Array 1 190028-189594 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQNQ01000008.1 Ruminococcus bromii strain MCC714 NODE_8_length_608048_cov_109.399811, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 190027 36 100.0 30 .................................... ACGGTTATAAGATTGTAAACCCGCAGCCGT 189961 36 100.0 30 .................................... TGTCGGCTTACGCTCATCCTACAACCTCTG 189895 36 100.0 30 .................................... ACGACATTGTATATTTGCATCACGAATCGA 189829 36 100.0 30 .................................... CTCTTGGTGGCATTTGTGTAAGCAACCGAA 189763 36 100.0 30 .................................... CGCCCCAAGCGGCAAGCTGTTTTGTGTCTG 189697 36 100.0 30 .................................... AGAGCCTTGAAAATCAGCTTGCGAACTTTA 189631 36 80.6 0 .......................A.....AGA.ACA | TA [189598] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.2 30 GTTTTGGCTCTCTGATGAATATTGATAAACTTATAC # Left flank : AATGTGATGAAATTGATGCGTTATCCAAAAGCGTGAAGCCCGGGGATACAACAAACCGAGAGGCGGTTGCGGCACGAAAATATTTTGTTGCATTTGAAAATTGTGATACACTTTTTGAAACACTTACACATAGCAATCGCAAGAGCTTGATTGATTTGCCAAACCAAATTATTTTGCAATCAGATAAAAGAAAGCAATATTCGCAATTTAGAAAAAATCTGATTAAATCAGGTTTTATCATGGTGCGATTTTCTGTATATGCGAGAACTGTCAGAAATAATGATGATGCAAAAAAGTATTCAAAAATAGTTAAAAGTATTTTGCCCCCATCGGGTTCGGTACGATTGCTGATAATAACCGATCGTCAGTATGACTCTATGGAAATTTTGATAGGAGAAAAGTATGCAGAGGAAAACTATCTTGACAAAAGAGATATCATTGAATTATAATATATTTGTGTTTGAATTGTCAAAACCGCCTACATTCTACAAGATGTAGTG # Right flank : GCTTGTGGAATTCTGTTCTGCAAGTTGCTTTTTTATATCCAAAGGGGAGATAGAGGGACGGCGTTCTTTGGTATAATATAGTGGACAGTTTGGAACATCGGGCAAAAATAAAATTTTTTTTGCAAATTGCAATAGCAAGTTAAAACAGTTTTTTGTGGATGAAATTGCAACCACAGGCACAAAGCATATGCACATTTTCATTTACTCAAAATCGCCGATTCGCCTTTCAACATTGAAGAACAGATTCCCTGTTGCGCATATTGACAAGGCTAACGGCAGTGTAACGGAAAATCGTGACTATCTCCGCAAGGAGGGCAAGTGGCAGGGTTCTGATAAGGAACAGACGAATCTTATTGATACCTTTGAAGAGGTTAGTGATGTTCCAAAGCCTGTTGATGAAAATTCTCACGATATGTCCGCTCTGATTGAAGAAATCGAAAACGGACTTGATACCTACGAAATTATCAAGCTCCATCCAAAATATGCCTTTAGGATAAAAG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGCTCTCTGATGAATATTGATAAACTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 8821-9054 **** Predicted by CRISPRDetect 2.4 *** >NZ_WQNQ01000027.1 Ruminococcus bromii strain MCC714 NODE_48_length_165481_cov_83.107368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8821 36 100.0 31 .................................... TTACTGTGCTTGCAGAGGTCAAAGTTAATCC 8888 36 100.0 29 .................................... GATTGACCGTAAACGCAAGACAAGGATTA 8953 36 100.0 30 .................................... GGTCAAGTTCTTCCCACCAAGTAATAGCTA 9019 34 88.9 0 .......................T..--.......T | A,C [9040,9052] ========== ====== ====== ====== ==================================== =============================== ================== 4 36 97.2 30 GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Left flank : TAAGTGAAATATCCGTGCTTGTTATTGAAAGTACAGCTGTTTCGGTTACTGCCGCTCTCCTTTGTGAGCTTGTGCTGCGAGCTTTCTAAGGAAAATGATTATGATTTTCAGTTCTGCGAAAGTATCGAAACAATGGCATTAGTAAAATTGTTTTCATTTGCGCCTGCAGATGCCTCGGATGATAATGTCGGTCATCTTTTAAGATATTTCAAACTTATGAAAGAGTATCTTGGAATAAAGTGTTTTATTGTTCAAAATCTGCATATTTATCTTGATGACAGTGAATGTGAAAATCTTTTGGAATCCGCCGTTATGCACGGTATATATTTGCTTAACATTGAAAACTCAGTGCCGAAAGAAGTTTCTGAATACGAAAAACTTGTTGTGATTGATAATGATTTATGCGAATTTTATTGACAATCATTATACAAATGTTATAAAATATCCTTATAGATTTGCCGTGCACAGTATAGTGGGTGCATTTTATTCCCAATTTGAGG # Right flank : TTTTACTCGTGGACTGTGAAAAAACAGCATTGCAAAAAACAATATGGCACATAACCGTTATCACTTTCGGTTATGTGCCTTTTTATGTGCCTTTTGTAGTTTAATAAGTTTGTTAAGAATACCACGATTGATTACAGTCCAAAACAAGGAAGATTTCAGTGCGTTAATTTCCAAAGTGAGTTCCACCATGAAAGTTACTTTGGGGATTAACTATTTACTTTTTTGTTTAAGTTTGCGGTAAATATGAATTGTATAATCCATTTTATTGTGTTATTATGTAGTAAAATGGTGTGCAACATTAGTGTTTTGAAAAAATTATGTTGCTGAAATTAAACTTGAAATAACTGACGGGTGGCATATGGTTCGCAAAGTTGACAAAACAAAGCTTCTGACTGTTGTCGGGATAATTATATTCCTGTTTGGAGGTGCGGTGAGAATTTTTTCTCATCTTACTTCCTCGGCGGACAATTATATTGAAAATTTTGATGTTATTATCTTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //