Array 1 2103813-2098627 **** Predicted by CRISPRDetect 2.4 *** >NC_019943.1 Methanoregula formicica SMSP, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2103812 37 100.0 35 ..................................... TCTTTGATTTTAGTTACTTCTCATTAGAGACTATT 2103740 37 100.0 35 ..................................... ATATATGCTGCCAATGGTAATGGAATAGCAGACTT 2103668 37 100.0 36 ..................................... TCTGCTCAGGTGTGCGAAGTGGACTTGTAGGCTCCA 2103595 37 100.0 38 ..................................... CTGATACCTCATCAGGAGATCCGAATATCTGGGTCTGG 2103520 37 100.0 37 ..................................... ATGGGCTGCCAATCTCTGTCCAGGTATATACTCCACC 2103446 37 100.0 35 ..................................... CATCCACCAGGCTTGCCGGTGTTGTCCCGGGCGAA 2103374 37 100.0 34 ..................................... CAATTGGTCATTCGGTGACGATGGATTCTCAACA 2103303 37 100.0 35 ..................................... GAAGAAAGTATTAGTTCGATCTAAAATGTGGTATC 2103231 37 100.0 36 ..................................... TCCAGCGCCCGATCCAGTGTGACGGTGCAGAAGTAC 2103158 37 100.0 38 ..................................... TCAGCCAAGCGTATCCACCAGGGTATCCTTTGTACTGG 2103083 37 100.0 34 ..................................... CTCTCCGCTCGTAATAGATCGTCCCGTGATCAGT 2103012 37 100.0 35 ..................................... TCGATCAGGTATAAGGGTCGTTCAACTACCACCTG 2102940 37 100.0 36 ..................................... TCCATATCTCGGGTTCCGTGGTCACTGGTAGGATAA 2102867 37 100.0 36 ..................................... CTATGATAACGCATGGTTGTAGAACTGACCTGTTGG 2102794 37 100.0 35 ..................................... TATTGGAATGTGAATGCGGTGTCGTGACCAGTCCA 2102722 37 100.0 35 ..................................... AGGGCCATGCCACACAAGCAACAGAAAACCTGATA 2102650 37 100.0 34 ..................................... CACCACCGGGCATACCAATATGACATTGATATGA 2102579 37 100.0 38 ..................................... TGCGGATTAAACTGGTTGTGCCATGCATCCCCTAATAC 2102504 37 100.0 37 ..................................... CCTTGACAAACCGCATGCAAAATTCCGCGCACTTTGC 2102430 37 100.0 34 ..................................... CCTCTCCACGCGTAGAGGATTTTTGAGGAGATGC 2102359 37 100.0 34 ..................................... CAATCATGTGACAGTATCTTAAATTCTTCGACTT 2102288 37 100.0 34 ..................................... CCGTGATTATCTGCCGTACATGAAAGAGTTCCGG 2102217 37 100.0 36 ..................................... TGTTATGTTATGTTATGCAAGTACTCCGGAAGAGAG 2102144 37 100.0 35 ..................................... ATTCATCCCGGGCCGTGATCAGTTTCCCGCAATAC 2102072 37 100.0 35 ..................................... ACACCTATTCCAACTACTACAGGAACACCCGTTCC 2102000 37 100.0 34 ..................................... AAAATGGTAAAGACTGCCTGAAAAGAAATATTCA 2101929 37 100.0 35 ..................................... TTTGAGCCTAATTGTATATTATTAATTAAGAAATA 2101857 37 100.0 34 ..................................... AAACTTACGAGATGTGGAGATCCGAGAACTACTT 2101786 37 100.0 36 ..................................... TCCAGGAATGTGCCTCGTTCCCCCGCGGTAAGTATG 2101713 37 100.0 37 ..................................... TTTTTCTTAACGGGCGCCTTGACCGTTCCGGGCGTTT 2101639 37 100.0 37 ..................................... TGGTGCGATCAACGGAGCCATGATCGCCTCCGGCTGG 2101565 37 100.0 35 ..................................... CGTGGACGAAAGAAGGGCCCGATTGGGACCCCACA 2101493 37 100.0 34 ..................................... ATCAGGAATGATGGATATACCCAACCGATTGTCA 2101422 37 100.0 35 ..................................... CCCCCTCCCCTCCCCTCTTAAGAGAACAGGAACGG 2101350 37 100.0 36 ..................................... TTCGTTTGATTGTATCGGGTGCTAACATGGTTTCAC 2101277 37 100.0 39 ..................................... AATATACCCCAAGACAACATTAGATTGTAGCAAAGCTTG 2101201 37 100.0 36 ..................................... TTCGTTTGATTGTATCGGGTGCTAACATGGTTTCAC 2101128 37 100.0 35 ..................................... TCATAGGAAAAGTGTTCTACACAAGAAAAGAAGCA 2101056 37 100.0 36 ..................................... ATTCATCTTCTTCTTCGCCTTCGATCCTACAATCAT 2100983 37 100.0 34 ..................................... AACTCTATGAAGAGTATCAAGCGGTTATGCCAGA 2100912 37 100.0 34 ..................................... TCCACATTGATGAAACACTCTCTGTGTTCATTCC 2100841 37 100.0 35 ..................................... CTGTTGGTTCCGATGTTGGTTCAACAGACATTAAA 2100769 37 100.0 34 ..................................... CACCATGCGCCCGTGCCATAACCAGCCGGTGTAT 2100698 37 100.0 35 ..................................... TCATTTCCGGTATAGTATAGTCTCCATTGATCCCC 2100626 37 100.0 36 ..................................... TGAAAACCACGGTATCACCCCTCGACAACCCACACG 2100553 37 100.0 35 ..................................... TCCCGACGGTGGGAAAATGTCGCAGAATTTCCGTA 2100481 37 100.0 37 ..................................... CGCCGGATCTGCGGTAGTGGACGATGTGACGCTTTCC 2100407 37 100.0 34 ..................................... TTGATAACACCAGATCGGAATTTGGAACCATTAC 2100336 37 100.0 36 ..................................... AACAACGAATTTCATTTCAACATAGACCTTGCCGCA 2100263 37 100.0 34 ..................................... CAAAAACCACTAAAATACCGCTTACCAGGTGGAC 2100192 37 100.0 37 ..................................... CACCTCACAAAAAGATTGTTGTAAGGTATCATACCCT 2100118 37 100.0 36 ..................................... AAAGATGGCTGAAAAGAAAGAGCGTAAGCCAGACGA 2100045 37 100.0 36 ..................................... TGATAAGGAACATGGTCTGAGATGATTAATATGTAC 2099972 37 100.0 35 ..................................... CGCAGTGCGTCAATTTCTTTTTTTCCATTTCGTCT 2099900 37 100.0 39 ..................................... AAATCGTGCAGATGAATAATACACCCGCAATACTGTAAA 2099824 37 100.0 35 ..................................... CACCCTTGACGAGCAACCCGCCGTCCTTCTCGATG 2099752 37 100.0 34 ..................................... TCACCGGCTACAAATGCATAATACTATATTCTGG 2099681 37 100.0 38 ..................................... TTTTGCTTCGAGTTCTGCAATCTGTTCATTCAATTCTG 2099606 37 100.0 34 ..................................... CCAAACACTACGACTATCAATGATTTCGAGTACC 2099535 37 100.0 34 ..................................... CCTTTTGACCCGGGCGCACCGCTCGGATAAAACA 2099464 37 100.0 35 ..................................... AAACCACTTGGAAAAGAAGCCCAAAATGAGAGTTT 2099392 37 100.0 35 ..................................... CAAGCCGGGCGACAATTACCTATATTACCTATAGG 2099320 37 100.0 36 ..................................... AGCCATCGTGCGAATGACTGAATACAAGATAATTCC 2099247 37 100.0 35 ..................................... CCGTCAACCGTGAGGTGTTTGTTTTCCGCCTCTTG 2099175 37 100.0 35 ..................................... CCCGAAAGACCACTGTTGCGTGCGATGTTATAGGA 2099103 37 100.0 38 ..................................... TCGGACACACCTGCTTGAACCCAGCAAAGTTACCCCTG 2099028 37 100.0 35 ..................................... TCAAGAACCGCCAGCGAGCGTTTGCCCTGCTCGGT 2098956 37 100.0 37 ..................................... ATGTAAGACCGCAATGCAGTCCCTTCTCCCCCGTAAC 2098882 37 100.0 39 ..................................... CCTATCCGGCGGTTAAGATTGAACAGAACGCCGTAAATA 2098806 37 100.0 35 ..................................... ATCGCTAACTGCCAATCAGCCATTGGGTAAATGTC 2098734 37 100.0 34 ..................................... CCCGATTCATGAGGTTGATCCACCCCTGTTTTTT 2098663 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================= ================== 72 37 100.0 36 CTTCGAGCGAAACATCCACGAGAACAAGGATTGAAAC # Left flank : TCCAAAAAGAGATTAACGTGTTCATCGCATCCAAGCAGAATCATATCAAAGGAATTGTCGATGAAGTCCTCTTCCTTGATGATGGAACGGCCGCCCCGTTCGAATACAAATTTGCTGAGTTCAAGGACACGATCTTCCAGACCTACAAGTATCAGCTCGTCCTTCACGCCATGATGATCCGGGAGAATTACCAGTGCGATGTGAAACGGGGATTCATCTGCTTTACACGGAGCAATCACCACATTGAAACTATCGAATTCACCGGGCCGGATTTCGAGCGGGGTCGAGAGATCATCGGGGAGATCCTTGAGATCATCGACAAAGGATTTTATCCGAACAAGGGTAAATACAAAAACAAGTGCATCGACTGTTGTTATGCAACAATCTGCACCTGATTCTTATCTTTAAATAGGAATCGATAATTCCGCAGGAAGAAATTCATGCAGGAATTTTAAGTGATTTGGTCGCGATTCAGCGGAAAATACGCAAAATTTCGCGGC # Right flank : ATGATGTACTGCGCGCCCTGGTAAGTGTAAGTAATCTTCGAGTGGCACATTCATCAGAACAAGGACGATTTTACATAATCTCCGCGAAAAAGATTCTTGCATTCCAAACAATCCCCCAATCCCTATATTCCCGGACAACAGATCTGTTCACATGGCAGTCCACCCCATCGAGGAGCGCTACGGCACAAAGGAGATGCGTGCCGTCTGGAGTGAGAAAAACCGGTTCGCCTGCATCGTGGCGGCCGAGGTCGCGCTGGCAAAAGCCGAGGCCTACCACGGCATGATCCCTGCAGCGGCAGCAGGAGAGATCGAGAGCACGGCAAAGAACGCGTCGCTCGAGCGGGCGAAGGCGATCGAGCTCGAGATCAGCCACGACATGATGGCAATCGTCAAGTCGATCTCGGAAGTAACAGGCGAGTCCGGGCGGTGGGTGCACTACGGCGCAACGAGCAACGATATCCTCGATACCGCGACCGGCCTCCAGCTCGGGCAGTCGCTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCGAGCGAAACATCCACGAGAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 2648492-2643718 **** Predicted by CRISPRDetect 2.4 *** >NC_019943.1 Methanoregula formicica SMSP, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2648491 32 100.0 34 ................................ AAATTTAAGGGTTAAAAACCAGGGAAACGTAAAA 2648425 32 100.0 33 ................................ ACCATGTTGCACACCATTTAACCGATAGATAAA 2648360 32 100.0 33 ................................ TGGAAATTATACAGCAACAAATTTAGAACCTAA 2648295 32 100.0 33 ................................ CTTTGCCCTCCAATCCCTGTATTCAGCGTAATA 2648230 32 100.0 34 ................................ CTTAATGGGATTGCGCGTAAACAGTAAACTTTAC 2648164 32 100.0 35 ................................ CGATGAACATCCAGATCACATCCCGAGCTCATCAA 2648097 32 100.0 32 ................................ TCATGGATGTAAAACGGATACTTGCAATAGTA 2648033 32 100.0 34 ................................ ATACAACCCGGTCCACTCGCACCCTATCAAGGGA 2647967 32 100.0 34 ................................ TATCAAGGTCGGAGCGAGTCGCTCAAGGATCCCC 2647901 32 100.0 34 ................................ CCGTCAGGACATGCGGCCCCGTCTTCAGGAACGC 2647835 32 100.0 33 ................................ ATCCGGAACGGGTGAATACAATTGCCCATCTAA 2647770 32 100.0 34 ................................ AGTTCGATAACCAACGCCTGCTGTGCAGGAGTGA 2647704 32 100.0 37 ................................ ACTCTGTTTCTGCCGCTTCCTCCTCTCCCTCCTTTTC 2647635 32 100.0 34 ................................ AGCATCTCCACGATCAGCAACGCGATCTCGGAGC 2647569 32 100.0 36 ................................ TTTGATTACCGGCGCGATGCAACGCTGGTGGTCCCG 2647501 32 100.0 33 ................................ TTTTGTGGTAGATATACGGTCAACAAAAGAGAC 2647436 32 100.0 36 ................................ CGCTTACCATCCTTGATCCGGTCAACAGACCACCGA 2647368 32 100.0 34 ................................ AATTTTAGACAGATAATGAAGTGGTTTTGTATTA 2647302 32 100.0 38 ................................ CCCCATTGATCCGCAAAGGCATCCGCGATTCCCCGGAA 2647232 32 100.0 32 ................................ ACCGTGAATGGTGCAATAAATGCCGTCACCAT 2647168 32 100.0 35 ................................ CAACGCGGGTCCGGTGGAATCCATCCACCACTTCA 2647101 32 100.0 34 ................................ ATTGCAGCGCAGGCGTTAATCTGCATGATCGCAA 2647035 32 100.0 35 ................................ TTATATTAGAGCAGGAGATGAAAAAGAATGGTAAC 2646968 32 100.0 33 ................................ TGCGTAAGGCTAACAACCTTTGAAACATTGCAG 2646903 32 100.0 35 ................................ TCTTCCACGGCACGATCCAGAGCTTTGAAACACTG 2646836 32 100.0 32 ................................ TATAGAGATTGATTCTAGTACAACATATTTAA 2646772 32 100.0 36 ................................ CTGATTACAAAGATTGTCATGACAACCAGTAAAAAG 2646704 32 100.0 32 ................................ TACAGATAGCGTTGCATCTACTAAACCGTTAA 2646640 32 100.0 34 ................................ AAAGTGTAGCATACAGGGAGATGCAAAGCGCAAT 2646574 32 100.0 33 ................................ TGCATAAGGCTAACAACCTTTGAAACATTGCAG 2646509 32 100.0 34 ................................ TTGATAATGTTATTTGAATCGGGAGTAATGCCAA 2646443 32 100.0 34 ................................ TGCGAGATGCAGACGTGGCCCGGGTGCTGGCAAA 2646377 32 100.0 34 ................................ TGATCGACGAACAAAAGACAGGTGTGCAAAATGG 2646311 32 100.0 33 ................................ AATCTCCCATGAGTACACCAGACAATATGTGGA 2646246 32 100.0 34 ................................ ACACATCCTTTTCCGCATTCCACCGAGGAAAGCG 2646180 32 100.0 34 ................................ AGGGAGGATACAAGAAAAAGATCAGGGACGCATA 2646114 32 100.0 33 ................................ AAGCTCCTGATGTACATGGCGGGCACGTACGGC 2646049 32 100.0 34 ................................ CTGCACTCTTTCAAGGCACCCTTCGCAGCAATCC 2645983 32 100.0 33 ................................ CGAAAGTCTATGAACGGATCTGGGATCTGAAAC 2645918 32 100.0 35 ................................ CGGACGAATGCGGCCCGGACGATGGGGCCGGACCT 2645851 32 100.0 33 ................................ ATCGAGCTCGAACCTCTCCGGGGCGGGTAATGC 2645786 32 100.0 33 ................................ TATTACGTCAATTGGAGGGGGCGGTCCATCTGA 2645721 32 100.0 34 ................................ AGAGTTTGCGACCGGGATGAAAACTGCGATGGGG 2645655 32 100.0 33 ................................ TATCGGCATGACAAGCCATCCCCACCATACGAA 2645590 32 100.0 34 ................................ TCCAGATGTCTAAAAAATATCTCTGTGATCAAAA 2645524 32 100.0 33 ................................ CCGCTGCAGGCTTTGCGGGGGAAAGGTTGATCC 2645459 32 100.0 32 ................................ ATACACGACACCGGACTGCATCCCGTCGAAGG 2645395 32 100.0 33 ................................ TGTAATATGTTTGGGTGATATTATGATTGATGA 2645330 32 100.0 34 ................................ TTTAATTCATTGTGCAGATTTATTATCTATATCT 2645264 32 100.0 35 ................................ TTTACGTTAACCATGTACTTTCATCTCCTGAAAAT 2645197 32 100.0 34 ................................ TCCGCGATCGCGTAACGGTGAAGGTTAAAAAATA 2645131 32 100.0 36 ................................ CATGATTCTTTCGGGTTCGCGATGTACACAAAGGCG 2645063 32 100.0 34 ................................ ACAGAGTACCCATTATGCACATACACATTTTTTC 2644997 32 100.0 35 ................................ ATGCCTCGGGAAGTTGAGATCCACGGAAGCGAAAG 2644930 32 100.0 34 ................................ TATGAGGTTGAACTGGAACTCCCCGACATGCTGA 2644864 32 100.0 33 ................................ ACAGAGCTCCATAAAATCCCCTGCTTGAAAGAA 2644799 32 100.0 34 ................................ TGCATCGATCTTTCGGTATACTCTGCCATTTGCA 2644733 32 100.0 34 ................................ TTCCAGAATACGATAAACTGCGGTCAAACCAGGA 2644667 32 100.0 33 ................................ TTTCCAACGGGATGGTCATTGACGAGCGGGGCA 2644602 32 100.0 33 ................................ TGGTCCATCAATAAAAGGTGGTTCACGAATAGC 2644537 32 100.0 33 ................................ ATTCCATCGCCATTGAAACAAAGGGCGATGCAA 2644472 32 100.0 34 ................................ ACGGGTTACCTGTTGGTCCGGTCGTGGCTCGACA 2644406 32 100.0 35 ................................ TGAACAAACCTGCCGGTACGGGAACGACTCCTGAA 2644339 32 100.0 32 ................................ ATCAAAAGCCCATATTCTAGGGTCATCTCCTA 2644275 32 100.0 34 ................................ GGATAGTACCGGGGGCACTGTGCTGTATTCCGGA 2644209 32 100.0 34 ................................ CAGGCGCTTGTCGTGATGGGAGAGAAGGACGGTG 2644143 32 100.0 33 ................................ ATAGAGCTCCTTGACGTATGGCGGATCGGTGAA 2644078 32 100.0 33 ................................ TCCCCACTTCCCTGACCATGCCCCGAGAATCGA 2644013 32 100.0 34 ................................ CCCCGGATCTACACGCAACAGATTTGAAAAAATA 2643947 32 100.0 33 ................................ CTTCGGCACTCGTCACATGAACGACCGCCATAA 2643882 32 96.9 35 ........................A....... ATTATCGGGCCGATTATGAATTACCTGATCGCGTG 2643815 32 87.5 34 ...........A..A..G......A....... GTTGATCAACGCCTGCAACAATTCCCTAAAATGT 2643749 32 84.4 0 .G.......CCT............A....... | ========== ====== ====== ====== ================================ ====================================== ================== 73 32 99.6 34 GTCACTCCCTTCGCGGGAGTGTGGGTTGAAAT # Left flank : GATGTCAACACGGAAACGCCCGAAGGTCGGCGAAGACTTCGACACGTTGCCCGGGAATGCGTGAATTATGGTCAGCGGGTCCAGAACTCGGTGTTCGAATGTCTCGTTGATCCGGCACAGTTTGCAAAGCTTAAACACTCCCTGGCAGGAATAATCGATAAGGAACGGGACAGTGTCCGGTTTTATTTTCTCGGCGCCAACTGGAAGAACCGGGTCGAACATCTCGGGAGCAATACCGGATATGATCCCGAGGGCCTCCTGGTAACGTGATGCGTGCGAACCGGAAGCGATCATGGTTCTCCCCGAAGGTTCGCGGAAATTTTTCCGGTTTTCTATTTATTTGATTCCCATCCCCCGCAAGATTTGAAAGGACTTTGAACTATCTAAGGATTTATCGAAAAAATACGTAAAGGAAAATCCAATTGTTATTATTCGGGGATTTCTCATTTACTGCACATACATCAGGTATTTCTTCATGAACACTTAACGAGTATTTTACA # Right flank : TGGACATACTGATTCAGGGAAATGGGATCCACCAGTGCCCTGCACCCTCACTCTCCCGATCCCAGCCAGATCCTCAAACCGGGAGTTCCTATACTGTCATTTTTCCGGGGCAATATCAGCCTCTGTAGGGGGAAATATCTCCAAAAACCCTCCCGTTCCAAATCGCTGTACTCCAATTCGCCAAAAAGTGCGATCCTACGGAAACCGATTCTCCAAAATGGCCTCTGATTCGAAAACGGAACGATTAAAATGGATTTTGTTTTGGGCAGTCTGACTCGCGGGAAGATCCCGTGTTTACGACGATAACCCGCCCAACTCAGTCCCCCATCTCCCGCACCCGGGACTCTTGCAGGGATTCGATGCCGGGGATCCGCTCAGGTAGTTCCTGACCACCTGCTCCGCTATCTGGTGGGCATAGATGGTGAACATCTCATCCGGCACCTCATCGATCCCGAACGGCAGGTCGAGATTGTAGATGAGATCGGCCCGGACGATCTCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTTCGCGGGAGTGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //