Array 1 440154-438082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGN010000002.1 Clostridium perfringens strain GY-32 NODE_2_length_616427_cov_310.090940, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 440153 29 100.0 36 ............................. AATAAAGTCCATCCAAAGCCTTGTGTTGCATCTTTT 440088 29 100.0 36 ............................. GGAACATAAATCTTACTCTTATTTTTTCTCCAAATG 440023 29 100.0 36 ............................. TTAAAGGAAGAATTCAAACAGGAAGCTATGATGCAC 439958 29 100.0 35 ............................. TTAAGAAATCACAACAATATCTTACAAGTCTACTA 439894 29 100.0 36 ............................. TCGTAAATTTCAGGATAATTATTAATTAAAGGTGAA 439829 29 100.0 35 ............................. AAAATTGTTTTGACGAAGAGAGGAAGCAGTTCTGG 439765 29 100.0 35 ............................. AATAAAGTGAATAAAGTATTTAATGGAACTCCTTC 439701 29 100.0 60 ............................. TCCTACAATATTATAATATCACAAATAACATATTTTCAATATCTTTCTTTTTATTAGTTC 439612 29 100.0 36 ............................. ACCAATAACAATGCAACACTATATATTAATGTAAGA 439547 29 100.0 36 ............................. ATAAGAACTAATACAAGTGGTGTAACAGGGGTTACA 439482 29 100.0 36 ............................. TTTTAAATCTTTAAAGTTTCTTTGAATACATTTTTT 439417 29 100.0 37 ............................. GTTGAGAAAGTGCAAGGTATCAATAGAAAAGTTAAAG 439351 29 100.0 37 ............................. CAGTTTATAACTACATCATTTGGGGGAGCAGAAGAAG 439285 29 100.0 37 ............................. TAGTAAAGTTCCTATAAATGTTTTTGATGCATTTGTA 439219 29 100.0 36 ............................. GTTCAATCAAAGAAAGTTTTCATTAACTGGATTGAT 439154 29 100.0 36 ............................. TTTATATCTTTAGCAGCACAAGCACTTAGTACAATC 439089 29 100.0 37 ............................. CGTACATTTAAACTTTATAAAAATACTTCTGAAAAGT 439023 29 100.0 35 ............................. GTTGTTAGAGTATTCCCTCTTTCTTTAATAATTTC 438959 29 100.0 35 ............................. AAGATTTATTTAGAAATGCAGAAATAGATACACTT 438895 29 100.0 36 ............................. AGCTTACAAAGCAATATGAAGGAAAAACTATTAAAT 438830 29 100.0 37 ............................. TTATTGAAAGCATAAGAAATTTTATTAAAAAGTGTCC 438764 29 100.0 35 ............................. TTAGCAAAATGGGCGTTGATACTATGGCTAAGCAA 438700 29 100.0 37 ............................. TTCATTTTTAATTTGATGCTCTATAGCAGTTGTTGTA 438634 29 100.0 36 ............................. GCTAAGAGATTAGGTGATGAATCAGGTGCTTTTTAT 438569 29 96.6 37 ............T................ ATGAGTAAACGGAGCATCTTCAAATTTAAACCCATAG 438503 29 100.0 36 ............................. CTTGAAATTGAAGTAACTTTAACTTTCTTATTTAAT 438438 29 100.0 37 ............................. GTAATAAAAACTTCCTTATTTTCAAAATTAATGAAAA 438372 29 96.6 37 .C........................... TACTCATTAAGGTAAGCCATTATAGCTATCTTATTTG 438306 29 96.6 36 ...................A......... GTAGAAGTACCAAATTTAATAAGTATAGAAATATCT 438241 29 96.6 36 ................A............ ATTTTTTGCTCTAACCCTTGCCTTCCCATTTGAGCG 438176 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 438110 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ============================================================ ================== 32 29 98.7 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAGAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGTAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGCTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACAGCTAATAGCTCCCTTGAAATTTCCTCAAATATTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTAGGGCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //