Array 1 253343-252171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZX010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 1150 NODE_2_length_638973_cov_19.1895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 253342 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 253281 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 253219 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 253158 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 253097 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 253036 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 252975 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 252914 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 252852 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 252749 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 252688 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 252627 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 252566 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 252505 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 252444 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 252383 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 252322 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 252261 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 252200 29 96.6 0 A............................ | A [252173] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 271334-269475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZX010000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 1150 NODE_2_length_638973_cov_19.1895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 271333 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 271272 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 271211 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 271150 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 271089 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 271028 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 270967 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 270906 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 270845 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 270784 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 270723 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 270662 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 270601 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 270540 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 270479 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 270418 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 270357 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 270296 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 270235 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 270174 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 270113 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 270052 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 269990 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 269929 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 269868 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 269807 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 269746 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 269685 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 269624 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 269563 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 269502 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //