Array 1 57959-60336 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJO01000020.1 Pectobacterium carotovorum subsp. carotovorum strain Y16 Y16.scaffold20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 57959 29 100.0 32 ............................. TAATTTCTTTAACCAAACCGCCGATAGTTACA 58020 29 100.0 32 ............................. CACAGGGAGAGATGGGAAGAGATGCGGGACAG 58081 29 100.0 32 ............................. GTGCGCCAGCCTCTTACGGAATGGGAAGCTGA 58142 29 100.0 32 ............................. CTCATTGCGTAATCCGGCAATGGAAAGCGCTC 58203 29 100.0 32 ............................. TTCACGGTAGAGGGTGTTTGCGCCCTCTGTCA 58264 29 100.0 32 ............................. GCGGCGGAACAATATCGCAAACAGAATCGAAA 58325 29 100.0 32 ............................. CATCATGCTTTGGAAGTCTGGAGCGTCGTGGG 58386 29 100.0 32 ............................. TTGGCAACGCACGGGAAAATGGCGACGATTGC 58447 29 100.0 32 ............................. GTGTACCCACAGTTGTAGTTGTATTGAGAACC 58508 29 100.0 32 ............................. GAATAAATGGCAGATCCGTCACTCAATGTGCC 58569 29 100.0 32 ............................. GATTAAATAACATGAATGCTTTGACCAATGAA 58630 29 100.0 32 ............................. CCTCACTACACCAACAATTTGACATTAATGGC 58691 29 100.0 32 ............................. GGGTCATCGCCGTATCAAAAAGAGACATCTGT 58752 29 96.6 32 ............................C ACGTGCCAAACTGTTCATGAGTCGGCCCGATC 58813 29 100.0 32 ............................. TGACGTTAAAGAGCCGAGGCCGGATGCGTGAG 58874 29 100.0 32 ............................. GTATCTATGGTAACCCTCGCGCACGTCTATGC 58935 29 100.0 32 ............................. CTCAGGTCGTCAGCTTTGTTAGCTGTTTACGC 58996 29 100.0 32 ............................. ATTCGAGATGCTTTGTGGTCACGCCGAATTTC 59057 29 100.0 32 ............................. CAGGCGGCGATATGCTTTCCCGCGAGGCTGGA 59118 29 100.0 32 ............................. CCGGTCTGGGTTTCGCGGATTTGGACGCTGAT 59179 29 100.0 32 ............................. CGTGGCGACAAAATCAGCTTTACTGGCGTGAA 59240 29 100.0 32 ............................. GCCGTTTCTGAGTGGAAAACCAAGTTTAACGG 59301 29 100.0 32 ............................. CCAGTTTCGCGGACATTGTCGCTTCGGCTAAA 59362 29 100.0 32 ............................. CAGATTTTCAGCGGACATAAAACAGAAACGCA 59423 29 100.0 32 ............................. AATTTGCGGTGAAATTTTGGGTTTCTGACCTG 59484 29 100.0 32 ............................. ATAATCACACACCATAGAAAACTCGTGCTCTG 59545 29 100.0 32 ............................. CGCCATTAATTCTAAAATCCGATGCTAACGTG 59606 29 100.0 32 ............................. GATGGTTTCTTTAATGGAACCATTAAAGCAGG 59667 29 100.0 33 ............................. ACTCCCAGGCGCGATTGCTTGTTGAGCAATTAC 59729 29 100.0 32 ............................. CTGAATCAGATCGCGCTCGCTGAAAAATAACA 59790 29 100.0 32 ............................. CGCTCAAGACGTGCAGCTCGGCGCTCAGGAAT 59851 29 100.0 32 ............................. GTTATTGACGCTCCGGTTGAGTTTCTCGCAAT 59912 29 100.0 32 ............................. CATGGTCAAAAAGGCCAAGCCAACGCTTGGCA 59973 29 100.0 32 ............................. TATTGGCCTGAGCAATGCAGTGCTACGGGGGG 60034 29 100.0 33 ............................. CAAATCAGTGAAATTATCGGGAAGATATCATCT 60096 29 100.0 60 ............................. AGCCAGAACCGCCGAACGGGATAAACCGACATGCAGATGCTGATGGGGGTGGGGGGTACT 60185 29 100.0 32 ............................. TACGTTTCAGGCTGTGCCATGATCGTCATTCT 60246 29 96.6 32 ...........................T. GGATAGGTGCAATAGGCTAGGCAAGCCAGCAC 60307 29 75.9 0 ..A..........T....CT..G..T..C | G [60329] ========== ====== ====== ====== ============================= ============================================================ ================== 39 29 99.2 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGATAGCGGCCATCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGTGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTATTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : CAGTAATGAGCGGGTAAAAAAAAGACAGGCATAGAGTTTTGTGATCTACTGATTGTGCAAACAATTCAATGAGATCACCTCTATGCCTGCTTATCAAGTATGTCAGAATTTCTTTCGCGATGCTTTAGCTCCGTTTCACAAATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 178358-177006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJO01000001.1 Pectobacterium carotovorum subsp. carotovorum strain Y16 Y16.scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 178357 28 96.4 32 T........................... AACTAACATTCGGGCTTGCTGGCGTGGTTCAC GA,T [178350,178353] 178294 28 100.0 32 ............................ TACATTCAGGCCTTCAACTGGATGGCAGAGCA 178234 28 100.0 32 ............................ TCACGGCGCTTAAAGTAGTCATCGCGCACCTG 178174 28 100.0 32 ............................ GTTATCGCATCATCCGGGTCTGTCGAGTACGT 178114 28 100.0 32 ............................ ATGTCCAATAATGTGGTGCGGGTCGTCTGAGC 178054 28 100.0 32 ............................ TGCTTCAGAACTATTTGGATGACGCAAAAAAC 177994 28 100.0 32 ............................ ATACAGATGACCGTTAAAACCCTGCGCGGTGC 177934 28 100.0 32 ............................ CCCCGCGTTGACATTGAATTCGATGAGGAACT 177874 28 100.0 32 ............................ TATAAAAATTATCTCGAAAATAGAAAGGATGT 177814 28 100.0 32 ............................ GTTACAACACCCTTGACCTGTGGGCGCGTTTT 177754 28 100.0 32 ............................ GCTGATCATGTCCGTGAATCTAACGTTTTGAT 177694 28 100.0 32 ............................ GATAAGGTGCTGCTGCGATTTGCCGGGTCATA 177634 28 100.0 33 ............................ CTACCGTGAGAACTGCGGCAACTCCAGCCGAAC 177573 28 96.4 32 ...........G................ TGGAAACATTGACGATCTCATGTTGCCGATAC 177513 28 96.4 32 ...........G................ GTATCGGCCCAGTCCAGTGCCTTGCCCATTTC 177453 28 96.4 32 ...........G................ TGATAACCCTGAGTGAATTACTCGAGTCAAAC 177393 28 89.3 32 ..G..............TC......... ACACCAGTTTTTAGGTTGAGTTAATCCCTCGA 177333 28 92.9 32 ...........C.C.............. TACACCTGAATTTTAACGATGATAAATTAAAG 177273 28 96.4 32 ...........C................ GCTACGACAAGAAATATAACTCTGCTCACTCA 177213 28 96.4 32 ...........C................ TGGTAAAAGCGATGAATGCATTCAACATCACC 177153 28 92.9 32 .......A...G................ GTATGAAGCGACGTTCAAAGACATGCCTCATT 177093 28 96.4 32 ...........C................ GGCTCTGATATCGAGAATGTTTCGTCCAGCAG 177033 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 23 28 96.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCCGCCTGAAGCCGAAAAGCAGAGGCTTCCATCTGGTGACCGACGAGATACTGGCGCAGGTCACCGCACTGCGCCAGATAAACGTCGGGCTGATGCAGGTGTTCATCAAACACACCTCGGCGGCGCTAACGATTAACGAGAATGCCGATCCCACGGTGCGGCAGGATTTCGAGAGTTTCTTTAATCGCTTAGTGCCGGAGGATGAACCGTACTACCGCCATACGTATGAAGGTAGCGACGACATGCCCGCGCACCTGAAAGGCAGCCTGCTGGGCAACAGCCTGACGATCCCGATCACCAACGGACGCCTGAACATCGGCACCTGGCAGGGCATCTACCTGTGCGAACACCGCAACCACGGCGGCAGTCGCTCGCTGGTTGTCACGCTCAACGGGGAATAACTCCACGAAATGCGTCGCGCCAGCGACGCATCCTGATAAGCATCTAGCTGCCTGCACGGTAGTTAACAAGAGTGTAATCACTATAAACAAACAGGAATA # Right flank : CGACCTCAAGCGTTATTGTCTGGCTATTATCGAGGTAGCGCTGCGCCGAGTGCCCAATACGTTTACCCCTTAAATAACGCATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGGCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAAAAGCAATATTTGGCTGTACCGATCCCATC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1153-2282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJO01000013.1 Pectobacterium carotovorum subsp. carotovorum strain Y16 Y16.scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1153 28 72.4 34 ..-..TG.T.T...TT.A........... TGGCTGCGCAATTCTGTGATGTGTGGCAATGCGA 1215 29 93.1 32 A.C.......................... AACGCGACAAGATTAACGTTGATTTAGCTGCT 1276 29 100.0 32 ............................. TCCATGCCTTTCCACTGGAAGCGCTCAAGGAT 1337 29 100.0 32 ............................. GTTTGAAAACTCGGCATCAATCAGCGAGTCCA 1398 29 100.0 32 ............................. GCTCAACGCATCGAGTCTCAATTGCTAGGGAA 1459 29 100.0 32 ............................. CTATTCCGGTGAGGCGGCTGATACATACAAAC 1520 29 96.6 32 .............T............... CGCAGCATATCTCAGAACAGCCTTTCTCACAT 1581 29 96.6 33 .............T............... AGAAATCTCAAAATCAGGTGGTTATTCTGCCGA 1643 29 93.1 32 .............T..............A TGGAATGAAACACAAATACCAGTCAGCCAAAT 1704 29 93.1 32 ............TT............... CTCAAAGAAACGACAGCCGTTTTTCTCGTAAA 1765 29 96.6 32 .............T............... CAACAGATGCTCTATGCCCTCGGCTTCTGGGA 1826 29 100.0 32 ............................. GCTGAATCTCGCATATTCGCAGATAAGCGAAA 1887 29 100.0 32 ............................. GGGAACAAAGGCGGGGCTGGCGTTACAGTTGC 1948 29 96.6 33 .A........................... ATCGCGGAGTCAAAAGGGCTAGGTAACTTCCGC 2010 29 93.1 32 .A..........T................ TTCGTTTTTGATACCAGTGAGCTTGAAGATAT 2071 29 100.0 32 ............................. CGCGATGTGATTCAACAGTTCGGCATCAGCGA 2132 29 93.1 32 .A........T.................. TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 2193 29 100.0 32 ............................. TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 2254 29 89.7 0 ............T.....A........T. | ========== ====== ====== ====== ============================= ================================== ================== 19 29 95.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTATCTCGCACACTTGTGGTTCGCCGTTGATGAGCTCAAAGATAATGCGGTAATCTCCAACTCGTAGACGATACCGTTTGCCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTAAGCTCGCCCACTTTGTCTTTGATTCGTCTTCGATATCTGGTGTCAATTGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAACCTTAGTCATGAATCCCTCAAACGAAAGTCTTCCCTGATATAAGTTAATTATAAGACAATTTAACGATTTTTCTTATGTTTTGTTTATG # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGGGTCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACCGTAACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGTGGTGCTGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGTCCTGCTGAACTGTATGACACGGTCGAAGGCCTTGTCAGCAGTGGGAGGTTGGGGCGTGAAGAAGGCTCTGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGATT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //