Array 1 1762705-1763869 **** Predicted by CRISPRDetect 2.4 *** >NC_009633.1 Alkaliphilus metalliredigens QYMF, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1762705 32 100.0 36 ................................ CGTTATTATCTTTTAGTCCTGCGAATTGCATTGGTA 1762773 32 100.0 36 ................................ ATTTTGCATTGATATTTCAACCCTGTTATTTTTCCA 1762841 32 100.0 35 ................................ CCCATACAACTACATTGAAAAAATCCGCTTTTTTA 1762908 32 100.0 33 ................................ GCTCATAGCTCTTAGCTTTGAATAAGATTTACA 1762973 32 100.0 35 ................................ TAAAAGGGAGATGATTGAATGAAGTATATAGACCC 1763040 32 100.0 34 ................................ TTCTGGTATTTCCTTACCTTTTAATATCGCTGTA 1763106 32 100.0 35 ................................ TTATAGCTTCAGGTGTTTCTCCGGTGTTGTACATG 1763173 32 100.0 35 ................................ AATGCTCCAGTTTTTAGCTTTCATTTCTCTTATAA 1763240 32 100.0 35 ................................ TTCCATGTGGATTGACCTTTATCGTATTCATCCAG 1763307 32 100.0 34 ................................ TTGTGTCATGTCCTCAACCCATTGTGTCCCTGTC 1763373 32 100.0 35 ................................ CAATACACCAAATTCATTTAGTCTGTATTGCGTGG 1763440 32 100.0 34 ................................ TGCCCTGGTGGCTGGTGTTAACTCTTTAAATTTA 1763506 32 100.0 35 ................................ CTTGATAGTGTGTACAAAACACTCATATTCATTGT 1763573 32 100.0 34 ................................ TTGTTCACTTAGTCCGTTCCATTGTTTTTTAGTT 1763639 32 100.0 35 ................................ TTATCTTTTATTAACATGTTATAATCTGATAGAGA 1763706 32 100.0 34 ................................ CTCCCCTCAATCTCCTACCATTTATTTCTGAATT 1763772 32 100.0 33 ................................ GGATTCGGCAACAACAATCGAAGTAACAATGGG 1763837 32 100.0 0 ................................ | G [1763851] ========== ====== ====== ====== ================================ ==================================== ================== 18 32 100.0 35 GTCGCTCCCTATATGGGGGCGTGGATTGAAAT # Left flank : TTGGACGGATATCCGACGTTTATGTGGAAGTAGGGGATGAAATGTTAGTGTTGATAACTTATGATATAAATACACAAACACCACTTGGTAGGAAACGACTACGCCAGGTTGCAAAACAATGTGTTAACTATGGTCAACGTGTTCAAAATTCAGTGTTTGAGTGTGTGTTAGATGCAGCTAAATGCCGTGAGGTTCAGCACACACTTGAAAAAATTATCGATAAGGACAAAGATAGCTTGCGATTTTATTATTTAGGAAACAATTATAAAGGTAAGGTTGTACATATAGGCGCAAAGGAGTCATTTGATGTTGAGGACACACTTATAATTTAGTGCGAACCTTTAGTTAACATGAAACGCCTAGAGCACTCGCACCTAAAATAGAAGGATTTTTGGTGCATAATAGTTAAAATATGCAATGAAAATCATTGTTTTAATAGTAAGAATGCAAAAGATGGCTAAAAAGTCAGGAAATTAGGTAGATTTTAGCTCTTTTTTGCT # Right flank : TACCAGGAAAAGTAATGTATTCAAATCATTTAGACTTCTCATTCCCAAATGTTCTCACAAACGATGAACCTCAACAAAACTTAGGCATAAAGGAAACCCTTTGATGAGCTTATCTTACCAAAGGGTTTCCTTTATGCTTTAATTTCTTTCAACATATTATGTGCAAAGACTTCGGCCTTTTCTTCGATCTGAGGATTCCAAAATATAGAGCCTGGATCATTAGCAATGGCTGTTAATGCAAAGTAAGGAGGTAATTGAAATCCTTTATTAATATTTAATGAATCAAAAAGTTGCTTTGAAACTGAATCACCACCGGAGTTAGCAGAAACAACTAGGGCAAAGATGCTCTTATCATAGAATTTGATTTTTCGATAGAGAGCTGTTAATCGGTTGATGACAGCAATTAAATTAGCAGAAACAGAATTATTGTAGTTAGGACAAATCCAGACGATGGCATCGGCTGCCTCAATGGCAGGATAAATCTCCGTGACCATCATCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 2274931-2278995 **** Predicted by CRISPRDetect 2.4 *** >NC_009633.1 Alkaliphilus metalliredigens QYMF, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2274931 30 100.0 36 .............................. GGTGTTACTGGACATAATAAATATTGCACCAGACTG 2274997 30 100.0 35 .............................. AATAATTGTGATGTGACTTAAATTATCCTTTGCTG 2275062 30 100.0 36 .............................. TTTGGAGTAATTTGCAATCTGCTATATAATCCCTCC 2275128 30 100.0 37 .............................. TTGCATTGGCAAGCAATTCTAAAGCTTCGGTATTATC 2275195 30 100.0 37 .............................. TTTTAAAACCATTAGAAAAGTCTTGTGGTGATGCAGT 2275262 30 100.0 37 .............................. TATTTTGCATACATTGCTATAACCCTCAAATCATCTT 2275329 30 100.0 36 .............................. GTGTTAGAACATTGTAGTAAAAACAGTATCGCCAAC 2275395 30 100.0 37 .............................. AAAGTATTCCGCTATACTGGTTTTGTTCTTCTCAAAA 2275462 30 100.0 37 .............................. AGATTTAACAGTGTTGATACTAACATCATATTTTACA 2275529 30 100.0 36 .............................. ATGACTAGGAAAGTAATCACTACGATTGGCATTATT 2275595 30 100.0 35 .............................. ATGATTAATAGGTCCATCTTCATTTTTATAAAACA 2275660 30 100.0 37 .............................. AGAGAATATAAGATAGACTTATTCAACGCATTAGATT 2275727 30 100.0 36 .............................. CCATTTAGTGGGAATAATATGTTGGGCGGTGAAGAA 2275793 30 100.0 36 .............................. AATTGCCCTTGCAAGTCAAAGGTGGAATTTTTTCCC 2275859 30 100.0 36 .............................. TGAGGACAGGTGCATTGAAATTCAAAGGGTTAATGG 2275925 30 100.0 35 .............................. CAGCAACCACCAATTCAAATCTATATTCAAATAGT 2275990 30 100.0 36 .............................. CGCTTTAAGCAACTAACTAAGGATGTAGAACAAAAT 2276056 30 100.0 37 .............................. ATAGATAGTGAATTGCAAACTATTGAATTGATATTTA 2276123 30 100.0 36 .............................. AGATATGCCTGTCATTTCAGATAGTTTGGTCATACT 2276189 30 100.0 35 .............................. AAAGCTAAAGGATCACGTTCATATATATCTTGAGA 2276254 30 100.0 34 .............................. CGAAATAGGCAGAATGATGGAAATGTTGTTAGAT 2276318 30 100.0 35 .............................. ATTACTAGCAAAGTAAATAAGACTAAATTACCTAC 2276383 30 100.0 36 .............................. TTGGAAGGACTTGGTTCATAATGATAATGGCATTTA 2276449 30 100.0 35 .............................. TCTAATGCATTATGCAAACCCTGAATCCAACCAAA 2276514 30 100.0 37 .............................. TCCTAAGCATGGTCGAAAATTATCCCGTACTTGTACT 2276581 30 100.0 35 .............................. TTTAATACTCATGTAATTTACGTTACTTTAGATAA 2276646 30 100.0 37 .............................. GTTTGAGGATCTTGCCAGTTTGTTTTTGCCATTTAAA 2276713 30 100.0 35 .............................. AAACAATAAGGAGTGGTTTAAATTATATTATTATT 2276778 30 100.0 36 .............................. AAAGAAAACCACGGAGTTAGGTAGGACTCCGTTTGC 2276844 30 100.0 37 .............................. TTCTAATAAAAAACTGGATCATGAGATCGTGAAGATC 2276911 30 100.0 37 .............................. AAGGTTGCGAAACTAATTGCAGCTTACTTGAAATTAG 2276978 30 100.0 36 .............................. AGGTCAAAGGGGCACTAGGGCAAATGTAGATCAAGG 2277044 30 100.0 37 .............................. AGGGTATGCCTAAAAAGGGCTATATGCGCGAGTCAGT 2277111 30 100.0 37 .............................. GGATTTGAGGATGAAGAGTTTGCACTGGGAGACACCA 2277178 30 100.0 37 .............................. ACTATACCCGATTCCCAGTGCCAGTGTTGAAGCAAAG 2277245 30 100.0 36 .............................. GAGGGAAGAGACTACCACTATCCACCGTAAAAGCAA 2277311 30 100.0 35 .............................. ATTAGAGTGTCCTTAGACAATGCAATCATCCGAGA 2277376 30 100.0 35 .............................. CAACATCTCCTGCTCCATTCCTGATGATCTCAAGG 2277441 30 100.0 37 .............................. GTTGACATAACAAAGGATAGTATGCCGTTTACACCTC 2277508 30 100.0 37 .............................. CCGCTAAAGGTACCTGTGCCAAATGGGATGTTCCCAA 2277575 30 100.0 35 .............................. TTGAAACGAAAGGCTACGAATACCCTTACAGAACC 2277640 30 96.7 35 .........................C.... ATCGCACACCTTGTTTTTAACTACTTTCAATCCAC 2277705 30 100.0 37 .............................. AACTATAATACAGGTCGCATTACTTTTAAATCACTAA 2277772 30 100.0 37 .............................. TGGCTTTAGTGGTGGGTGCGATTGCAGGGGTTATAGC 2277839 30 100.0 36 .............................. ATGTGGGAAGGAACACGCACTAAAGCGCAATATGAA 2277905 30 100.0 35 .............................. AGTAGTCCTTAGCTTTATGATAGAGATATTTAATT 2277970 30 100.0 35 .............................. TTTGTTACGCCCCTTTGGTACTTGTTGTTATTTAA 2278035 30 100.0 37 .............................. ATCAAACTGTAACGTGGCTTAAAAGCATGGGAACAAA 2278102 30 100.0 37 .............................. ATCCTCCTGGGCTTTGCCACTATTTAACACAGCATTC 2278169 30 100.0 36 .............................. TAATTAACCCTCCTTCGTATAATATTTGAAATGCGC 2278235 30 100.0 36 .............................. TTCCTTATAGGTTCCTTTAAAACATACCAAGCATGG 2278301 30 100.0 36 .............................. TTGTTTGAGGAATCCAATTCAATCCATCATCTGTGC 2278367 30 100.0 38 .............................. GAACCAGAGCCACAAATTATATTAGGTACTGTAAAAGG 2278435 30 100.0 37 .............................. GTAGAATTAGGCGGTAAAATGAGAAACATCAGATACA 2278502 30 100.0 37 .............................. TGCGTTAAGTTAAGTGAAACAATGCAAAGAAACCTTG 2278569 30 100.0 36 .............................. CCAGCAGGCAAATCAGAATAAGCCTGACTTATTTCT 2278635 30 100.0 37 .............................. TTATCAAGGACCTCTTGTTTGATTTCTACATATCCCC 2278702 30 100.0 37 .............................. AAAATAAATGAAGAGCTGCCTTACGGGGTTTGTAAAT 2278769 30 100.0 36 .............................. TGAGCAGGCAATAATCGTGTTATCTCAAAACACTTA 2278835 30 100.0 35 .............................. TAAATTTATGCAGACATGGAATGCTGTGGCCGGAT 2278900 30 96.7 36 .............................G TACAAAGATAGAGACAATCAACTCATGTGTCATAAC 2278966 30 93.3 0 ..A..........................G | ========== ====== ====== ====== ============================== ====================================== ================== 62 30 99.8 36 CCTTTAATTGAACTAGAGTAGAATGTAAAT # Left flank : AAACAATATGATGGATTTAAAATTTGGTGGTGAGCATATGTATATCATTTTAATGTATGATATAATGATGGACAAGACTGGAGCCAAGGTACAGAGAAATACTTTTAAAATTTGCAAAAGGTATTTAACCCATATACAAAATTCTGTATTTGAAGGAAACTTGACGGAGTTAAACTTGATGAAATTGAAGAAAGAATTAAGTGAATACATCCGAAAGGAGCAAGATTCATTTATCATATTTAACAGTAGAGATGAGAAGTGGCTAACAAAAGAATTTTTAGGAAAAGAAGATGATAAAACATCTAATTTTTTTTAGAAACTCATCTGTCGACCTATGGTAGTGTAAAAAATAAGGGAGATAGACAATGATTGATAGCAACATGAATAAAAGGTATTTTGTGAAGAATTCATTTTTAGAAATACTTAATTTTTTGTAAAAGCTGTGGTTAGACAGGATATTAGCCAATAAGCCAGTTGTTTGAACGCTTTTAAGTGAACGC # Right flank : GTTGTATATTCGGGCCTTTTTATAATTCCCCTTAGCCGGTATATAATGAACATAAAACTTGAGGTGACGTTTCATTAACAATAGGATTTAAATAAAATGCAGAGCAGAAGAAATTGATATAACAATCTACGGTCTAACAAAGATATTATTCGATATGAATACATTATTGGAGAAATAGAAACTTAATTGGAGGTGTATTGATGAAAATTAAAGAAAAATATTGCTGCCATGTATGAAAACATTTCAGAAAAAAATATAGTAACGACAAATGGTGCCATTGGTGCAAACTTTTTAACCTTGTACTCATTAGTAGAGCCTGGAGACGAAGTTGTATCTGTTTTACCTACATACCAACAAATGTATTCTATACCTGAATCATTTGGGGCAAATGTAAAGATATTGAGATTAAGACCTGAAAATAATTTTTTACCTGATATGGATGAGCTAAGGTCATTGGTAACAAAAAACACAAAAATGATCTGTATCAATAATCCAAATAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTAATTGAACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //