Array 1 24111-22888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZE01000026.1 Neisseria meningitidis strain NM2810, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24110 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 24044 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 23978 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 23912 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23846 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23780 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23714 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23648 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23582 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 23516 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23450 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23384 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23318 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23252 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23186 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23120 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23055 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 22989 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 22923 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //