCGTCGTCCTTGTTGGCGTCGTCCCAC 1488215 37 100.0 33 ..................................... TCCAGCGGGGGAAGTACGCGAAGGCCAGCCGGA 1488285 37 100.0 36 ..................................... GGCAGCGCCATCACGGGCCTGACCTCTGCCCTGAGC 1488358 37 100.0 32 ..................................... AAGACGATCTGCGGCGGCGCGGGCGGCTCCAG 1488427 37 100.0 36 ..................................... GAGCGCGGGCGCGGGCTGCATGAAATCGGGACGCTG 1488500 37 100.0 35 ..................................... ACGCGCCTTCAGGGCCTCCGTGCAAAGCGTGATGC 1488572 37 100.0 35 ..................................... TACGCGGCTACCCGCTCCGAAGCTCGCCAGGCCGC 1488644 37 100.0 35 ..................................... CGCTGGGAGGGCGAGCGGAATCAAGGCGGCTACGG 1488716 37 100.0 33 ..................................... GGAAATGTCGGGAACAATCAACCCGCCCCCGGC 1488786 37 100.0 35 ..................................... CTCGCTTTAGCGTGGATTCGCTGAACCCTAGCGCC 1488858 37 100.0 36 ..................................... CTGGCCCGATCTGGTCTCGTCCTGCTCGATGCCCCA 1488931 37 100.0 33 ..................................... GTTGGGGGAGGTGGAGTCCGCCAGCGACCGCGG 1489001 37 100.0 34 ..................................... CTCACCCTCGCTGCCTGGCCTCTTGGCCCTTCCG 1489072 37 100.0 38 ..................................... GCAGAATACGCACACAAGAGCAAGAGGAAAGCCGCGCC 1489147 37 100.0 33 ..................................... CGCCTGGAGATACGCTTCCACCAGGATTTCCAG 1489217 37 100.0 35 ..................................... CCGGATACGCAAACGGGGCAACTGGTAGGCGTGAT 1489289 37 100.0 34 ..................................... CTGCTGGTCTGGGCGCTCCTCGACGGCATCTGGG 1489360 37 100.0 32 ..................................... ACTTAGTCGCCGATGACAACCTGAACAAAATC 1489429 37 100.0 32 ..................................... TCTAAGTGACACATTTTTAAGAGCGGCCCCGC 1489498 37 100.0 35 ..................................... CTCCGGCTCCTGCTTCGCCGGTGCCGGGTGCCGCC 1489570 37 100.0 34 ..................................... CTGCTGGTCTGGGCGCTCCTCGACGGCATCTGGG 1489641 37 100.0 35 ..................................... AAAACACTGGGGTCTTGCGGGGCTTTCCGTCAGGA 1489713 37 100.0 37 ..................................... GTAGCGGCTTCCATCAGAACTTCACCAGCCGTCCGAG 1489787 37 100.0 34 ..................................... GCCTGGTTGTGCCACGAACGCGCCGTAATCCACA 1489858 37 81.1 0 ...................A........CT..ATCT. | ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 99.2 35 GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Left flank : CCCCCCTCGCCCATTGGCCCGCGCACCTTGGTCGCGATGACCATCTCATCTCGGCTCCCGCGCGATTTCAGCCAACGCCCCACGATTTCCTCGGACACCCCGCCGGGATTGCCGGGCACCCAGTTGCTGTAGATATCCGCCGTGTCGATAAAATTTCCGCCCGCCGCACGGTAGGCGTCCATCAGCTCGAAGGCCGTCGCCTCATCCGCTGTCCAGCCAAACTGCATGGAGCCAAGCCCCAGGGGAAAGAGGCGCAGGCCGCTGCGACCGAGTCTGCGGTAGGAGGTCATGGGCGACAGGGTAGCGTCCTCGCCACCCTCGCTGCGCGAACCCCCCGTGACGGAAAAACCCCGGGGGGTTCGCGCAAAGCAAAAAGTCCCTCTGGGACGTGAAATTTGACAACCTGCTTTTTGGGCCATCGTCAAAAACTGGACAGCGCCGGGGGGGTTCGCGCAAAATGGATCCGGGGAACCGTCCAGGACACGTCCGAACGGTGAACC # Right flank : CGGTTCGGGGAGGGGGCAGCTAGCCGAGGGCGGCGTTTAGCTCGTCGCGCAAGCGCCGGGCCGCCTCCCGGCTCGCGGTCACGCTCAGGCCGTCCGCGTACTGCACCGCTCGGCTCGCGCTTGCCAGCGCCCCAGTCCCACCGGGGTGAAAGGCCAGGGCGAGGTCAGCGGCGGCGGCCCCCTGCGCCCCCAGGCCCGGCAACAGCAGCAGCGCCCGCGGCATCAGGGCGCGGAAGAGCGCGAGATCCTGCGGATGGGTTGCGCCGACCACCGCGCCCACGCTCGCGTATTCTCCGTCCTCCTCAGCATCCAGCCGGGCCACCTCCACCGCCACACGCTCGCTGACACCCTGACCTTGGACATCGGCCTGATCGGGGTTGCTGGTCTTGACCAGCACAAAGATGCCCCCGCCGCTTGCGCGCGCTGTCTCCACGAAGGGCGTGAGGGTCTGAAAGCCCAGGAAGGGATTTACCGTCAGGGCGTCCCCGGCGTGCGTGCCG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCGTCTTTCGGGGCGGCTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //