Array 1 451521-453623 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPJ01000090.1 Salmonella enterica strain NGUA-37_S1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 451521 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 451582 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 451643 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 451704 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 451766 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451827 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 451888 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 451949 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 452010 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 452071 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 452132 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 452193 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 452254 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 452315 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 452376 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 452437 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 452498 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 452559 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 452620 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 452681 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 452742 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 452803 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 452864 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 452925 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 452986 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 453047 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 453108 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 453169 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 453230 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 453291 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 453352 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 453413 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 453474 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 453535 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 453596 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471256-473176 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPJ01000090.1 Salmonella enterica strain NGUA-37_S1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 471256 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 471317 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 471378 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 471439 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 471500 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 471561 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 471622 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 471683 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 471744 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 471805 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 471866 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 471927 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 471988 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 472049 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 472110 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 472171 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 472232 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 472293 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 472354 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 472415 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 472476 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 472537 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 472598 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 472659 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 472720 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 472781 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 472842 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 472903 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 472964 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 473025 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 473086 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 473147 29 100.0 0 ............................. | A [473174] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //