Array 1 141635-142665 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZOL01000005.1 Pseudomonas japonica strain DSM 22348, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 141635 28 96.4 32 ............G............... AACAGGCCGCTCTCGCGGATCATGTGGCCGAT 141695 28 96.4 32 ............G............... AGCACCGGCCCTTCGTCGAATTGCTGACCTGC 141755 28 96.4 32 ............G............... GGCAGGTGTTGGTCCGCTGTCTTCGCGTTCGT 141815 28 96.4 32 ............G............... GGAGAGAGCCAGGTGTCATCGTTGGCGCTGTC 141875 28 96.4 32 ............G............... ATCCATCCAGGTGGTTTTCTTGAGCATCGCGG 141935 28 100.0 32 ............................ AGCGCCCGTCAGGCGCAAGAAATGCGTCACCC 141995 28 100.0 32 ............................ GAACCTCCTGCAGCAGCTCGCCGGCAAGATCG 142055 28 100.0 32 ............................ TGATCAACTCGGCGCCAGGGGCGTTGGACACG 142115 28 100.0 32 ............................ TGGGGTTGGCTGACTCGACCCTTCCCAAGCAG 142175 28 100.0 32 ............................ AATGGAAGCGGGTCGGCAATGCTGGGCGCCTG 142235 28 100.0 32 ............................ AGGCCAACGAGTCGGACGCGAACCTGATCACG 142295 28 100.0 32 ............................ CATGAACATGATGTTGCCGGCCTGCTGGCCCA 142355 28 100.0 32 ............................ AATCTGCCGCCCAGCGGCTTGGGAGTCGGCAA 142415 28 100.0 32 ............................ GCCAAGCTGACCAGGCTGACCACGTTGATCGG 142475 28 96.4 32 ............G............... GAATCGGAAAGGCGGCTGCGCTGGCGGGCGGA 142535 28 96.4 32 ............G............... CAAGCCCAGCCATGCGCTGGGCCGAGGCCGTA 142595 28 100.0 14 ............................ ATTGCACGTAGATC Deletion [142637] 142637 28 75.0 0 C.G........A.C...T...G.C.... | G [142659] ========== ====== ====== ====== ============================ ================================ ================== 18 28 97.2 31 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GGCGCTGTCCGGGCTGCAGGCGCTCGACTGGCTGACCGGGATGCGCGATCACGTCGACGCCAGCGATAGCCTCGCCGTGCCAGAGGCGGTGAAGTACCGGACGGTGAGCCGGGTGCAGGTGGACAGCAATCCGGAGCGGGCTCGTCGACGGTTGATCAAGCGGCATGGCATCAGTGAGGAGGAAGCTCGGCAGCGGATTCCCGACAGTGCCGGGAAACGCTGCAGCCTGCCGTTCGCGACCTTGCGCAGTAACGGCGGCGGGGAGGTGTTTCGCCTGTTCGTTCGGCAGGGCTCGCTGCTGGATCAGGCGCAGGAAGGGACGTTCAGTGGATATGGGTTGAGCGGTACGGCTACGGTGCCCTGGTTCTGACCCTTTTTTCTGGAGTAATTTGAGGGTCTTTTGAAATCAATGGGTTACGGAGGGCTCTCAAAAGAGGGTTTGAAAGCGTTTTGGGGGTAGTTCTCCTTCAAAGACAACAGCTTGAAGGTGAGCTGCTCTT # Right flank : AAGAGTTAGGCCAGGCTCCCCGCCTGGCCTAGCTTTTTTTCGCAAACCCCAACACCGGGTGATACCGCCACCCAAAGGTGCTCTGATAAACCTTCACCGTCGTAAACCGCTCAGCACAAACCGCCAGCGGCAACTCAAGTTCCTCAGCCAATTCCTCCAGCAACCCCATCACATCATGCCGCCCCCAGGGCGCGATCCCGGGCCCGAGCTCACGATCCAGATCAACCGGGTCGAGCAACTCGGAACACTCCAGATAAACCCGCGACTCATTGAACCGTCCCGGCTCATGAATCCGGTGCAGCACCAGTCTTTCCTGGTCCTCATCCGGCAGCAGCACCAGCTCTTCCTCGCGACCGGCATTCTCCCGAAACGGCTGGTGCTGCGGCAGCACCCAGGTCAATGCCGCCTGCGGAAACTGCCAGGCGCAGGCGGCATCCAGGTCGAGCGCTTCGCGACCGACTCGCCGGGCGAACTGCGGGACCGCGGCGCGCTCCTTCGGC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 147311-147519 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZOL01000005.1 Pseudomonas japonica strain DSM 22348, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 147311 28 100.0 33 ............................ AGCGAAACCGACAGGATGGGCGAGCGGGTCAAG 147372 28 100.0 32 ............................ TGACGTGGCCGGAGTGATTGATTGCGTACATC 147432 28 100.0 32 ............................ ACGCCGAGCTTGAACATTGCCGCGGCAATTCG 147492 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTTCACTGCCGGGTAGGCAGCTCAGAAA # Left flank : GCAGAAACCCACCAGCACGCCGGCCCGGGCCAGCTCGCGCATCGCCGCTTGGGTGACCGAGGTGCCGGTGCCGAGGAGGATGGTCGTGGTGTTGGCGATCGGGATGTTCCAGTACAGCGACTGCTTGCCGGCGTCGGTGACGTACTCGACGCGACCGCCATTCACCAGGACGCGGCAGTGTTGCAGGTAATAGAGGTTGGCGCGCTTGGAGTGGAGGATGGTCTTGAGGTCGGAGGAATGAATGCCGTCCATGGTGGCAACCGGGTGTCCGTTCGGGTTGTTTGGCAGGTGGGGAGTTATAGCTGGGTTGATGGCTATGTGCTGGTATTTTTGTTGCTGATTGTTTGTGCCTGGGGGGAGGGTGTTGGGACCCTATTTTTGAGGAGGGTTGGTGAGGTTATATAAATCAATGGGTTACGAGGGTGGTGGGGAATAGGGTTTGAGAGGGTGGGGATGGGGTTTTGCTTTTTTTATCAGAGGGTTGGTAGGGTTTGGGGGTA # Right flank : AGGTCGCGCCCGGAGCCCACTGCAGCGGTTTGCATTTAAGGTTTTTACGAGACGGCCCTGAAAATCTTGAGCAACTGATCTGGTTGCTGGAAAAGGGTGAGCGCACAGCCATAGCTGAAAAGTTAAGAAAAAATCGAGAAAATTGCCTGAACTGAAGATTTTCGTCGGGCGCTCAAGAAAAAATCTGCGCTGCCAAGTAAATGAAAGGAAAAATTCATGCGCTCAGTAGGCTATGGGTTTCTGTGCGACAGACTGGGCTGTTGTGCAGGTGCATAGAAAGAGGGTTTTGGTGGCGGTGCTAACAGCTGGAAAAACTCACTGTCGGTTGTTTTCACCTACCAGGTGAGTCTTGCCTTCCAGTCCCCGTCTCAGTGACATGATCAATGACTTAAGCGCGCGCTCATCTCGTACGGTTGACCCTTTTTCTGAAGCAGTATGCTGGGGTTAGAGAAATCAATGACTTATGAAACTGACAGAAAAAAGGGTCTACTGCGTCTGAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 148066-149597 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZOL01000005.1 Pseudomonas japonica strain DSM 22348, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 148066 28 100.0 32 ............................ ATTTCGGCGGCCTGCAGCGCCTCTATGCCGAC 148126 28 100.0 32 ............................ TGGTAGAACGCTGCTAATGCGTTCTGGTGAGT 148186 28 100.0 32 ............................ TCGAGCGTGCGAACGCTGGCCGTCGCCTTGTC 148246 28 100.0 31 ............................ TTGCGGCGCGCCTGGCTGCCTCGCCTCGGGC 148305 28 100.0 32 ............................ TCGCGATCCGGGCGAGTGGTACCGGCCAGAAC 148365 28 100.0 32 ............................ ACGATCAGGTCAAGGCCGAAAGTCATCTTCTG 148425 28 100.0 32 ............................ GCCAAGGCCAAGGCATTCTCCGACATGTGGTC 148485 28 100.0 32 ............................ AGGAAGATGTCGGCCTCGGCCTCCATCACGTC 148545 28 100.0 32 ............................ AGAACGAGAAGGGCTGTAGGTTGTGTATTGCT 148605 28 100.0 32 ............................ AACTGAAGGGCGTCGGCCAGATGCTAGATATC 148665 28 100.0 32 ............................ TCCAAAGCGTGGTCGATGGTGCCGCTGATATG 148725 28 100.0 32 ............................ ACGCGGGGCACCGTGCAGGAAGTACACGCCAT 148785 28 100.0 32 ............................ GCTCAGGCGGTGCAGCGCGCCCGTACCCTGAG 148845 28 100.0 34 ............................ AAATATGTGGGGCAAGGTTGCACTATCGTTCGCC 148907 28 100.0 32 ............................ TTCGACACGAAGGCAGAAGCCCAGCGATGGGC 148967 28 100.0 32 ............................ CGCACGCACGGGGCACCTCTTGATCAGGTGTC 149027 28 100.0 32 ............................ AGTCGAACGAGACGGACTTGGGCTTCCTGACG 149087 28 100.0 32 ............................ CTCCCCCCCGTCAGCGGCCGGCCATTCACGTC 149147 28 100.0 32 ............................ GTAGGCGTGTAACCCAGTGACATAACCCCTCC 149207 28 100.0 32 ............................ TTCGATATTGATCAGCGAGGGCACCAGGTTCT 149267 28 100.0 32 ............................ TGCTGGGCGTTCGCGAAAGCCTGGCGCACCGG 149327 28 100.0 32 ............................ ATTCTGGAAATCATGCTGCGCAGCTATCAGCG 149387 28 100.0 32 ............................ AGAGGCAACTTGGCGCCGGCGTCGAGGCCTTG 149447 28 100.0 32 ............................ AACGCGCACCACGGCGCAATCCCGAAGTTCAA 149507 28 100.0 32 ............................ TCGTGCAGCTGCATTTCCCCGGTGGCGAGCAT 149567 28 89.3 0 .........................GGG | G,A,T [149588,149590,149592] ========== ====== ====== ====== ============================ ================================== ================== 26 28 99.6 32 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : CGAGACGGCCCTGAAAATCTTGAGCAACTGATCTGGTTGCTGGAAAAGGGTGAGCGCACAGCCATAGCTGAAAAGTTAAGAAAAAATCGAGAAAATTGCCTGAACTGAAGATTTTCGTCGGGCGCTCAAGAAAAAATCTGCGCTGCCAAGTAAATGAAAGGAAAAATTCATGCGCTCAGTAGGCTATGGGTTTCTGTGCGACAGACTGGGCTGTTGTGCAGGTGCATAGAAAGAGGGTTTTGGTGGCGGTGCTAACAGCTGGAAAAACTCACTGTCGGTTGTTTTCACCTACCAGGTGAGTCTTGCCTTCCAGTCCCCGTCTCAGTGACATGATCAATGACTTAAGCGCGCGCTCATCTCGTACGGTTGACCCTTTTTCTGAAGCAGTATGCTGGGGTTAGAGAAATCAATGACTTATGAAACTGACAGAAAAAAGGGTCTACTGCGTCTGAATTGTGCTTTTGCTTTTGGAATCAAAGGATTGTTAAGGTTTTGGTGTT # Right flank : GCCACTTGGACTATGAGCCGGCAGGCTCTGGGCCCGCATTGCACCCCTTCGCGAGCAAGCTCGCTCCCACAATGGGCGGTGCCAGGCCCGAATTCCAGGCACAAAAAAGCCGACTAAAAAGTCGGCTTTTTCTGGATCTTGGTGCCCCGAGGGAGACTCGAACTCCCACTCCTTTCGAAAACGGATTTTGAATCCGCCGCGTCTACCAATTCCGCCATCAGGGCTTGTGGCGGCGCAGTATAAAGAGGCCCCTACCGTTGGTCAATCGGCTTTCATGGTCAATTTTTCCGCTTTCGGCTAAACTTCCCGGCCCTGTCGAACCCGTACCCCATTGCCATGCGCGTCGCCGATTTTTCCTTCGAACTCCCCGATTCCCTGATCGCCCGCCATCCCCTGGCCGAACGCCGGGCGAGCCGGCTGCTGGTCCTCGATGGCCCGAGCGGCGCACTGGCGCACCGGCATTTCGGCGATCTGCTGGACTACCTGCGCCCCGGCGACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //