Array 1 289151-289911 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJZV01000004.1 Escherichia coli strain MOD1-EC1540 MOD1-EC1540_4_length_290133_cov_29.4606, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 289151 29 100.0 32 ............................. CTCTGTTGCCTTCACGGCATCGCGCAACCCTG 289212 29 100.0 32 ............................. CAAAACTGGTTTATCTCCCGCGTAGTCCGCCC 289273 29 100.0 32 ............................. TTAGCCCGGCCAGTAGATTTTGCTCGCTGCGC 289334 29 100.0 32 ............................. GCGCAGGTTATCCGCTCTGTGCTCATTGACGT 289395 29 100.0 32 ............................. GGACAACATCGTAGGGGAGTTATAACGTTCAA 289456 29 100.0 32 ............................. TCGTCAATCCTATGCCTGCTCATGAGCATTAT 289517 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 289578 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 289639 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 289700 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 289761 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 289822 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 289883 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATATGTCTCTTATACACAACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 64243-62628 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJZV01000016.1 Escherichia coli strain MOD1-EC1540 MOD1-EC1540_16_length_89735_cov_29.7495, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64242 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 64181 29 100.0 32 ............................. ACGCGGGGTAAGTTGGCGCGGTCCTGGTGTGT 64120 29 100.0 32 ............................. GAAATATAGCGTTAAATAGTCAGGTGACAGAA 64059 29 100.0 32 ............................. CCCCGCGCCGCGCATCGGGTACGTGTAGTCAT 63998 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 63937 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 63876 29 96.6 32 .........A................... GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 63815 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 63754 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 63693 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 63632 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 63571 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 63510 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 63449 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 63388 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 63327 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 63266 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 63205 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 63144 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 63083 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 63022 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 62961 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 62900 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 62839 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 62778 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 62717 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 62656 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //