Array 1 64134-64289 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMOZ010000004.1 Brooklawnia cerclae strain DSM 19609 Ga0197548_04, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================= ================== 64134 27 100.0 41 ........................... GCGGTCGTTTCGACAGGCTCAACGAGCGTTCCGGCCGTGAC 64202 27 100.0 34 ........................... CCTGGGACAACGATCCGCTCCTGCAGCGGCGCGT 64263 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ========================================= ================== 3 27 100.0 38 ATCGGTCCCTGAGCCTGTCGAAGGGAC # Left flank : CTGGATACCTCGACGCGCTCACACCGCAGCGCGAGTTGATCTCGACCCTGGTGCGCCGCGGCATCCCCTATCTCGGCTGGTCGGCGGGAGCCATGATCGTCGGTCGCCACGCCATCGTCGGCGGATGGCGTCATCAGGGACGCCAGGTGGCCCCCGAGATCGTCGGCGAAGGCAGCACCGAGCTCGACATCCGTGACGGCCTGGCTCTCATCGGGCCGAGCATCGAGACCCACGCCGACTCGCAGTTCCTCGTGGGACGCGCCATGGCGGCGCTCAAGGTGGGCCCGATGCGGTCGGTGGTGCTCATCGACGAGGACACCGCGCTGGTGGTGGACGCGTCGTCCGGGCGCACGGCCGTGATGGGTCCCGGGCGCGTGGCATGGGTGAGCGGAGAGGCCGACGAGTTCGTCGTCCGGTTCGAGCCCCGGCACTGATGTGCCCCGGGCGGCTGAGTCCGTCGAGGACGGCCCGATCGTTTCGACAAGCTCAACGGCCGTGAC # Right flank : CGCGGTCGTTTCGACAGGCTCAACGGACGGCCCGACAAGCGCGATCCTTGCCGGTCGGCGCGCAAAAACGAGCGTTCGCCGGTGGAGTTGTTGGAGTAGTTCTGGGCGTTAGTGGCAATCTAGTGGCATGCACATCCTCGTGGTTGACGACGACCAGGCCGTCCGCGACTCGTTGGCCCGCTCACTGCAGTACGGCAGCGGCTACGAGGTCACCACCGCAGAGGATGGGCTGGAGGCGCTTGCCAAGCTGTCGTCCATGCGTCCCGACGCGGTGATCATGGACGTGATGATGCCGCGCCTGGACGGGTTGGAGACGACCCGCATGCTGCGATCCACGGGCAACGACGTGCCGATCCTGATCCTGACCGCCCGCGACGCCGTCGGCGATCGCGTGGACGGCCTCGACGCTGGGGCGGACGACTACATGGTCAAGCCGTTCGCGCTGGACGAGCTCACCGCCAGGCTGCGGGCCCTGACGCGGAGGGCGCGTCCCGACCACG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGTCCCTGAGCCTGTCGAAGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 2274522-2274729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMOZ010000001.1 Brooklawnia cerclae strain DSM 19609 Ga0197548_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 2274522 24 100.0 37 ........................ GACCGTTACGACCTGAGTGGTGACGCCATGGTCAAGG 2274583 24 100.0 38 ........................ GACCCCGGCCCACACCAAGAGGTCAGAGGAAAAAGCTA 2274645 24 100.0 37 ........................ GACGTTGGCTGTTCCAGCCGAGTCCGAGCTGGCTCGG 2274706 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 4 24 100.0 38 TCCTTTCGACAAGCTCAAGGACCC # Left flank : AACGCCCCGTTCATCGTCACGGGGCCCTGGAACCTCGCGACGATCAAGGAGTCCGGGATCGCCTACGCGATCGATCCGATCCCGCAGGCCGGCCCCTATGCGTCGTCCCCGTTCATCGGGGTGCAAGGTCTCGTGATGAGCGCCCACAGCCGCAACCCCACTGCTGTGCGGGAATTCCTGGTGGACTACGTCGCCTCGCAGGAAGGGCAGACCGCGATCTACCGGGTCGGCAACCGGGCACCCGCCAACAGCGCCGCGTTCGAGGACGCCGAGTCCGACGCCGACACCGCGGCCTTCGTCGCCGCCGGGGCAGGGGGGATCCCCGTGCCCAATTCCCCGGCCATGGACGAGGTATGGGCCGAGTGGAGCCAGGCCGAGACCCGCATCATCGACCGGAGCACCGACGACGCGGCCGGCACCTGGGACGACATGGTGTCGAGCCTGCAAGCCGAGCTCGGATAGCGCGAGCCGAGCTCCGCGAGCCCCGTGCCGCGTCCACG # Right flank : CTCAGGTAAAGCCCGCGTATACGCGCGGCGAGGGTCGGCGTAGCGTATGGGCAGAGGCGAGGAAGCCCCCCATACCCCGGCCGAGGGACACGCGTCGTTGCGCTCCCAGCGGCCATACAGACGAAGGATCCGCACAGTGGAGGACGCAGAAACCCGCATCAACCCCGGCGGCGCGGCCAGCCCGCGCCGCATCGCCCGCGCCCGCAGGGGCACCCCCTTAACATTCCCTCGATTCACCCGGTTCGCCGCCCTTGCCGCGATCGTCGCCGGGCTCTTCGGGCTCGCCGGCTGTTCGTCCGGCGGTTCGGGAGACACACCACAACACGGCGGCGGCGAGGCCAGCCTGCAGCTGCCGCCGCTCGACTCGGTGAGCTTCCTCGGCGGTGCCATCTCAGGGCACGGCCTCCTGCTCATCGGCCTGGTGGTCTGCCTGGCCGGCCTGGTGTTCGGGCTGGTCACCTACGGCCGACTCAAGAACCTGCCCGTCCACCAGTCGATGC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTTTCGACAAGCTCAAGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 2496461-2506778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMOZ010000001.1 Brooklawnia cerclae strain DSM 19609 Ga0197548_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2496461 29 100.0 32 ............................. TCGACCGTGCAGGACCAGCGCCATTCGGTGGG 2496522 29 100.0 32 ............................. GGCAAGCCACGCCCGCCGATCCAGCCGGAACC 2496583 29 100.0 32 ............................. ACGGCGACACAGATGGGGCTCACCGGCGACCA 2496644 29 100.0 32 ............................. TTGGTATTCCGTCCCTGTTCGACGGAGGTGCC 2496705 29 96.6 32 ............................T CCGAGATCGCGGATGGCCTTCTCGGCCCGCTT 2496766 29 96.6 32 ............................G AATCCTCAGGCGCAGGCGATCCGCACGAAATC 2496827 29 96.6 32 ............................T CGTCACCACTGGGCCTGACCGGCGCGTCGATC 2496888 29 96.6 32 ............................G GCAATCGGCGAGGTGTCGGTCGACGAGTCGCT 2496949 29 96.6 32 ............................T TAACAGTTGCCCGCCCGAGTGGCGGGCTTTTC 2497010 29 96.6 32 ............................G GCGATCCAGATCGCCGGACAGTCCGAGACGCT 2497071 29 100.0 32 ............................. GGCTTGGCCTCTGGCTTGCGGCTGCGAGCAAT 2497132 29 96.6 32 ............................G AGGCGATCCACGAGCACATGGCCGACGAGTAC 2497193 29 100.0 32 ............................. AAGAACTCCTTGACCTTTTGGAGGGACCCCAG 2497254 29 100.0 32 ............................. GCGTCAGGGGTGCGCGCGTCGGCCGCCGCCTG 2497315 29 96.6 32 ............................T GCACCGCATACGGGACGGTCCCGGCATCCGGA 2497376 29 96.6 32 ............................G AAGACGCTTCCCGCAGTGCTCACCGAGCGCAG 2497437 29 96.6 32 ............................T CTCGCTCTCGGCGTCCTGCGCGGGCACGCGAC 2497498 29 96.6 32 ............................G TGATGGTGTGGAGACGGTGAGCCGATCCCGAA 2497559 29 96.6 32 ............................G GACACCTTCCGGGCGCGGGCGTGGACGAAGGC 2497620 29 100.0 32 ............................. TTTCGCGGCCTGGCAGGGCTAGGCAAGGCGTG 2497681 29 96.6 32 ............................G TGTGGGGGCCGGGGCAGACAATCCCGCCCCGG 2497742 29 96.6 32 ............................G ACGTATCCGGGCTCCTCGTCGATGGTGATGAC 2497803 29 96.6 32 ............................T GGGCCGAATGCCTGCAATCCGAGGTCGCAGAG 2497864 29 96.6 32 ............................T ACCGGGCCAAGGCCGAGGCCAGGGTCACCGCG 2497925 29 96.6 32 ............................T GTCCCCACCACCGGCGACAGCCTTGTGGGTGT 2497986 29 100.0 32 ............................. GGCGTCATCCACGCCGAGCACTGGCACAAGCG 2498047 29 96.6 32 ............................T GGCGTCCTCTATCTGCCGGACGAGACGGTGTG 2498108 29 100.0 32 ............................. CGCCTTGTCGCTGGCACGGGGGCGTGGATCGA 2498169 29 100.0 32 ............................. GCGAAGCTGATCGGGTTGCCAAGGCGGGACTG 2498230 29 96.6 32 ............................G CGTCCATCTCGCGGGTCGATGGCGACGCCACT 2498291 29 100.0 32 ............................. CGCCGTACGGGAGCGCGTAGTCGTAGGAGTCC 2498352 29 96.6 32 ............................G CTGCTCGGCCGCAAGCAGGTCATAACGCCCGA 2498413 29 96.6 32 ............................G ATGGTCATCGTTTCTCCTTGGCTAGGCATTCC 2498474 29 96.6 32 ............................G TTGGCCAGGGTGACGGCCTTCGCGGCCGTGGC 2498535 29 96.6 32 ............................G GCGCAGCATGCGGTGTCCTCGATCGCAGTGTT 2498596 29 96.6 32 ............................G CAGCGGCTACCGGCGTGGTGGGACCCGAAGAC 2498657 29 96.6 32 ............................G CGCATGGTCATGGCAGTCTCCTGTGGCTTGTC 2498718 29 96.6 32 ............................T GATGAACCATCCGCCCCGTGCCGACTCCCCGC 2498779 29 100.0 32 ............................. TCGTCCTGGCCCGTCTGGTGTGGCGGGACTGC 2498840 29 96.6 32 ............................G GTGGGGGCCGCTTTCGTCTGCTCGGTGCGTCA 2498901 29 96.6 32 ............................A CGACCTGTCGGCGATGAGCGATCCAGAGTTCG 2498962 29 100.0 32 ............................. ACACCGCCAAGCACGGCGAGCGCGTCCTCCTG 2499023 29 96.6 32 ............................T CTCGGATCCACTCAACGCCAGAAGCGTGTTCC 2499084 29 96.6 32 ............................T GCAGGGGTGACCAACGGCACATCGTATGTGGG 2499145 29 100.0 32 ............................. TCCTTGCCGTTCGTGTCGCTGACCTTCGCCGT 2499206 29 100.0 32 ............................. CGACACGACGGCCGGTCAGCTGAACAACACGA 2499267 29 96.6 32 ............................G AGCGTCACCCGGCGCACCAGGGTGGACAGACG 2499328 29 96.6 32 ............................T GTGTCGTGGCCCCACCGGTAGATGCGGGCGAT 2499389 29 96.6 32 ............................T TGGTGAAAGTTCATACATTTTCGACGTGCTGT 2499450 29 96.6 32 ............................G GTATCCGGCACATCCGACCCCGAGGTCATCCG 2499511 29 96.6 32 ............................G CATTCCCGGAACTCGTTGGGCCGTTTGGCTGA 2499572 29 100.0 32 ............................. CGGAACGCACCCGTGTCTTGCGCGAAGCTTGC 2499633 29 100.0 32 ............................. CGCCACTGCGACCCGTCCCACTGCCACACCGT 2499694 29 96.6 32 ............................G TCACCCACGTCATACGGCGGCGCCGGAGTCGT 2499755 29 96.6 32 ............................G TCGATGTCGGGGCCGTTGATGACGTTGCTGAG 2499816 29 96.6 32 ............................A TGTGGGACGCCGTCTGCGGCACCCATCCTGGG 2499877 29 96.6 32 ............................G AGCCTCATCGGCCAGAACCTCGCCGAACACAC 2499938 29 100.0 32 ............................. TACTCGTACGACTCGCTCGTCCGCGCTGGCAG 2499999 29 96.6 32 ............................T TCGAGCGTTGTGGTCGCCATGAGATTAGGCCC 2500060 29 100.0 32 ............................. TGCACAAGGAGGTTAGCGACCGGGCCAGGCAG 2500121 29 100.0 32 ............................. AATCGTCAGGCAGCAACGGCAACTCCACACCC 2500182 29 96.6 32 ............................A CGTACGCTCGTCCCCGAAGACGACGCCAGCTC 2500243 29 96.6 32 ............................G GGGCGGGAGCGGTCACCGATCCGCTGGGCCGG 2500304 29 96.6 32 ............................G CACTGGACGCCGCGCAACGCGGCTGGCTGCAA 2500365 29 96.6 32 ............................G CCGACACGCCCACGCGGCTAGCACGGTCACCG 2500426 29 96.6 32 ............................T CCCCGAGCGGTCACAGAGCTAGCGGCAGACAG 2500487 29 96.6 32 ............................G CCGACCGGGGCCGCCACGCTCGCGGCCACCTC 2500548 29 100.0 32 ............................. TTCACGATCGACACGGAACGACTCCCCGCGCA 2500609 29 96.6 32 ............................T AACGCTGAGAATCTGGGCAACGAGATCATTGG 2500670 29 100.0 32 ............................. ACGTGCGGGGCGGCCTGCTTGGTCTCCAGGTC 2500731 29 96.6 32 ............................T GAGGCACGTCGACAGCGGCTGCACATCCACAC 2500792 29 100.0 32 ............................. GAGATGGCCACCGAGCCGCCTGCCGGAACCAC 2500853 29 96.6 32 ............................T GCTGCAGCAGCTGCGCCGCCGGGATCTGCGGC 2500914 29 96.6 32 ............................G CGTGCGTCCGCAGACGACGTGATCGCCGGCGC 2500975 29 100.0 32 ............................. CCGACGTGCCCCATACCCCGCACGCGCTCAAT 2501036 29 100.0 32 ............................. GGCGCATTCACCGTCCTCGTCTCAAACGGGGA 2501097 29 96.6 32 ............................G CATCGCGTCTATCGCCGCCATGTGGTCACGTC 2501158 29 100.0 32 ............................. ATCTCGGGCCGCAGGGTGGCCTCATGTATGAG 2501219 29 96.6 32 ............................T GGCCATCCCTGCCGCGCGTAGCGCATGCGTGC 2501280 29 96.6 32 ............................G CGTGCGGCGATCCCGCTGAGGGTGTCGCCGGG 2501341 29 96.6 32 ............................G CCATGCCCGCTACAACGATTTTTGACGCGGCT 2501402 29 100.0 32 ............................. TCCGGCGAGACCGTAACCGTAATACCAGAAAT 2501463 29 96.6 32 ............................G TGGGAGCTCCTAGCCGATTTGGCCGCCACGCG 2501524 29 96.6 32 ............................T TCCTCGGCCGTGCGACGCGGCAGGAGATGCTC 2501585 29 96.6 32 ............................G CCTTCATCGTTGGGGGTCCTCTCGTTGCGGGG 2501646 29 100.0 32 ............................. TACGAGCGGGTGACCGGGTTTGATCCGGCGGC 2501707 29 100.0 32 ............................. GGCTGGATCTGCCCAGGCTGGCACAGGTCCCC 2501768 29 100.0 32 ............................. GGTCGGCGACCTGTCCGAGGACCCCGCCGCCT 2501829 29 100.0 32 ............................. GATCCGGAGGAGCTTACGAATCAGGCCGAGTT 2501890 29 100.0 32 ............................. TCGGTGCCGTGGCCGCGAGACATGCCGGGTGC 2501951 29 96.6 32 ............................A CGCCGCCTACATGGCCCGCGCGCAGGCCTACT 2502012 29 96.6 32 ............................T GAGGCAAACGTCGTCACGTCGGAGGCCACTGA 2502073 29 96.6 32 ............................G TCCGTGGTCAGCTCGTAGGGCTGCGGTCTGTG 2502134 29 100.0 33 ............................. ACTCCATGCGGGAATGCGTGATTGAAATTGACG 2502196 29 100.0 32 ............................. GGGCGGACCGCACCATGCGCCTCGGTCGCCTT 2502257 29 96.6 32 ............................T GACACAGACGCTTACCCAGCTGACCGCTGACG 2502318 29 96.6 32 ............................T GGGGGCCTGCTGGCTGAGGCTCAGGAGAAGAT 2502379 29 100.0 32 ............................. CGGCACACGCGACAGGTCCGGCGGCCAATCCA 2502440 29 100.0 32 ............................. GTGTCCGAGGCCGAGGCCCGCAGGCTCCTCGC 2502501 29 100.0 32 ............................. TCGGTGCCGTGGCCGCGAGACATGCCGGGTGC 2502562 29 96.6 32 ............................T GCCCCTGTGTCTTGCGCGAAGCTCGCCATCCC 2502623 29 96.6 32 ............................G GGATTCAGGTGACGGCGTCACTGCGGTCGATC 2502684 29 96.6 32 ............................G GGATTCAGGTGACGGCGTCACTGCGGTCGATC 2502745 29 96.6 16 ............................G CTCTCTCTCTCGTAGC Deletion [2502790] 2502790 29 100.0 32 ............................. TCGGGCTCCGCGACCGGCGCACCCGCCTACGG 2502851 29 100.0 32 ............................. CGGAAGATGTCTTGCGCCGCCGACTCGTAAGT 2502912 29 96.6 32 ............................G CTCGCGGCGTGAGTCCGCGCCCGCATGTCCCA 2502973 29 96.6 32 ............................G CGATCCGGCATTTCCTCGACGACTGGAACGGG 2503034 29 100.0 32 ............................. CAGTCCGTGTCCCGCACCTCAAGGCCGAGTGC 2503095 29 100.0 32 ............................. GCGCCGGTCGGGAATGCGCCTTCGCGGGCATC 2503156 29 96.6 32 ............................T CAAGGTAGGAGCGCCCGCCGGCCGTCTGCTGG 2503217 29 100.0 32 ............................. ATCGCTACACCGCCTCAGCACGCGCCGGAACC 2503278 29 93.1 32 .......A....................G TTGGACAGGGTGATGTCCTGCACCGCGATATC 2503339 29 100.0 32 ............................. TACTCCGAGCATGAGGGTGGCTGGAGCATGAC 2503400 29 96.6 32 ............................G TTCGGGATGTCGATCGGGCTCGCGAGCAGGCC 2503461 29 96.6 32 ............................T CTCCACCCGCACACCCGAAGACCGATCCAAGA 2503522 29 96.6 32 ............................T AATTCTGCTGATATTGCGAGTGTGCATACGGA 2503583 29 100.0 32 ............................. GACTGCATAACGACTAGCCGAATCGATCCCGG 2503644 29 96.6 32 ............................T GGTGGGGTGACAACCCCGTGCACTTCGTCGGC 2503705 29 100.0 32 ............................. TCATTGATCGCGCGGTGGGCTCTGGCCTCCTT 2503766 29 96.6 32 ............................G GCCTTGGGCTGCGAGTCCGGGAGATCGGCCCC 2503827 29 100.0 32 ............................. CTGACACTCTGGGCCGGTACCGGCTCCCGCCC 2503888 29 100.0 32 ............................. CCGACCCGTCATCCACCGACACAGCGAAACTC 2503949 29 96.6 32 ............................T CGGCCTGCTCGCGGATCTGGGCGAACGCCTTC 2504010 29 100.0 32 ............................. AAGTTCGTGGTGCCGCCTGGGCCGCCGGCACG 2504071 29 96.6 32 ............................T ACGCAGGTGATGCTCACTAACTCGGGTACGGC 2504132 29 96.6 32 ............................G GACCTGTCCAGCATCGCGGCCCTCACGATGCC 2504193 29 96.6 32 ............................G CAGATGCTGCACCGCGATCAGATCATGCGACG 2504254 29 96.6 32 ............................T GGGTCTGGGCTTGTCGGGCATGATCGCGGGGT 2504315 29 96.6 32 ............................T CCACTCAACCAGACCCACCAGCACCATTACCC 2504376 29 100.0 32 ............................. ACCCTGCCACACGTCGGACGGCCAGATCTGGG 2504437 29 100.0 27 ............................. CGCTCATCAGCGGGGGGGCGTGAGTTG 2504493 29 100.0 32 ............................. AACTCGGGCTCCAGCGACACCTTCTCGCGGAT 2504554 29 96.6 32 ............................G ACGTTCTGCGTGACGCGCAGGGTCTCTCCGTC 2504615 29 96.6 32 ............................G TCACTGTCGTGTGGGACGACTCTGGCCGTCAA 2504676 29 96.6 32 ............................G ATGATCGACATAGCGGCGTCGCGCTGGGCCTG 2504737 29 100.0 32 ............................. GTATGTTCGCATTTTCTGCCCCTCCGGTAGTG 2504798 29 96.6 32 ............................G AGGACCGGCGCGGCCGTGTAGATGTCGTCCTC 2504859 29 96.6 32 ............................G GGCGGGCATCCCGTCAGGCGATCGCGGCGTGC 2504920 29 93.1 32 ................A...........T CACCCTGGCTCCTCAGCCCGTGGACCTGGAAA 2504981 29 96.6 32 ............................T CGATATGCGCCGATGAGTGATCTCTGGACGCC 2505042 29 100.0 32 ............................. AGCAGACCCGCGCAGCACCTGCATCTCGTAGG 2505103 29 96.6 32 ............................G GGCAGGACGTCGGCGCCGCGGTCCAGCAATTC 2505164 29 96.6 32 ............................G AAGAACGGCGAACCTCACGCATGGACGCTTGG 2505225 29 100.0 32 ............................. CTCGTCCCTACGACATGGGTGGACGGAAGCGA 2505286 29 100.0 32 ............................. AACAGAGAGGAGCGAGGTGGACAAGCGCGTGA 2505347 29 96.6 32 ............................G TCGCCGTTTTGAATGACGTTGACCAGCATCTA 2505408 29 96.6 32 ............................G ACGGCCGCCAGCTTGTCGAGCTTTTCGAGTTG 2505469 29 96.6 32 ............................T CCGCGGGACCTCCATCGTCGGCCACTCCTTCT 2505530 29 96.6 32 ............................T CTCCCGCCATGACGTGAGTGCGTCGCACGCGT 2505591 29 100.0 32 ............................. CAGGCTCTGGCATGACGTGACGCGTCCGGAGG 2505652 29 100.0 32 ............................. GCGGCGGAGTCGATCAGCACGTCCGAGCACAG 2505713 29 100.0 32 ............................. TTCGCCTTCAGATCAGTAGCATCCTCGCCGCT 2505774 29 100.0 33 ............................. TCTTTCAACGAGTCCCCCGAGCTTGTCAATCCC 2505836 28 96.6 32 .....-....................... CTCGGGAGCCACGGCATCGCACGCGGCCTCGA 2505896 29 96.6 32 ............................G TCGCGTTGCGTGGTCCTCGTGGATGAGGTCAT 2505957 29 96.6 32 ............................G TGCGGGTGTGGGCGTCGCCGTCCTCGGCTGGC 2506018 29 100.0 32 ............................. TGGAAACTCCGACCGGACATTGCTGCCGCGCT 2506079 29 96.6 32 ............................G AGCGGCTAGCGGAGGCATGCGCCGGCGGTGAC 2506140 29 96.6 32 ............................T GGCTCGGTCAATGCGTCCCAGGCGCGGATCGG 2506201 29 100.0 32 ............................. CCGCGAGTTCGCGACCCGGGCCGCAGCCGATG 2506262 29 100.0 32 ............................. GCGATCAGGCGGTAGGTGCCGGCGTCGTCGGT 2506323 29 96.6 32 ............................G TCGCGGTCGACACTCATGGCCGCCCCGTACTC 2506384 29 100.0 32 ............................. GCGATCAGGGCGGCGTCGACCGGGTCGATGCG 2506445 29 96.6 32 ............................G TCGATCCTGAGTTGAACGGCACCCCGCCACTG 2506506 29 96.6 32 ............................A GGTCCCGGGCGGTCAGTGCCGCTTGCCGGGGC 2506567 29 96.6 32 ............................T GATGTCCGCCTTGGATCGGGTAATCGAGGTGG 2506628 29 100.0 32 ............................. GGGGCGAGGAACAGGGCGAGTTCGGTCGGGAC 2506689 29 93.1 32 A...........................G AATCCGTGGACCTCAATCTCGTCGGGATCGGT 2506750 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 170 29 97.8 32 GTGCTCCCCGCGTAGGCGGGGATGATCCC # Left flank : GAGAAAGACGCCGTCGTCTTGACCCTTTGGGACGACAAAGTCGGTCGGGTAGCCGCAGGCGCCAACTACTCGCCCGATGATCTCGATGAGGTGGACTGGTGACAGTAATCGTGCTCACAGCCTGCCCAGTCGGGTTACGGGGCCAACTCACGCGCTGGCTGCTTGAGATCAGCCCCGGCGTATTCGTCGGGCACATCAGCAAGCGAGTCCGTGAGGCCCTCTGGGAACAGATAGGTGAGCTTGTCAAGGACGGAAAGGCTATTATGGTGAGTTCTTCGTCGTCTGAACAGCGGCTGGAGTTTCGAGTACATCGAAACGAATGGGAGCCCGTTGATATGGACGGCATCACGCTTATTCGCCGCAACAGCACGAGCGCAGTCACGTCGCACCGTGTGCGCGCGAACTGGAGTACCGCCAGTCGAATGCGGCGACGACGAACATGAGCATCAGAAGTGAAGCAGAACCAGCAGGGCTGACCGCATGATCCGTAGTCAATTAGT # Right flank : GGCCTCCCATCCCCAGCCGCTGCCAGAACAGTTCGGCTTGTCGCAACGTCGTAGACCGCCACAGCGGCTCCCTCCGGCCGGGGACCCGGGCCGGATCCCGCTTGACCGCGCGGCGGTTGCCCACGGCCGGGTCTTCCCTGGAGGGCACCGGAGCGGGTCCGGTTGCCGAGCGGTCAACTCCAGAGGGTTGACGACCGCTTCTCTTGACCTGCCGACGATCCTCCCAGACGCCTACGACACAACACGATGCCGGACTTGACCGCCCGGCTAGCGGTGTTCCTCCCGCGCCCAGCGCACCAGCAGCGGCACGTATCGTCCGGCGAACTCCTCCAGATCGCCTGCGGTGTTGTAGGCGTGCACCGAGATCCGCAGGTATCCGCGTCCGCCGAAGCTGGTGAAGGCGGCCTCGGCATCGGTCTCGGCGACGAAACGGTCGCGCAGCGCATCGGCCGAGTCGTGGTCGGTGGCCATTCCGCTGGGCAGCCGGATGAGCCGGATCG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //