Array 1 6639-936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEAP010000122.1 Streptomyces sabulosicollis strain PRKS01-29 NODE_122_length_20571_cov_13.9214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6638 29 100.0 33 ............................. TAGCAGTTATCCATCCATCCCGGCCGACTAGCC 6576 29 96.6 32 ............................G GCGTGATGACGATGATGGTCGAACCGTTCTTC 6515 29 100.0 32 ............................. GAGACCGGGATCCGCGACCGGATCGGCTACAT 6454 29 100.0 32 ............................. CCATCACAGACGCCTGGGAGGAGGTCAGCCGC 6393 29 100.0 32 ............................. ACGCGGTGGGTCGGTGACCACTCGTCACGCCA 6332 29 100.0 32 ............................. GTGACCAGCTCCACCGCCACCCGCGCCGACAT 6271 29 96.6 32 ............................G CCCGGCGATCGAGTTCCACGGCCCCGAATCGT 6210 29 96.6 32 ............................G TTCTTGTGGTGCAGACGCGGATGCGTCCCGTA 6149 29 96.6 32 ............................T GCCACTTGCGGCGTGGGGCTGGGCGTGGGTCG 6088 29 100.0 32 ............................. GCGTAGCCGGGCCGGTCCGATCCCCACGCGGG 6027 29 96.6 32 ............................T GCTCGGCGACGGCTGGCGAGACGAGCTGTCGG 5966 29 96.6 32 ............................T ATCCGCCGAGGGGTACAAGCTCTACCAGGCAT 5905 29 100.0 32 ............................. GTCACCTGATCCGTGTGGCCCATGGCGGCGGG 5844 29 96.6 32 ............................G CGCCGTTACGGCTCCAGATGGGTATTCGGAGA 5783 29 96.6 32 ............................G AGGCCCCCGGCGCCTGAAGGGGAGTCAGCGCC 5722 29 100.0 32 ............................. TCCCGGCCAGCCGCGAGATAGCCATCTGCTCC 5661 29 100.0 32 ............................. TCACCCCGGGCCGCATCGGACTGCGGACCAAC 5600 29 96.6 32 ............................G CACCGATCCGTCCGCGAGATGCTGGCCCACGT 5539 29 96.6 32 ............................G CGGCAGGCCCGCGACGGCGGCGCCGTCCTGAC 5478 29 96.6 32 ............................T CTGGCTGCCGAAGCCGAACAGCGCCGGAAGAA 5417 29 96.6 32 ............................G GTGTACGCCGCCCGCCGTGCCGGTGCGCTCTT 5356 29 100.0 32 ............................. GGCCCCCGATGTCGCCACACCGGAGGCCGCTG 5295 29 100.0 32 ............................. CCGACGCCCCCCGAGATCGCCGCGTCCGCGAA 5234 29 96.6 32 ............................G CACGCCTTCGAGCTGGAGGACCTGGCGACCGA 5173 29 96.6 32 ............................G TACCTGGTGCGAACAGCCCGCGCCCGCCACCG 5112 29 100.0 32 ............................. CGGGTCGGCAGCGGGACGAGATCAGCCTTTGA 5051 29 96.6 32 ............................G AACAGCGGCAGCATCCCGCCCCGGTTCGGGAT 4990 29 100.0 32 ............................. CCGATCCTGGGCCCGATGGGCGGCCACGACCT 4929 29 100.0 32 ............................. CGCACCGTCGCCGAGGTCACCGGGATCAGCGA 4868 29 100.0 32 ............................. AGGTGGTGCTGAGACCGGGGTCTGATGGGCTG 4807 29 96.6 32 ............................G CTCGCGGAGGGCGGCGGCGGTCAGGCAGACGC 4746 29 96.6 32 ............................A CACCGGATGGGGCTTTCGCGCGTATGGATCAT 4685 29 96.6 32 ............................G CGCAGATCGGCCGACTCGTCGGCTTCCGGGGT 4624 29 100.0 32 ............................. CTGTGACGCGCTCCAGCGCAGCCACCACCGGG 4563 29 96.6 32 ............................G GCGTGTGACACCTGTCAGGACTGCCTCCGGTG 4502 29 96.6 32 ............................G GCCCGCACCCGCACGGTGCGGGCCTTCGTCAT 4441 29 96.6 32 ............................T CCCGCACACCATCCGGCACACAATCGTGCACA 4380 29 100.0 32 ............................. GTAGAGCACTCTGCCACACGTTGCATGTAGAG 4319 29 100.0 32 ............................. CGCGCGGGGTTCGCACCCTTGGCCACCGTCTC 4258 29 100.0 32 ............................. ACCCGCGACCACGACCCATCGGAGGAGACCCG 4197 29 100.0 32 ............................. CGGCACAGCCGGACCGGGCTCCGGTGCGGCGC 4136 29 96.6 32 ............................G CGCAACGGCCTCTTGGCGGCGATCACCACGAT 4075 29 100.0 32 ............................. GGGTGCGTGGTGGCGCGCGGGCGGGAAGGGGA 4014 29 96.6 32 ............................G ATCACCGTGCTGCCCTACGAAGTCGCTGCGCG 3953 29 96.6 32 ............................G CCTTTGGACGAGCGGCGACCCCGAGACGAAGT 3892 29 96.6 32 ............................G CCGCCCACGGACTAGCGCCCCAGCGCCCGATC 3831 29 100.0 32 ............................. GGGGTCACGCCGCCACCCCCAGTTCGCTCGGC 3770 29 100.0 32 ............................. ACGAGCCACGATTCGCAGCGGGCGCGTCACCG 3709 29 96.6 32 ............................G TCGGGCACGTAACGGTCGCCGGAGGGCAGGGT 3648 29 96.6 32 ............................G GGCCCACGAGGCGCAGAGTTCCATGACGGGGC 3587 29 96.6 32 ............................G GCCCTGCCCCATACCCTGGCAGTGACGAGCTG 3526 29 100.0 32 ............................. GATAGGGCGACGATCAGGTTGTCGTCCGTGCG 3465 29 100.0 32 ............................. GGAGGTGGGCCGTGCCCGTGTCCCCGGCCATG 3404 29 96.6 32 ............................G CTGAGCAGCATCACCTGGATCCAGGTGCAGGA 3343 29 100.0 32 ............................. GCCAGCCGCTGCAGCGCGAACGGATCCACGGC 3282 29 96.6 32 ............................G TCGCATTTGGAGGAGGCTGATCGTGGCGTTCC 3221 29 100.0 32 ............................. CTCGTGGGAGGGGTGAACTCCCCTGGGTTCGA 3160 29 100.0 32 ............................. TCTGCGGTGCGCTTCGCCGCGATCTGGTTCGC 3099 29 100.0 32 ............................. GGCTTCGGACTCGAGACCGGATGTGGTGGCAC 3038 29 100.0 32 ............................. CCGCCGTACCCGTTCCTCTGCCCCGGCCACCC 2977 29 100.0 32 ............................. GGCTTCGGCCGGGGACGGCCGTGCGGGCGCCA 2916 29 100.0 32 ............................. CGCGGCCGGGCGTACATCCGGGTGTACGTCCG 2855 29 100.0 32 ............................. TGACCGTGCCGGGCGTTCTCGGGGTCGGCAAC 2794 29 100.0 32 ............................. TGGGTGCAGCGGACCGGCAAGGGCGGCCACCT 2733 29 100.0 32 ............................. GACGACGCCTCGCCGCACTCACCAACCCCGCC 2672 29 96.6 32 ............................T CCCGACCGGACCCATCGACCGCGAACCGCTCG 2611 29 96.6 32 ............................G ACGGATGCGGCCCGTCGCCTTGGTCCACTTGT 2550 29 100.0 32 ............................. CAGTCGGCCAGGGCGCCCGCTTCCGGGCCGAG 2489 29 100.0 32 ............................. CTGGTGGTCAGTGGGTCGGTGAGTGGTCAGAC 2428 29 96.6 32 ............................T GCCACTAGTGGCGTCGAGACGGCGTTGCACAA 2367 29 100.0 32 ............................. ACGCTCAGGTGGCCGACCTCGGCGCCCCGGTC 2306 29 96.6 32 ............................G GAGGACGAGCCGCCGATCGCGGGCGGGGATGA 2245 29 96.6 32 ............................A CGCCCCCAGGGCGCCGATCAGCGTGGTGAGGT 2184 29 100.0 32 ............................. AGGTGGCGGCCGCGTACGACGAGTGGCTGACC 2123 29 96.6 32 ............................T CCAGCTGATGGGACGCCTGAGCCAGGCCATCA 2062 29 96.6 32 ............................A GCGCGGCCCACCCGTGCGATGTACTGCAGGAA 2001 29 96.6 32 ............................G ACGGCCCCGAGAGTGGATCCCAGCCATCGTTG 1940 29 96.6 32 ............................G GGGGCGCGTCCTCCCCTCACCAGCGGCGGGCC 1879 29 100.0 32 ............................. TGCGGTGGCACTGGCACGACCCTGCCGCCCAT 1818 29 100.0 32 ............................. TGCGCCACCGCCAGCCGCGCGATGATCCGGGC 1757 29 100.0 32 ............................. GTCACCCCCGGCCGCCGAGCTGCTCAGTGAGC 1696 29 96.6 32 ............................G CCGGGCCAGCCGCCGAGGGGCCAGTTCGAGCC 1635 29 100.0 32 ............................. CAGGAGGCCCGCACGACCGACGCTGCCGAGCT 1574 29 100.0 32 ............................. TGCGGGCGCTCTCCACGGCGATGCCCGCCGCC 1513 29 100.0 32 ............................. GCCATGTCCACCACGATGGGCAGCACCGGCGC 1452 29 96.6 32 ............................A GCCGCTGCACTGGCGCGAAGAGGTATCTGCTC 1391 29 100.0 32 ............................. CGCCATGGGCACCAGGCGCGGCGGCTGACGCC 1330 29 96.6 32 ............................T TCATCGGCCCGTCCGGCTCTTCTGTGTCCGGA 1269 29 100.0 32 ............................. ACCGGCACCGGAAGCGGCCCGTTCCCGCAGCT 1208 29 96.6 32 ............................G ACACCGGCACCGACTTCCACCTCAACTTCGCC 1147 29 96.6 32 ............................G ACGCCCGGCATGACCCCGGCCCTGCATGGCGA 1086 29 100.0 32 ............................. GGCCGGTGGCCCGTCCGACGTCTTCCCATGAC 1025 29 96.6 32 ............................G CCCTGACGTCAGGCATGGTCAGCGCCATACGC 964 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 94 29 98.3 32 GTCGGCCCCGCGCCAGCGGGGGTGGTTCC # Left flank : GACCGCACGTACCGCCTCGGCACCCTTTGGCCATAATCGCTGAAAGGCCGGTGTTGCCTTCCCGCAATCGTGCACCCCACACAGCCAAGCGAAGAACCCTCGCCCCCGGCCCTCTCCTCCCGCAACATCGTCCAACATCCCTTTGGTAGACGGGGCCAGAAAGCCGTCCCACATGCACTCAGCAACCGCCGCCGTATCCAGAAGATGCGACAGAAGGAGATTCTTCCTCCCACCCGCCTTCTCCTCAGACTTCCCCCAGAGCACCCCAAGGGCCGCCAAAACATCCAGGCCATCGCCAGACAAGGAACGTCCCACCCCATCTTCCTCTCTGCTCCGTAAGCTAGTCGGGCACCCTAGACCTCACCACTGACAGCACCCCCGAAATGATCGCCAAAGCCCGCTTCCACCACCTCACCGACACGGACTCCGCCACCATGTACGTCAGAATCGAACTAACTGAAAACAGCCCTGATCACAGATAGAATCCCAGGTCAGCAAGT # Right flank : CAGCTTCTGCACTGTCCGCCAGTCCTTGGCTGGTCGGCCCCGCTGATGGCGATTCTTGGAAACGACCGGAGGTGCTCCTTGCCCCAGTTCGTGACATGTTGAAGCGTGTGGGGAGAGTGGGGAGCGAAGAGCGTGCATGGGCCGTTCGGACAGGGAGGCGGCCTTGGGTTCTCCCGTCGGTGTTGTGGCCCGTTCTAGTGTGTCGCGGTGAATAACAACGCTCTCGTCGGTAGTGAGGTTCGCCTCGTCCCGTTATCCACCGACCATGCCGAAGCCCTCTTCCCTGCTGCATCCGACCCTGAGGTGTGGCGATGGATGCCGCGGCCGCGTCCTGAGTCTGTGCCGCAGATGCGCGCGATGCTGAGCCAGATGATCGCTGACCCTGCCCGGCGGTGCTTCGCGGTGCAGTGTTGTGACGACGGCACCGTTATCGGTTCGACCAGTCTGTATGACCTCGATCTGGACGAGAGCCGCGCTGAAGTCGGCGCGACCTGGTTCGA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18338-16605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEAP010000122.1 Streptomyces sabulosicollis strain PRKS01-29 NODE_122_length_20571_cov_13.9214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18337 29 100.0 32 ............................. CCTGGTGTGACGAAGTCACACCGCGTCATGTC 18276 29 100.0 32 ............................. GCCAACTTCGCGGGCACCGTGGCCGACATGAC 18215 29 100.0 32 ............................. TGTGTGGTCGCCGCGGACGCGGATGACGGCAG 18154 29 100.0 32 ............................. GACTCCTGCGCGTGCGGTGACGGCCGAGGTAC 18093 29 96.6 32 ............................G GGACGTCCACGCGCCGAGGCCCGCTCGGGAAA 18032 29 100.0 32 ............................. GGGCGGCCCTCGCCATCCTCATCGGCGGCAAC 17971 29 96.6 32 ............................T TGGGTTCGCCGCCTCGTACAGCACCCTGGCCA 17910 29 100.0 32 ............................. GTGTTCACCACGGTCATCCCGCGATCCGAGCG 17849 29 100.0 32 ............................. ACCGCGGCGGCGGCCAGGCCGACCACGCCCCC 17788 29 96.6 32 ............................G CTCACCGCTGCTGCCCTCCGTTCTGGCGGGCA 17727 29 100.0 32 ............................. TCGTGGTGCGGGACGACCAGTCCGAGGCGGCC 17666 29 96.6 32 ............................G TCACCCAGCATCCTGCCGACGACCAGCTCCTG 17605 29 96.6 32 ............................T CTCGGCCGGGTCGCGGGGGCGCTCCTCGGGGT 17544 29 89.7 31 ..........................CGT CCTTGCGCACATCCGCCTTCGCGGTCAGCAC 17484 29 100.0 32 ............................. GCCCAGTAGAGAACGTGGCCCTGGAGTTCATC 17423 29 96.6 32 ............................T CTTCGATCGCATTGCAGGTGTCCTCTGCAGTG 17362 29 100.0 32 ............................. GCGCCGGAAGGCTGCTCGACCCCCGGGATTCC 17301 29 96.6 32 ............................G ACCTTCGCCGTGTGGCGGCGCATGCGCTTGTG 17240 29 93.1 32 .......................A....G CGTTCACCTGAGCGGCGGGGGGCTCGGCTCGC 17179 29 100.0 32 ............................. GGGGTGCCGACGACGAAGTCGGTGTGGCACTC 17118 29 96.6 32 ............................G ACGTGGTCCCGCAGCACCCCTTCCCGCGTGAA 17057 29 100.0 32 ............................. TGGAGCGGAATCTGGAGGATGAAGGAGAAGGA 16996 29 96.6 32 ............................G TGTCGACATGATCTCGCCGAGGGAGTGGGCCG 16935 29 96.6 32 ............................G ACGAGCCAGGCGCCACAGCCGAGTCCGGTGAT 16874 29 96.6 32 ............................G CCCACCACACGCCTCAACGTCGTCCTCTTCGA 16813 29 96.6 32 ............................G CGGTGACCATCTGCTCTAGTTCGTCGACTGCG 16752 29 96.6 32 ............................T CATCGACGCCTTCCTGCCGCACATGGACGGTA 16691 29 89.7 29 ......................C...C.G ATCGGTGGTTTGGGTGCGTCGTAGGGCGG 16633 28 72.4 0 ............G.-.AT.CAC......G | C [16608] ========== ====== ====== ====== ============================= ================================ ================== 29 29 96.6 32 GTCGGCCCCGCGCCAGCGGGGGTGGTTCC # Left flank : GGACGTCACGGCCTCCACCGACCTTCAGGTCGAAGTGCCACCGGTTCTTTGCGACCTTCGGCTCCGGAACCTGCTGGAACCACACCCTCGGTCCACGTCCGGCCAGATCGATGATCGACTCCGGAATATCCCCGGCACCGGCTGGCAACTCTGCCTCGGGCACCCCCACCGCCGCCCAGTAAGCACGCCACGTGGCGTGCCCGCCCGGCGGAGGCTCAGGCACGTAGCCCGGGGCCTCGGCCCAGAAAGTCACCATTCTCTGCGGATCGGAGCAGTCGATCGTCAGCTGCACTGTCATCTCCATGCTCGGAGCATCCCAGACAGGTCTGACAGACGATCCACTTTCGCAACAGGCCCTAACGAGCTGGTGCACGGTTGGCGGTGAGACATCGCGGACTTCGGTGTGACCTGTGTTTACGTCTGCCGTGTCGAGTTCAGGTCCACGGCGCCTGCTGATGGGACAGCAAGGCCGGCGATGGCTTGGATGGTGTCGGGGATCG # Right flank : GTCCCCGGCTTTCGGCGTTAGCGTCGGTTGCGGGCTGATAGCAGCAGGCCGTCGTAGTCAACAGGTCTCCAGCGGTCACGGCCCGCGGTGCGGACAGCCCAGCCTTGTTCGTTGGATGCGGGTTCGACGAGGACTGCTTGGCCGTCGCCGATGCGGGTGGCGAGGGTTTCCCAGAGGCGGTCGCGGATGCGGCGGCTGGGGTTGCCGACGAAGACTCCGGCGTTGACTTCGACCAGCCAGCGGGTGAGATGGCCTCGGAGTCCTTCTGGTGCGGCGATCAGCACGATGACGGTCATGAGGGCCGCTCCGGAGACGCAGGCTCGTCGAATTCGGGCCCGACAATCGCGATGTGCTGCTCGCCCACATCTGCAGGAGTGATGGTCTCGCCGCCTGCCTGCGACGGGTGTTCCAGTCCTTGCGCGGACCAGTTGATTCCCGCTGGGACCGTGCCGAGGTGCTCGTCCCAGAGTTCGCTGGTCTCGGGGGTGTCGAAGTCGGTG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2918-3982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEAP010000427.1 Streptomyces sabulosicollis strain PRKS01-29 NODE_427_length_7879_cov_18.247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2918 28 75.9 32 CC.AT.A..-..................C GCCTACCTTGCCGAGAGCGCCGTGCCCCTGCT 2978 29 96.6 32 ............................T CTGAGGAGCAGATGGCAATGGCCAGCATCACG 3039 29 96.6 33 ............................C TCCCGAGTTTCAGGGGCTGATGGTCTGGCTCAG 3101 29 93.1 31 ............T...............T GCCGCGGGCGGCCGGTGCCAGTGCACTGGGG 3161 29 100.0 32 ............................. GCAGGCCGAGACGGCGTAGCCCCGGCCCTTGC 3222 29 89.7 31 ........................T.CT. ACATCGGGGGCTACACCTCCACTCTGTCTAT 3282 29 100.0 32 ............................. GGAGCATGCATGGCCAGACGTTCCATATGGGC 3343 29 100.0 32 ............................. TCGCACGCCGTCAGCTTCACGGACGTGCTGAT 3404 29 96.6 32 ............................C CTCAACGTGACCGTGTCCGGCTCCTTCGACTT 3465 29 96.6 32 .....................C....... CGTGGTACGAGGACGACCCCCGCCGACCCAGC 3526 29 100.0 32 ............................. TTCGATTCCGGCGGGTGGCTCATGCCTGGTGC 3587 29 96.6 32 ......................G...... CCGGTACGCGAGCACCTGACCCGCTTGCTGGG 3648 29 100.0 33 ............................. TACTGATCGCCGGGCCTGCACCTCCCGGCATCC 3710 29 96.6 32 ............................C TGCTTCCTCGACGACGAGGACATGGCCCTGCT 3771 29 93.1 32 ...........A.......A......... CGCTGGTGCGCCACAGCCGCGGTCGACGCAGA 3832 29 86.2 33 .C.....................A.C..C GGTGTCGACCAGCACGTTGGTGCCGATCCAGCG 3894 29 82.8 32 .......TT..A.......A........C CGCGCGGGTCGTCCCGATCCGACCAACTGATC 3955 28 86.2 0 ..................C...-A....A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 93.7 32 GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Left flank : GGGCTCGCAGTGCGGACGGACCTGATAACGGCGAAGCGCCCGCGTGAACGTCGAGTACGCACCCTGATAGCCGAGCGCAGTCACCTCGTCGAAGAGCGTCGAGGCCCACAAGTGGGGATCGTCTGCGAGCCGCTGCCTGCAATACGGCAGGAACGGCACGAACGCATCCGGCGCCTGGCGTCGCTGGCCGGGGACCCGCTCACCGTTCAGATAGGCGCGGATCGTCTTGCGATCCCGGCCCAGGTGCCGTGCGATCGCCGAGATCGTCCATCCCTGGCGACGCAGAGCGTGAGCGTCCACGTCTTCCTCCCGCGTGAGCATTCAGGCCCCCGACCAGGCCGAACTCGTAACTCACGCAGGCTCTCCACGACACACCCAGGCTCATTCGACACGCCGGGCAACATCACGCGAAAAGATCGAAAAGGTCACACAAAGGGTGGGGAGATCAACAGAGCAGGTTTGCCCCACGGCTGAGCAGCAGGTGGGGAGATTCAAATAGC # Right flank : AGCGAAGGCCGAACCTCACAGTGAGCGATTTCCAACATCCCGATACTGGCCGCAAGTTGGACGCCCCTGCGCAACGACAAAGCTCCTGGTAGACGGGTTCTCGACCAAGATCACCCGCGCCTGCCAGGAGCTTCGCATGCTTGTCTACTCATCCTCGATCGATCTGTCCAGCCGAACCCTGCGGTTCCTTACCGGTCAACTGGCCGCGCGGCGGGCGAAGATCGGTACACGGTGGCGACGTCTGGCCGTCGGCCGCCAGGCTCTGCTCGCCCTCGCGCACCTGCGGTGCGGTGATACCTACGCCCAGCTCGCTGCCGGATTCGGCATCGGGATCGCCACGGTCTACCGCTATATACGCGAAGCTGTCGAGGCCCTGGCCGCCCTCGCGCCTTCACTCGCCGAGGCGATGCGGACGATCCGCGAGAAGGCGTTCGTGATCCTGGACGGCACTCTGCTGCCGATCGACCGGATCGCTGCGGACTCCCCGTACTACTCCGGGA # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //