Array 1 514387-516489 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUIZ01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain 158913 contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 514387 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 514448 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 514509 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 514570 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 514632 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 514693 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 514754 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 514815 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 514876 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 514937 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 514998 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 515059 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 515120 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 515181 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 515242 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 515303 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 515364 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 515425 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 515486 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 515547 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 515608 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 515669 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 515730 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 515791 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 515852 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 515913 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 515974 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 516035 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 516096 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 516157 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 516218 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 516279 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 516340 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 516401 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 516462 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 534122-536103 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUIZ01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain 158913 contig02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 534122 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 534183 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 534244 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 534305 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 534366 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 534427 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 534488 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 534549 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 534610 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 534671 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 534732 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 534793 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 534854 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 534915 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 534976 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 535037 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 535098 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 535159 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 535220 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 535281 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 535342 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 535403 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 535464 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 535525 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 535586 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 535647 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 535708 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 535769 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 535830 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 535891 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 535952 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 536013 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 536074 29 100.0 0 ............................. | A [536101] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //