Array 1 30224-27145 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADAI01000033.1 Vibrio cholerae RC27 VIJ.Contig953, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30223 28 100.0 33 ............................ CAAAAAGCCTCTGTTATGCCTTCTGATTTTTTG 30162 28 100.0 33 ............................ CAGAGCGTCAGGTCATCCGCAGTTTTGCAAACC 30101 28 100.0 33 ............................ TGAGAATACGCCTAGCGATACAATGTACCGTAT 30040 28 100.0 33 ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 29979 28 100.0 33 ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 29918 28 100.0 33 ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 29857 28 100.0 33 ............................ CAGTTACCTGACCAGCAAACAAAGCTTCAGCAG 29796 28 100.0 33 ............................ CGCTTTGCTATAAGCGCGGCATACTTTACCCCG 29735 28 100.0 33 ............................ CCATCCTTTCAGCAAGGGTGAGAAGGCTTGCAA 29674 28 100.0 33 ............................ TGCCTATTGTGTATCGGTCCTGACCGCTTTGAT 29613 28 100.0 33 ............................ CAGGCGAAACGTCTCTCGCACGTAAATCAGGTC 29552 28 100.0 33 ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 29491 28 100.0 33 ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 29430 28 100.0 33 ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 29369 28 100.0 33 ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 29308 28 100.0 33 ............................ TCAATTTTCAGTGCAGAGTTTGCAGCCGGAATG 29247 28 100.0 33 ............................ TAAAGCTCTTTATACTCGCCTTGTCCAAACATC 29186 28 100.0 33 ............................ TAAAGCCAAGCTCTAACGCTTCTGAGGCTGTCA 29125 28 100.0 33 ............................ CAACTCACGCGCAGACTATGACGACATACACAG 29064 28 100.0 33 ............................ TTGACTTGGCCGTGAAATCACCAGAACTACCGA 29003 28 100.0 33 ............................ CAGACTCTTTTTTATCGCTAATACCAACTGGTG 28942 28 100.0 33 ............................ TCTATCACCAATAGTTTCAGTCTCTTTTACTAT 28881 28 100.0 33 ............................ TAAAAGAAGGGCTTCAGTAGATGGGCTTTCAGC 28820 28 100.0 33 ............................ CACTGTACTGTCCAACGTGCCCAGTGTAGCGGT 28759 28 100.0 33 ............................ TTGAGATAGAAAAATCAATATGACGCGCAGCAG 28698 28 100.0 33 ............................ TTGGCTGTTTGAGTGTGAGGATATACTTGTCAT 28637 28 100.0 33 ............................ TACGTTTTGGTGCAACCGATTTAAAGCTATCTT 28576 28 100.0 33 ............................ CAGAATTCACAATGTTTTTGCGCTCATCAGGCG 28515 28 100.0 33 ............................ CAACTCGCCTTTTTTCACGATGCCATCATAACT 28454 28 100.0 33 ............................ CAAGTCGCTCTTTACACTCGATGCAGTGACGCG 28393 28 100.0 33 ............................ TTCTACGCCTTGGAGCCGAAAAATTCAGAGAGC 28332 28 100.0 33 ............................ CCAAACCAAGCAAGTTTGGAAGCCTGATACACT 28271 28 100.0 33 ............................ CAAAACCAATGCTAAACTATACCAATAAACATT 28210 28 100.0 33 ............................ CACACAAAACCGTGATACACTTCACATAACGAA 28149 28 100.0 33 ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 28088 28 100.0 33 ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 28027 28 100.0 33 ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 27966 28 100.0 33 ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 27905 28 100.0 33 ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 27844 28 100.0 33 ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 27783 28 100.0 33 ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 27722 28 100.0 33 ............................ TAAAAACATTGATGCTTGCAGGATGGCTTTTCA 27661 28 100.0 33 ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 27600 28 100.0 33 ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 27539 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 27478 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 27417 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 27356 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 27295 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 27234 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [27213] 27172 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.4 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //