Array 1 88286-89778 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTKV01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SSH006 Scaffold2_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88286 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88347 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88408 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 88469 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 88530 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 88591 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 88652 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 88713 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 88774 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 88835 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 88896 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 88957 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89018 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89079 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89140 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 89201 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89263 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89324 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89385 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89446 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89507 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89568 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89629 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 89690 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 89751 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105910-107874 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTKV01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SSH006 Scaffold2_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 105910 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 105971 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106032 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106093 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 106154 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 106215 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 106276 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106338 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 106399 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 106460 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 106521 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106582 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106643 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106704 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106765 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106826 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106887 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106948 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107009 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107070 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107131 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107193 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107296 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107357 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107418 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107479 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 107540 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 107601 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 107662 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107723 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107784 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107845 29 96.6 0 A............................ | A [107871] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //