Array 1 278005-276478 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNPU01000002.1 Listeria monocytogenes strain V1885 V1885_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 278004 29 100.0 34 ............................. CGAGCAATAGACTCTCGAACATCAATACCATACA 277941 29 100.0 36 ............................. AGAAGTTTGCCCCCTGCGCCTAAGAGTTTTCCTAGC 277876 29 100.0 36 ............................. CAATTTGACGAAAGAAACAATGTGAAGTGGTATTCT 277811 29 100.0 36 ............................. CCTAAAGACTTACATCCACTTGTTTTCCAGAGTTAT 277746 29 100.0 39 ............................. TTGCATTAATACTCATTTCTAAGCTTCTAAGTTCATTCA 277678 29 100.0 36 ............................. CAAAATAAATAATATTGAATAAGCTGAAATATTTTT 277613 29 100.0 36 ............................. TTGACACATCAAATGTAAATCCGCTAAACAATTCTT 277548 29 100.0 37 ............................. TCCGACACCACCCAAAAAGCCAATGCAGTGCTTCAAT 277482 29 100.0 34 ............................. GAAGTAGATGTAATAATTTTCAAAGAAGCTTTGA 277419 29 100.0 36 ............................. ACATTTTGTACGCACCACGCTTGACGGTCTGAAACT 277354 29 100.0 35 ............................. AGCTAAACAAGTTCTTGACTGCTCTTCTTAATTCC 277290 29 100.0 37 ............................. GTTATATCTTCTATTTGCGTCGTTTTTCCGTCATAAA 277224 29 100.0 35 ............................. CGAGTTAGGGTTAGCTACTCCCGTTAGTCTTTTTA 277160 29 100.0 37 ............................. ATAATTCTGTGAACAAATACTCTTTTTCCTTTAATAG 277094 29 100.0 36 ............................. ATTTTCGATGGCGGGCATGAAACGACACTAGCTTTT 277029 29 100.0 37 ............................. CAATACCCGCTGGGTTTAGACCTCTAGCAGGTAATCA 276963 29 100.0 34 ............................. GATGGAAGTATTCGTGTGAGTGTTCTGGCATACG 276900 29 100.0 36 ............................. TCAGCTCCATCAATGCTTTTTGATAGCACTTCTAAA 276835 29 100.0 38 ............................. GTACTCCATCGGCAATGATAATCACATCCGAAGTACCG 276768 29 100.0 36 ............................. GAAAATAAAAGAGATCGAAAAACTAAACGAACAAGT 276703 29 100.0 37 ............................. AACCATCTGATGGATCAATGGGGAATGGAGTTTTTAC 276637 29 100.0 36 ............................. TTGTAGTCTGCTAGGTCATCAAACGAATCAATACCA 276572 29 100.0 36 ............................. AAGTTAGTTTCAAGGTGGATCGACTTCTTGAAATGG 276507 29 93.1 0 .......................C....C | A [276482] ========== ====== ====== ====== ============================= ======================================= ================== 24 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAATGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCTGCGAAAAACAATCCCCACGCAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 295019-294274 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNPU01000002.1 Listeria monocytogenes strain V1885 V1885_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 295018 29 100.0 37 ............................. TCTAAAAATCAAAGGAGGATGTTAGAAATGAATGAAC 294952 29 100.0 35 ............................. TCTGCCGTTTTGATATCATTTTTTGCAATAACATC 294888 29 100.0 36 ............................. GAAGCCTTACTAGTTGAATTATTGCCGCCGGAAGAT 294823 29 100.0 36 ............................. ACGCCTATCTGTGCGTCTTCCCAAACCAAGTCGTGT 294758 29 100.0 36 ............................. AAAAGAGTTGATTGACCAAATCAGAAACACACTCAT 294693 29 100.0 35 ............................. AATTAACAGAAGCGGAAATTAAAGGCATGCAAAAA 294629 29 96.6 37 ................G............ TAGATAGTTTAGACTTTTCGACGTAGTACTTCCGCTA 294563 29 96.6 36 ................G............ GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT 294498 29 96.6 35 ................G............ TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC 294434 29 93.1 37 A...............G............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 294368 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [294344] 294302 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 94.8 36 GTTTTAGTTACTTATTTTGAAATGTAAAT # Left flank : GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTTTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //