Array 1 65311-63647 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWI01000023.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-007 NODE_23_length_88270_cov_36.1679, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65310 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 65249 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 65188 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 65127 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 65060 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 64999 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 64938 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 64877 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 64816 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64755 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64694 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64633 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64572 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64511 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64450 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 64389 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64328 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64267 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64206 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64103 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64042 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63981 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63920 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63859 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63798 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63737 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63676 29 96.6 0 A............................ | A [63649] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82695-81569 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWI01000023.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-007 NODE_23_length_88270_cov_36.1679, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82694 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82633 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82572 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82511 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82450 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82389 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82328 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 82267 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82206 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82145 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82084 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82023 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 81962 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81901 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 81840 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81779 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81718 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81657 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81596 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //