Array 1 174206-172556 **** Predicted by CRISPRDetect 2.4 *** >NZ_QETE01000003.1 Pectobacterium zantedeschiae strain PC2 scaffold00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 174205 28 100.0 32 ............................ GGTTGCAGAAATGGGAACGGTGGCGCTTTGCC 174145 28 100.0 32 ............................ ACCTGCAAATCATGCCAATTCGCATAAGTTGT 174085 28 100.0 32 ............................ ACAACACACGACGCTGATTAGCGTCAAAGTCA 174025 28 100.0 32 ............................ ACAACCGCCCCCGCTAATAATTTATGAGTACC 173965 28 100.0 32 ............................ AATTGGCGCAATTGCCTGCGGAAAGATCGCGG 173905 28 100.0 33 ............................ CGCTGCAAGCGACACTTTAATCACGTCATTGAT 173844 28 100.0 32 ............................ GTTATTGATAACGAGCCGTGGTTTTGCCTCAA 173784 28 100.0 32 ............................ GTCAACGTCAAACGAGTAGGCGATATCACGTA 173724 28 100.0 32 ............................ GTGATTAAGACGCGCGGCAACGTGGTGCAGAT 173664 28 100.0 32 ............................ GGGAGGCAGAGACGATGACCCTTCATGACGCT 173604 28 100.0 32 ............................ AGGAGGCGATCGCTAATCTGGTGTATGCCGAT 173544 28 100.0 32 ............................ TCTAAGCCATTCTTCAACAAGTCGGCTTCTTT 173484 28 100.0 32 ............................ TTCGGGCGCTCACCAGCCGAACTAAAGACATA 173424 28 100.0 32 ............................ TGAATCTATCCCCATTAACGAGGAAAGCCATC 173364 28 100.0 32 ............................ ACCTAGCCTGGATACCAAACCCATTGTGATTT 173304 28 100.0 32 ............................ ATATCGGTGCGGCGTTCGGTATTGACGATTAT 173244 28 100.0 32 ............................ TGATTCGTCGCATTCATAGTGCTTTCAACAAT 173184 28 100.0 32 ............................ GCAAAAAAGCGCCAGCGGTAGATTTCTTGGTT 173124 28 100.0 32 ............................ GTGAAAATGAATCACTATTCCCCCTCAATCCC 173064 28 100.0 32 ............................ CAGGCTGAAACGCGGCGGTTTTCTCATACATC 173004 28 100.0 32 ............................ CATAACGGGGGCGAATCAGGCGGCGGGGCTTT 172944 28 100.0 32 ............................ ATAACTGACCACACGGAAGACGCCACGTTACT 172884 28 100.0 32 ............................ TGTAGGCGTCGAATTAAATCGTTCATCCTGTG 172824 28 100.0 32 ............................ CTAATCATTGGTTGTTATTTCATGACTATGAA 172764 28 100.0 33 ............................ GAGCGAGCAGCTTTCGCATCTGTGATGTATGAC 172703 28 100.0 32 ............................ GCGACATGGTGCGTGATGGCCGTTTGCCTATT 172643 28 100.0 32 ............................ GCACGCACCCGAATGCGATGCTGTTCGCACGC 172583 28 82.1 0 ....................T...TCCT | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTACCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCTGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGTTGGAGGTAATAAACATTGGCACGTTTGGAATGCAGAATAGTTTTTAAGTCCGAAGGCCTAAAGGCGTTATCCATAATATATTTTCTGCCGTAATAGATAGTAGCCATGACGCCAGCGAAATAGATCGCAAGCTAACCATTTGATAAGGAAAAATATAATCATAAGAGACTAATGAAAATCAGACTATCACAGTTGTATGTGAATAATGGTGACCACAAAAAATATTACCCAAGCACAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTGGGGTTAAAAAAAGGGTTTTTATGGTGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGTTACA # Right flank : CGGTTTTAAGTGCCATTGTCTGGCTATTATTGAGGTAGCACTATCGTCTGTGCTCGATGTGTTATCGTCTTTAAATAACGTATTTTTGATTCCCCTTTTTCGTAACATTTTTAAATAACGGTTTTTTTTATGGGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAGGTTACCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAGGGAGTGAGTGGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGATTAGAAGATTATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTGCAGACGTTATGTACGCCTAACCCTAATCAATCGTGGAAAACGGCTATATTTGGCTGTTCCGATCCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 183158-183905 **** Predicted by CRISPRDetect 2.4 *** >NZ_QETE01000003.1 Pectobacterium zantedeschiae strain PC2 scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183158 28 100.0 32 ............................ TTTTTCGGATAAATCAATTGCCGCAATAGCTC 183218 28 100.0 32 ............................ CGAATTAATTTGATATGACTCAAGCGCATCGC 183278 28 100.0 32 ............................ GCACGCGCTAACGAGAAGAATGAATCCGATAA 183338 28 100.0 32 ............................ AAAACCGAAACTGACACCCGCGTCGCCGATGC 183398 28 100.0 32 ............................ GAAAACAAGCGGGGTTGTCGTGAATGATGACA 183458 28 100.0 32 ............................ TAGTGCGTGCGGTATTACTCGCCGCCGTTCTC 183518 28 100.0 32 ............................ AAAACCGAAACTGACACCCGCGTCGCCGATGC 183578 28 100.0 32 ............................ CAGCCAGATTATCGCCGAGCAGGTGATTCCAG 183638 28 100.0 32 ............................ TACATCAATAAAGGCACTCTGGATGCTGAACT 183698 28 100.0 32 ............................ GAAAACAAGCGGGGTTGTCGTGAATGATGACA 183758 28 100.0 32 ............................ TGGGTTGAAAATCATTTCAGCCGTACCGCGAA 183818 28 100.0 32 ............................ ATTTCGGTTTTAGCGCGGGAGAACGGATTACG 183878 28 78.6 0 .............C......T.C..TGC | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.4 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACGCGCTCTCTGCGTTAGAAAAAACGTCCTGGCTAAAAGGATTGCGGGATTACACACAGGTTTCTGAGTGTAATCCCGTACCTAACGACGCAAAGTTTCGCACTGTACGCCGCGTTCAGTTCAAGAGCAGCGCCGAAAGACTACGTCGACGTTCGGTAAACAAAGGCTGGCTGACGGAGGCGGAAGCCTCAGCACGAATTCCTGATGCGGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATTAAGAGCCTGTCCAACGGGCAGATGTTCTTTGTGTTTGTGGAACATGGTCCGCTACAGGACGCTCCCGTAGCAGGGCGCTTCTCCTCCTACGGGTTGAGCGCAGAAACCACCGTTCCCTGGTTCTGACCCTTTTTTAACGGCCAACGGTAAGCCATTGATTTTTAAATGCCGTTGGCCGCCTTAATAAAAAAGGGGTTTTCGCAAAAAAAACCATATTATCTTTAATAATCTGATGATTAGCGTGAAAATCTAACA # Right flank : CTATCGGGATACGCCTCTGATACCACTCGCCTCAAAGGGGTTATTCCCCATTCAGCGTAACGATCAGCGAACGGCTGCCGCCGTGGTTGCGATGTTCACACAGGTAAATACCCTGCCAGGTGCCGATATTCAGGTGCCCATTGGTGACAGGAATCGTCAGGCTGTTTCCCAGCAGGCTGCCTTTCAGATGCGCGGGCATGTCGTCGCTACCTTCATACGTATGACGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGTACCGTAGGGTCAGCATTCTCATTCATCGTTAGCGCCGCCGAAGTATGCTTGATGAACACATGCATCAGCCCGATTTTTATCTGGCGCAGGGCAATAACCTGCGCCAGTATTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCCATCCCCCTGCTATCAGGCTTCGCGCGCCAAAATCGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //