Array 1 177564-175372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJFR010000003.1 Pectobacterium carotovorum subsp. carotovorum strain BL-4 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 177563 28 100.0 32 ............................ AGCGTTCGAACATGATTTACCCCGTCTGACAA 177503 28 100.0 32 ............................ TATCACTCACCGAGTAACGGCGTTGCGTATGA 177443 28 100.0 32 ............................ GTAGCGACCGTTGATGCGTTCGTCGCCTTCAA 177383 28 100.0 32 ............................ GTCGCACGCAAGCCATTCAAAGGCACCGTGGC 177323 28 100.0 32 ............................ AAGCGTTGTCGCAACTGGGAACATGCGGATTG 177263 28 100.0 32 ............................ TGAAAAAATAGCAACCGGGATCGCTTACGGGG 177203 28 100.0 32 ............................ GGCACGCAGTAATTTGGCTGGCTCGCCTTTGT 177143 28 100.0 32 ............................ ATAACTTACCTCACGCGTTTTCTTTAATCGTA 177083 28 100.0 33 ............................ CTCCATCGGCTGCGCCTGGCTGTCGGGTGCCGA 177022 28 100.0 32 ............................ AGTTTGGTTCTGCAAGCCAGGTGATGACATTC 176962 28 100.0 32 ............................ GGATGCCTCGTTGCACGCTGTCAGCGATATCC 176902 28 100.0 32 ............................ CCCCTGCGCGGCTTGTTCCTCCGGCGGGATAC 176842 28 100.0 32 ............................ GGTATGGTCAAAGCGTGACGCTGCTATAGCGA 176782 28 100.0 32 ............................ CAGAAAAATTTCATTTCTTCATAGCTATCCCC 176722 28 100.0 33 ............................ TCTTCCTTGAGTGCAAACGCAGCGAGATTAAAC 176661 28 100.0 32 ............................ ACTACTGACATACTCCATGATATCGAGACGCA 176601 28 100.0 32 ............................ GTTCTGGAAATCCCGCGCGGCGAAGGCCAAAA 176541 28 100.0 32 ............................ TGGTCGTAAATTTCAGTCGTTAACGAGCAACG 176481 28 100.0 32 ............................ TAACCCAAAAGTAACCGCGTGTGACATGTCAC 176421 28 100.0 32 ............................ TAAAACGTCAGGCAAGAAACGGCTGACAACAA 176361 28 100.0 32 ............................ TGCTGGTGAACACCATTCGTTCACGCCGTGGC 176301 28 100.0 32 ............................ TGCCAGCTCCGCTTTCTGCTGATGATATTAAG 176241 28 100.0 32 ............................ GTAAACTCGCTCCATTGCCGCATCCCAGCCGT 176181 28 100.0 34 ............................ CCGCTGCGACGCCTCAGCAGCCGACACCCGCATC 176119 28 100.0 32 ............................ GGTTTTGGTGTTCACCCCGCACAAGCCCGATT 176059 28 100.0 32 ............................ AGCGGAAAGGGCAAGATGATTGACGACTGCCT 175999 28 100.0 32 ............................ AAAGACTACGCACAGGCATACAAAAGCTAAAT 175939 28 100.0 32 ............................ AGGATAGCTGGCGTCAGCCCTCAGTCGGTTAA 175879 28 100.0 32 ............................ TTTGTGAATCAGCACACCCTCATCAGTGTCTG 175819 28 100.0 32 ............................ GGGAAGCGAATCAAGCGCTGTGTTTGAAAGAA 175759 28 100.0 32 ............................ TGACCATATTCCTGACGCCACGAAAATGGTTA 175699 28 96.4 32 ...T........................ GTTATCGCATCATCCGGGTCTGTCGAGTACGT 175639 28 100.0 32 ............................ ATGTCCAATAATGTGGTGCGGGTCGTCTGAGC 175579 28 100.0 32 ............................ CGTACAACCCAGCCGGAACGCACCAGAAACCA 175519 28 100.0 32 ............................ TATTACCGCGATAGCGGACAGCGTGACACGCT 175459 28 96.4 32 ...........C................ GGCTCTGATATCGAGAATGTTTCGTCCAGCAG 175399 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================== ================== 37 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGCGTGACGGAGGTGCCGGTTCCCAGCATCACCACGCTGGTATTGGCGATGGGGATATTCCAGTACAAAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAGGCTAACTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACTCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACG # Right flank : CGACCTCAAGCGTTATTGTCTGGCTATTATCGAGGTAGCGCTGCGCCGAGTGCCCAATACGTTTACCCCTTAAATAACGCATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGAGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTTCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGAATGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 186555-187241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJFR010000003.1 Pectobacterium carotovorum subsp. carotovorum strain BL-4 NODE_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 186555 28 100.0 32 ............................ TTGTTGTCGGGGATGTATGTCTCAGTAACCAG 186615 28 100.0 32 ............................ CAGCAATCTTTGTGAGGGGTACGGTGGATGCG 186675 28 100.0 32 ............................ ACACGGCGGCGCTCGGATTCTTCCAGCGCTAA 186735 28 100.0 32 ............................ GAGAAGAACATCAGGAGCGTGGAGACGCGCCC 186795 28 100.0 32 ............................ AGCTCGTGCCATCCCGACACAACAGACGCCAG 186855 28 100.0 32 ............................ CGGATAACTTGGAGAACAATGATATGGGAAGT 186915 28 89.3 32 .......A...C.....T.......... TGCGCCCTTCCCGGCAGCGTTTTCTGCCACGC 186975 28 92.9 32 .....T.......C.............. ACTCTTTTTTGTCCGTTCTGGACAACGTATAT 187035 28 96.4 32 A........................... GCAGCAAGCGCGGCAAAATCCGAGGCCGCAAT 187095 28 92.9 32 ...........C.....T.......... AGATGCTGATACGGCAAGATGATGCGCGCGTG 187155 28 96.4 32 ...........C................ CACGTCTGCAATCTCCTCCGCAATATTCTCGC 187215 27 75.0 0 .......A....GC.......-C...TG | ========== ====== ====== ====== ============================ ================================ ================== 12 28 95.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCTGAACGGTTGCGCCGACGCTCAGTCAGCAAAGGCTGGTTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCATTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACTCCCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAAGGTTTTTCGCCAAAAAAGCCCTATTCTCTTTAACAATCTGGTGGTTAGCGTAAAACCTTAACG # Right flank : GCTTATCGGGATGCGTCGCTGGCGCGACGCATATCGTGGAGCTATTCCCCGTTGAGCGTGACAACCAGCGAGCGACTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGATGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTACCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACTTTTATCTGACGCAGTGCGGTGATCTGCGCCAGTATTTCATCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCAGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //