Array 1 244493-244835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHONE010000001.1 Akkermansia muciniphila strain DFI.5.32 LODAICEJ_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 244493 31 100.0 21 ............................... ATGGTCATTATGTTTGGTTCA Deletion [244545] 244545 31 100.0 34 ............................... CCCCCGGACGATATTTTTAGGGGAACCGGAGACG 244610 31 100.0 34 ............................... ACCCGGCCGGGTGAAAAAGGATTTAAGGTCAGCA 244675 31 100.0 34 ............................... CCGCCGGATGACATTTTCCGGGGGACTGGAGACG 244740 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 244805 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== ================================== ================== 6 31 98.4 32 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : TTGTAAAAGTGAGGAAAATTTTTCCCATTGAGCCTTAAGCTGGAGCCGTCCGTAAGGGCGGCTCCTGTTTTTCATGGCGGAACAAGAGGAAGACAATGCCGGTTTATTGCCGTCAGGGAAGGACATTTCCGCTGTAAGAAATATATTTCCGGATATTCCTGTTTCCCGGGAGGTGGATGCCTGGGTTTGTAAGGTATGAGGAAGATGGTTCTGGATGCGGCAGAAAAGAACGGTCAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGAAACTGAATTTTTTTGAAATGATACAGCCTCGGATGCTGCCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGTATGCTGTAAGTGCTTGGGAAATGTATTTTGACAAAAAATCTCCTTTGATCAGGCCTGTCTGCATCCGTTTTGTTCATCAGGTTGGCGCAAAATCTTTGTTGCATGTTTGATGCTCAAACTGTATTAGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4633-6713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHONE010000019.1 Akkermansia muciniphila strain DFI.5.32 LODAICEJ_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 4633 36 100.0 29 .................................... AAATAATAATATGAGCATTTATGATGACC 4698 36 100.0 29 .................................... ATTTGACAACTTGCTTTCTATTGCTAAAA 4763 36 100.0 30 .................................... TTATAGGAAAACCAAGAATCTACTGTTCTT 4829 36 100.0 30 .................................... ATGACCCCCGGAACACTACTTATAGAGAGG 4895 36 100.0 30 .................................... TCAGTTTGTATTGGTTGGCGACGACGCAAA 4961 36 100.0 30 .................................... TGGAACATTCCACCAGCACGCCGCCCCGCA 5027 36 100.0 30 .................................... CAATGGCGGCTCCTGCCTCTATTGGCTCCA 5093 36 100.0 30 .................................... AAAGGGTTCCTTCCTTCATAAACCCCATCC 5159 36 100.0 30 .................................... TTTACACTTTTAACATACGTAAAGACGGCA 5225 36 100.0 30 .................................... TCGTCTCGCTCGATATGTCTGTTCTCTTGG 5291 36 100.0 30 .................................... TCACATTCCGCCGGCGTCAGATAGTAGCGG 5357 36 100.0 30 .................................... ATACTGTTTTTGGCGTATTGCTGCAAAGCC 5423 36 100.0 31 .................................... GCAAGCTTTTTTGCAAGCGGACGAAGCAAAG 5490 36 100.0 30 .................................... TATTGCCCAGCAGGGCGTGCAGATGGGATA 5556 36 100.0 30 .................................... TTTTAATCTCGCAGTAGGAATAAGGTTTTT 5622 36 100.0 29 .................................... ATGAAATAGTTAAAGACGAAAAGAAAGAG 5687 36 100.0 30 .................................... CAGGCCTGCCTTCACACCGTTGACGGCATC 5753 36 100.0 30 .................................... GAGCTTCACGGTTTCCAGATTCAAATCATC 5819 36 100.0 30 .................................... AATCTGTAGTGGTCTCCGCGAAAAGGACGA 5885 36 100.0 30 .................................... TGATTTTGAAGGACACACCTACTATGCTGC 5951 36 100.0 30 .................................... CCGGGGTGTCGGTTTTCATGGAGAGGCTGA 6017 36 100.0 30 .................................... ATTTCCCGCATTTCCCCAGATTCCCGGCGC 6083 36 100.0 30 .................................... CTTATTAAGTCCAGCCTAACTTATTAAGTC 6149 36 100.0 30 .................................... AACACACCCCTATCTATTCCAACTGTCCGC 6215 36 100.0 30 .................................... CCTGAAACATCTGCAACGTCCGGCGCAGCT 6281 36 100.0 29 .................................... TAGCGAAAACCGCATCCGGCTTTTCTTCT 6346 36 100.0 30 .................................... ACAGGGCGAAAGTATCTCCAGATGTCTTCC 6412 36 100.0 30 .................................... TACCGGAAGAAATACGGTTGTCGTCTTCAC 6478 36 100.0 30 .................................... ATACGCGCATTTAATCAGCACGATGCCCGC 6544 36 100.0 32 .................................... TTGTATTCGTAGGAGGTCGTTCGCGCCAGCGG 6612 36 100.0 30 .................................... CCCGGCGGTGGTGACGGAAGAGAATGCAAT 6678 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 32 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : GCATTTGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATCAGAATAATCACGCCGCCCTACGAAAGTATGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATGAAAGAAGCTAACACCCGTAAAATTATCCTGCCTCATGAAGCATAAACCACAATATAGATTCGCATGGAAGATTATCATGGCCTCTGTTTGCCTCGTTATCACGGCCGTTTTATCTTCATGTGATTCGAAAAACCATACTTCCGAAAAAGCATCCGGGACTTATGCAGAGTTTGTTGTCTTTGTAGATGACCGGGCCGTGATTATTGAGAAGGGTATTCCTGCTAAGGACATTACGACTAAGTGGGAAGGTGCTGGAGTTAAAGAAGTAATCATCTCTAAGTGGGATGATAGGGAAGAACGGCGAACTGTCACTCGTATCATAGGAAAGAACGTAACCACATTGGAGCAATGGAAATGACTAGCGAACTAGAAGAACATCGTAAACTCTTAC # Right flank : TAGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 21431-20336 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHONE010000020.1 Akkermansia muciniphila strain DFI.5.32 LODAICEJ_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 21430 31 100.0 34 ............................... GCCCCGCGATGAAAATCGTGTGGGATATGGGCCG 21365 31 100.0 33 ............................... TTCCCGAAGAGAGCCGGATGCCGGGGTAGTGCG 21301 31 100.0 34 ............................... ATCAGTTCGACGATTGCCACGGCTATATCCAGCA 21236 31 100.0 35 ............................... TCTTGCCCTGCGGAAGTTTGGCGTTAAGGGCATCA 21170 31 100.0 34 ............................... CCGTCGTCGGTGGCGAAAGCGTAATCAAGGATGA 21105 31 100.0 34 ............................... GTTTTCTGAATGTAAAGCAGGATGCCGCCAAGCA 21040 31 100.0 34 ............................... CGCCCGGTTTGATTATGAAAAAGGCGCGGCGTAT 20975 31 100.0 34 ............................... TTTCAGCATGGTCCGGGTGCGGGCTTCCGTCTGC 20910 31 90.3 36 .........CA.G.................. GACATCCAGCTTGTCAAGCAGGGAATCGAACAGGGC GC [20900] 20841 31 90.3 34 .........CA.G.................. CTGGTCCCAGTTGCCGCCAACGTAGGTAACTTGC CG [20830] 20774 31 90.3 34 .........CA.G.................. AGGCCATGATCGACCGCACCCAGTCCCAGGGATT GC [20764] 20707 31 90.3 34 .........CA.G.................. AAGTTCCGTCGTCGTTTCCCCATCCTGGTTGGTG GC [20697] 20640 31 90.3 38 .........CA.G.................. TTCTTCTTCTTCTTCTTCACTGGAAGATTCAATATTCA CG [20629] 20569 31 90.3 33 .........CA.G.................. AGCGCGGTTGACAGCGTGAAAGCGTGCACTGGG GC [20559] 20503 31 90.3 35 .........CA.G.................. GAATTCAAGAGTGCAATTAGTCATCCGGCAACCCG GC [20493] 20435 31 87.1 36 ....T....CA.G.................. CAGCAACGCGTCCATGTTATTTCCCCTCCCGTTTGT GC [20425] 20366 31 67.7 0 CG.A.T.CGCA.G.................A | ========== ====== ====== ====== =============================== ====================================== ================== 17 31 93.3 35 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : AGAAAAAGCTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTGC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACTCCAAGGAGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //