Array 1 95696-97188 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGZ01000005.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F63H3 NODE_5_length_143201_cov_18.3949, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95696 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 95757 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 95818 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 95879 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 95940 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 96001 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96062 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96123 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96184 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96245 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96306 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 96367 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 96428 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 96489 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 96550 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 96611 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 96673 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 96734 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 96795 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 96856 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 96917 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 96978 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 97039 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 97100 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 97161 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113320-115284 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGZ01000005.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F63H3 NODE_5_length_143201_cov_18.3949, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113320 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 113381 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 113442 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 113503 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 113564 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 113625 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 113686 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 113748 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 113809 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 113870 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 113931 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 113992 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 114053 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 114114 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 114175 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 114236 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 114297 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 114358 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 114419 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 114480 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 114541 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 114603 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 114664 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [114706] 114706 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 114767 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 114828 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 114889 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 114950 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 115011 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 115072 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 115133 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 115194 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 115255 29 96.6 0 A............................ | A [115281] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //