Array 1 104009-104395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOOP010000005.1 Clostridium sp. NSJ-49 M31_ctg005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 104009 30 100.0 35 .............................. TTTGTCTTACGACCACCAATTTCAATTTGTCGTCC 104074 30 100.0 35 .............................. AACATATTAAGTGCTAAATTTTTATAACGGTTAAA 104139 30 100.0 34 .............................. AAAGATAAGTAAACACTATCTTCAAGTAATGTAT 104203 30 100.0 36 .............................. CCATCTCTGCCTACTCCTACCATTTATTACCAAACA 104269 30 100.0 36 .............................. TAAGTTTATTAGGTGGAGGATTAGGATCTTGAACAA 104335 30 96.7 1 ........................C..... A Deletion [104366] 104366 29 76.7 0 ......-.T...G..T.AA..........G | A [104369] ========== ====== ====== ====== ============================== ==================================== ================== 7 30 96.2 30 GATTAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATGATACTATGGAAAGACAGTCAGTTTATCTTGCAAGAGAAATTCCATTAGAAAATGGAGAGGTTTTAGATGGTAAAGATATATGGAATCAGTATATAGAGTTATTAAGAGATAATAAAATGAAATATTCAGAAAAAGAAGTGAAACTATCAGATGTTAGGGCTAAGATGAATAACTTTATATATGAGGTACAAAAAAATAACAATATAATGCCAAATGAGATTGTTGGAGATCTTTATTATCTTGAAGATGGTGAAAGTTACTTCAAAGATGGCAAGGTAGATAAAGAAAAATTAATAACTGGAATAGGGGATTTTATATAGATATTTACCAAGTGAAATTATATAGTTATGAGGGTAGATATTAGGATTTGTATAGAGTTTAGAATAAAAAAACTTAAGTTTTTAAATATTGATTGCTGCTTGGTAAAAAATTAAAGATGCTAGATATAGCAATAAGCTAAGTTGATTAAAATATATAGAAACTTTGAATTTTCTATG # Right flank : GAAAGTATATATGTATATAATAAGAATAAGTTGATAAAAATGTAGATAGAGCGTAAAATTAAGTTATAAAAAGTGTTGTGAGGTAACATTAAATGGAACGTAAAGTTTTAAAATGGTTAATAAATTGGAAGAATAGTTCTAATAGAAAGCCTTTAATTTTACAAGGGGCAAGGCAGGTTGGAAAGACGTATTCTGCATTAACCTTTGGAAAAGAGTATTATGATTCAGTAGTATATTTTAACTTTGAAAATAATAGAGAACTAATAAAAATATTTGAAAGAGATTTAGATCCTGAAAGAATAGTAAGAGAGCTTTCTATTAATGCTGGAAAAAGTATATTTAAAGAGAAAACTTTAATATTTTTTGATGAAATACAGGCATGTGAAAGAGCATTGACGTCATTAAAATATTTTAATGAAAATGCAAATGAATATCATATAATTGCTGCTGGAAGTTTACTTGGAGTTGCTGTGAATAGAGAGCAGTATTCATTTCCAGTA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 107928-108677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOOP010000005.1 Clostridium sp. NSJ-49 M31_ctg005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 107928 30 100.0 36 .............................. TATTTTTTATAAACTGATATATTTAACCCAAACATT 107994 30 100.0 36 .............................. AAAGATAGAGAGTTTATTATTGTAAGATTTTGTTGC 108060 30 100.0 35 .............................. AGACGCTATGGATTATTGCGATATTTATGGTGGTA 108125 30 100.0 34 .............................. ATCTTTTCATACAGTTTCTTCATACTTAACTCAT 108189 30 100.0 35 .............................. AGTAACGAGTATAATTATCCAAGAAAAAATTATAT 108254 30 100.0 36 .............................. TTGTTCCAACATACACATGATTTAGATAAATCTCTG 108320 30 100.0 35 .............................. TTGTTAGTTACAGAATAATCTCCAATTCTTACTCC 108385 30 100.0 35 .............................. GAGTTAATAAGGGCTTTAATAAGAAACGATAAAGA 108450 30 100.0 36 .............................. TTAATAATTCCTTCCAACGCTCCAGTATAATCACCC 108516 30 96.7 35 ...............T.............. GAAAGATTTAGCAGATAAATTACATATCACCAGAG 108581 30 100.0 36 .............................. GATTATGTTGGGGGTGGAAAGTTTTTAAGTGTAGCA 108647 30 80.0 0 .................C.AA..A.G...A | A [108663] ========== ====== ====== ====== ============================== ==================================== ================== 12 30 98.1 35 GATTAACCTTAACAAGAGTTGTATTTAAAT # Left flank : ATTAAGGAGGGAATGTAATGTCTAAAAAAGTAAATTATAATTATGCTTTTGTATTTTATGATGTAAAAGAAGAAAGAGTAAATAAAGTTTTTAAAGTATGTAAAAAATATTTATCACATTTTCAAAAATCGGTTTTTAGAGGAGAAATGACACCTTCTAAATTAATAAGATTGAAAAAAGATTTAGATAGAGTTACCGATAAAAATGAAGATTTCATATGTATAATTAAACTTCTAAATGATAATGTATTTGATGAAGAAGTATTTGGTGGAAAATCAATTGTAACAGGTGAGGATTTAATAATATAAAGTATCTAAAGAAATAATTTTACCAAGTGGAACATTATAAAAATATGTTATTAACTAGGAGTAATTCTAGCTTTACAGTAATAATTAATCACTAATGTAAAAAGTAATTAACGGTTGGTAAAAATTTTGTATAAGTAGTAGTTGTAAGCACTTAGCAGTATTGGTAAAATTATAAGTAGGTATTTTACTTTG # Right flank : ACTATGAGATAGCTTCTATAATGGCAAAGATTGAAGGTTGGAAATCATACGATAAAAATAAGACGGGAATGCTTAGATTTCCTATATACAATAAACAAAGAGCTTTTGTAAGAGTAGAAGATTACCAGGAACAAGAATATATAGCTTAAGTATGAATAATAAAAAATAAGTGAATTCATGTGCGCGTACACGCATATACACGCGTATAGGAAAAAAGGGAGCTTGTTCCACTTATTGTTCCATATTATAAGTTATAATATGGTTATTAAAGTATAGTTTTAGCTTATGATAGAATGAATCGTATAATAAGGATAATATTTTTATAGATTTTAGAAAGATAAAATAAATGAATAGATTAATAAAATCAAATAACTATTAAAATATGCAAATTAATCAGTCATAATAAATAAAAATATACCTTTATATTAAAACTATTAATATAAAGGTATATTTTTTAATTTTATTATTTTAAGTCTTAGATTATTTTTTTAAATCTCTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //