Array 1 99137-97521 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOO01000002.1 Corynebacterium diphtheriae strain ST395-SA-1980-6853 6853_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99136 29 96.6 31 ............................G CCGGAGGACCTGCCGAAAGGGCGTTTTGACC 99076 29 86.2 32 TG...T......................G CCATCGACCGCAGGGCGACGGGAATGATCTTC 99015 29 100.0 32 ............................. GCTGACGAATCGGGGATCTTCGTGGACGGTCG 98954 29 100.0 32 ............................. ATGCGCCCTGCTCACCGCTCGTGCAACTGCTC 98893 29 96.6 32 ............................G CAAGAAAGAGGGGCCGCAACCCCATAAGCCAA 98832 29 100.0 32 ............................. CCCTGCTCAAACACCAAAAATGGAGACAAGCA 98771 29 96.6 32 ............................G CTCCCGCAGCTGCCCAAGGTCGGGCCCTGTAG 98710 29 96.6 32 ............................T TCGACGAGTGGTAGTTCAAATTCATTATTCTT 98649 29 100.0 32 ............................. CAGCGCTCCATCGCAATTGAGCATTCTAATTC 98588 29 100.0 32 ............................. GCCTGCTCGCTGACGTCGTGACCCGCGCAATT 98527 29 100.0 32 ............................. CGCCCACGTCGTACCTGGCCGGCATTCAATCA 98466 29 100.0 32 ............................. GGCTCGCAAATCCCGCGTTGCCTCGTAGGCGA 98405 29 100.0 32 ............................. AGCAGCAGCTGCACCAGCCACAGCAGGTGATG 98344 29 100.0 32 ............................. CGATCGGCCGCCCACGTCGTACCTGGCCGGCA 98283 29 96.6 32 ............................G CGGTGTGGGGCCGTCACACACTATTGGAGTAC 98222 29 96.6 32 ............................G GGCTACGCGTGGAGTGCATAAGATGATTGCCC 98161 29 96.6 32 ............................G ACAAGTCGGCGCGCTGGAAAACGTCGTTGGAG 98100 29 96.6 32 .........A................... CGCCCACCCACGCAACATGGGGAGCGGCCATA 98039 29 100.0 32 ............................. GCCGCAGTAATTACCGCACAAATCGCCGACAC 97978 29 100.0 32 ............................. TGTCCAAGATTAGGCTCCGCGGGGATCATGGA 97917 29 96.6 32 ............................G CACCAGTAGGAAGTATTGTGTGCAAGCGGACA 97856 29 96.6 33 ............................A CCGGGGGCGGATGATTATGAACATTTGGGACTG 97794 29 96.6 32 ............................G CAGCCTTAGACTGCAAAGCCTGCATAGAAGCT 97733 29 100.0 32 ............................. ATCATCACGATTATGCGGCTGAAGCAGCTAAC 97672 29 93.1 32 .......T....................G TTCGGGATAGTGACATCGCCGACAACATGCGC 97611 29 96.6 33 ............................A CCGGGGGCGGATGATTATGAACATTTGGGACTG 97549 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 97.7 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CCGCACCAGCGGGGATGAGCCTAAGAAGAGAGAGGGGGGAGACGCAGTCTAAAACGTTTTCCCCGCACCAGCGGGGATGAGCCCCACGTTGAGCCAGCGTCGCCCATAGTTGAGACGTTTTCCCCGCACCAGCGGGGATGAGCCGAGTTTGTGCCACCAGCGGCGGCGATGGCGGGGGTTTTCCCCGCACCAGCGGGGATGAGCCTAATCCTGAGCAGACATACCATCGCGCTTCACAGTTTTCCCCGCACCAGCGGGGATGAGCCGGCGGTTTCAGTGGTCACGGTGCACTCCTACTCGTTTTCCCCGCACCAGCGGGGATGAGCCCGCTCCTAGGCCATAAGGAATACTCCGGTGCTGGTTTTCCCCGCACCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAGCGGGGATGAGCCGCTGGTACTGGCAGTGACCCTAATACGATTTAT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAGG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 100010-99309 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOO01000002.1 Corynebacterium diphtheriae strain ST395-SA-1980-6853 6853_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100009 29 96.6 32 ............................C ACCACAGGTGGGACACGGCGCAGGCTCACGGA 99948 29 100.0 32 ............................. TCGCCCCCACATCGGCTGTCCATTCACCCGAT 99887 29 100.0 32 ............................. CCCCCACAGGTGGAGGCCTTAATCAGAAAGTA 99826 29 96.6 32 ............................C ATTTTTTACCCCTCATGAAAGGATCAGGTCTG 99765 29 100.0 32 ............................. AGTTCCTATCTGTGTAAATTGAGTTACATAAC 99704 29 100.0 32 ............................. TCGCTATGGGCGGTGACTACTGGGGACATAGA 99643 29 96.6 33 ............................T AAGAAGAGAGAGGGGGGAGACGCAGTCTAAAAC 99581 29 96.6 32 ............................C CACGTTGAGCCAGCGTCGCCCATAGTTGAGAC 99520 29 100.0 32 ............................. AGTTTGTGCCACCAGCGGCGGCGATGGCGGGG 99459 29 96.6 32 ............................T AATCCTGAGCAGACATACCATCGCGCTTCACA 99398 29 100.0 32 ............................. GCGGTTTCAGTGGTCACGGTGCACTCCTACTC 99337 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.3 32 GTTTTCCCCGCACCAGCGGGGATGAGCCG # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGCAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCGTAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : GCTCCTAGGCCATAAGGAATACTCCGGTGCTGGTTTTCCCCGCACCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAGCGGGGATGAGCCGCTGGTACTGGCAGTGACCCTAATACGATTTATGTTTTCCCCGCACCAGCGGGGATGAGCCGCCGGAGGACCTGCCGAAAGGGCGTTTTGACCTGTTTTCCCGCACCAGCGGGGATGAGCCGCCATCGACCGCAGGGCGACGGGAATGATCTTCGTTTTCCCCGCACCAGCGGGGATGAGCCCGCTGACGAATCGGGGATCTTCGTGGACGGTCGGTTTTCCCCGCACCAGCGGGGATGAGCCCATGCGCCCTGCTCACCGCTCGTGCAACTGCTCGTTTTCCCCGCACCAGCGGGGATGAGCCGCAAGAAAGAGGGGCCGCAACCCCATAAGCCAAGTTTTCCCCGCACCAGCGGGGATG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41937-43310 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOO01000024.1 Corynebacterium diphtheriae strain ST395-SA-1980-6853 6853_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41937 29 100.0 32 ............................. ATTTCCCATGCCGGTTCTTCGCCGGCGTCGTA 41998 29 100.0 32 ............................. TCCACCGAGTGCTTTTCATGCTGGTCAAACCA 42059 29 100.0 32 ............................. GTGTGGATGGTTCCGCACGTGTCAAGTCCGCG 42120 29 100.0 32 ............................. TGTCCCGTTGAAGTTGGTGAGTTGCCTGCGGA 42181 29 100.0 32 ............................. TGGCGCAATCTAGGAACCGCAATCGAACGGGC 42242 29 100.0 33 ............................. TTTGTAAGGACGCGTACTCGCTTTCCACGAAAG 42304 29 100.0 33 ............................. TGCACCAGGCTCTCATATCGGAGGCAGAAGCAA 42366 29 100.0 32 ............................. ACCCGTAGGGGGTTTCGGGGGATTTTTTTTAG 42427 29 100.0 32 ............................. TGAAGCAGTCGCAGAATGGGGGGAAGAGCTAC 42488 29 100.0 32 ............................. GCCACACCATGCTGTTCCTTGAGCACTTAGCA 42549 29 100.0 33 ............................. TAGGTTGTCGGTGTCGCGGCGTCGGTTATCGCG 42611 29 100.0 32 ............................. CCCTGCCAGAGATCCAACCATATTCTCCGCTA 42672 29 100.0 32 ............................. CCCTGCCAGAGATCCAACCATATTCTCCGCTA 42733 29 100.0 32 ............................. TTCCAGTTGGCGTTCCGTAGGGTTGGCGCATG 42794 29 100.0 32 ............................. AAAGGGCGCTATCACACCTTCTATGGTGACGC 42855 29 100.0 32 ............................. ATGTCTTCACACGCTATTCGCAGTGGGTGGGG 42916 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 42977 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 43038 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 43099 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 43160 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 43221 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 43282 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CGGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //