Array 1 16012-15568 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAS01000012.1 Lentilactobacillus parabuchneri strain FAM21809 FAM21809_scf_0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================= ================== 16011 29 96.6 32 ............................T TCAAGTAGTTGTCGATAAGCCTACTGGTATCA 15950 29 100.0 32 ............................. GTCCTTCTTGCGCATGTCATTAAGATTATCCG 15889 29 100.0 32 ............................. TCAAAACTAATTTATGGGTGGCAAACTACGGT 15828 29 100.0 32 ............................. AAAAAGACCGTTTCACCGGTCATTGAGTTTGT 15767 29 96.6 32 ...................A......... GTTATCTGATTCATTAGTTACTCTCCCTTTAG 15706 29 93.1 81 .......T..........A.......... ATCCGTTCTGACCTCTTGGCCCACTATCTCACGTATTCCCCACGATCCTACAATTGGGGCCGTGAACTTCGCAGAAACCAA 15596 29 93.1 0 ..........................A.A | ========== ====== ====== ====== ============================= ================================================================================= ================== 7 29 97.1 40 GTATTCCCCACGTATGTGGGGGTGATCCC # Left flank : GTTAAGTGGACGAGAGATGTTCACTATAATCTGCTAGAAATGAACCGAGTAACCTGGCGGGCTTTAGTTCAGTCTGCTATTCAAGAACTAGGCGGGCAGGCCACTTTAGCTCAGTTGTATGATATTTTAAAAGGATGTAAGCGCGCTGAAAGTGTTTCGGATTGGAAAGCGAAAATACGGCAAACACTCCGTGCTAGTGGATTTAAACGTGTCAAAAAAGGTACTTATACGTTAGATATTAGCTAGGTTGGGTCCTTTGAATTTGGTTGATGAGAATCTATAAGTTTCTCCATGTTCCTAATTTTTGCTGAATACTGTGTCAAACTGAGTTTAGTAGTTTGCGAAAAAGAATTCTCCTGTGATAAGGAATGGATTCCTCGTAAATTGGATAATGTATGCCAACACTTAGATGATTTCGATCAATTAAACTTAAAGCTAAAAGTCATTGAAAATGAGTGTTTTGCTATTTTCAAATGGCTTAATGGCAGCGTTTCTTTAGT # Right flank : GTTAAAGAAGTTATGACCAACGGGGATTTAGGAGAACTTGGGTTAACATCTAAGCCCAAAGCGACCACAAGTACTAGTAAACGAACTGTTAGCTCAACCAAGAAGGCATCCAAATAGGATGTTTTTTTATTATGAGGATGAATTAGCATATAAATCCAAGCTAATAGGCACTATCATTATTACGTGCTATATTATCTTCGTAGAGAGTCAATCGCTGAGTGGCGTGGAAAACCACTCATCACTCTTCCCATCGTGTTGAACAGCGGATAGCCCAATCGGCTGACTATAAATTTATTTCAATAAATTTAATTTATCCGGCGGTGAATAGCCGGAACGGTCCTTTAGGGATTCGTTAGTAGACTGATTAATGATGAAAGAGCCACTTTTCGCTGCCCACACCGAATGGTTTTTCTTCATGCTGATGCAAGGAATGGAATCTTTTCGGCTAAAATGCTGGACTTCTTTAAAATTATTGGTAAACTTCAGTTGCTTATGAAAGG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.65, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8611-8338 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAS01000013.1 Lentilactobacillus parabuchneri strain FAM21809 FAM21809_scf_0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8610 29 93.1 32 ...........G...........A..... CAATCGCCAAAATGAAAACACATCAAGTGAAA 8549 29 100.0 32 ............................. TGTGCCCACCAGCCAGCTGTGCGCCATCTGGC 8488 29 100.0 32 ............................. AAGACCTTCGTACCCCCGACAACACGTGAGTA 8427 29 93.1 32 ...........G................C TTCGGTGAGATAGTGGGCCAAGAGGTCAGCGC 8366 29 86.2 0 ...........GCA.........A..... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTATTCCCCACTGGTGTGGGGGTGATCCT # Left flank : GCCAAAGATAAAATCATTTCCTTTGGTGCTGTCAAACAAGCTCGAACAGGTAATTATACTGACTTCTATCAGCTGGTGAAAGTTGATTCTGATATCCCGGAGAAGATCACTAAGCTGACAGGTATCACCATTGATCAAGTGCGGACCGATGGAGTTGAATTAGAGAACGCATTGGATTCCCTGAAGGATTTTATTGGTGATTTACCAATCGTTGGCTATAATTTGCGCTTTGATCAAGCATTTCTTTCCGCCGGGTTTCGAAAAATTCAGCAAACAGATTTAGAAAATCGGATGATCGATTTAATGCCAATTGTCAAAAAGGCTGACCAATTCCTGGATAACTATCGGTTGGGAACAGTATTGGAAAAGTATGGTGTTGACAATGCTGCGCCACATAATTCATTATCTGATGCCAAAGCAACACTTGGATTAGCAAATAAACTAATGAAAAACGGCCATTTGGAAATTTAAGAATGCCGTCATAGCAGGGATTGTTTAGT # Right flank : GGATATTATGGCCGCTACTCGTGAAGATGTGCGTATTCCCCCAATGGAACGGTTGATTTCACGGGTTAGTAGTATTCCTTACACATTAGGAATAACCCTTAAAAGTAGAACTCATTCATGTTAGATCATGACAGGGTTAATAGCCAAAAATTGAACCTACAAAAATAGCACCTAACCAGCCGTTTTTCACGAACTAGTTGGGTGCTATTAGTATTTGCTTATTCATCAACTAATTTCTCAGAACCGATAAATTTCTTGTAAAATATAATGTGCAACCAGATGCTAACGATAATTATCTAACAGCTTAAATTTATGCTGGCTTTGGAAGTATGCACCAACCTTCAGTAACAACTTATCATTACCCTTAGCTGCCTCAAATTGAATTCCCAGAGGCATTTTTTGCTTGCTAACGTATGTTGGTAAGCTAATTGCGGGCTCTCCTGAAAGGTTGGCAAGCTGAGTGAATGGTGTCTTGGTCAATCCATGAAGCCAAGCATCGT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACTGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20310-20099 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAS01000013.1 Lentilactobacillus parabuchneri strain FAM21809 FAM21809_scf_0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20309 29 96.6 32 ............................T ATCGATAACACCATAGGCAATCGCAACTGTGG 20248 29 100.0 32 ............................. GTCTTCAGCAGTTAGGAAGCTGTCGCCGTTTT 20187 29 100.0 32 ............................. GGAAGCTCGAGTTTATCGGCTTCCGTTTTCAG 20126 28 79.3 0 .......T.....A....A...C-.G... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTATTCCCCACGTGTGTAGGGGTGATCCC # Left flank : ATGATTTAATTAGTCACGGTGTTGATGCAGACTTGTATGAGCTTCAGGGTGCTGAGCATATGGACGAATTGTTTATGCAACCAGAAATCACTAAATTAATAATTGATTTTTTGACTACACACTTTGGGAATGGTGCGTAGATTCTAGAACTTTTTCGAAATCAAGGAAATGGTCTTTAACTAAAATTATTTTTCAATGAAAGCGAACTTCTGAAACAATTTATAAAGAAGTTCGCTGTTTTATTTTGGATATTTGTTAACTGAAGTAAAAACCTTGTGCTGAGGAAAATGAGGGGGAGCTAAAGTAAATGTTGAGATGTCGGCCGAATGTTAGTAATATTAGTTTGTGCGGTGACGTGGATCAGGGATCGAAAATAGGCTATTCATACCTTATGGGTGATGCAAGTGGTCTTTTGTAGTTGGCAAAACTTTATTTGAATAGAACTAATGAAATTTGACTGTTTTCCACTTTAAGAATGGCTATAACAAGGATTTTTTAGT # Right flank : CTTCAATAATCAGTGATCAAGCTGCTAAGATTAAACAAGATACTGAGTTCCACTTGGGACTTAATTTGGCCATAGTTTTAGGCCAGTTAAAATCGAACGAATAATCATAACCGTACACGCATTTTTAGTTAGGGGGTATCAATTAAATATGGCTCATACAAAACCAAACTTAATTACAGCAAAACAGATCGACACTTTTATTAATTCAAATGCAAGCAATGTGGGACAATTGGATGATAATACGCCTTTAAAGAAATTGCCTAAAAGCTTTAAGCCTTTAAAGAAATTAAAAAATCAGGTAGCGTCTCAGGCAATTATCCAAAATTTGTTAAAGGAACAGTATTTTTGGAGTACCCAAACAACAATTTTAGAGCCAGTGTCCACCTATTTGAACACTTTGGTTGATAGTCAAAATAAAGCAGTCTTAAAACAGTTAACCTCACAAGATATCAAGCTAATTAATTTGTATCAAATCATTAATCAACTACAAACTAATGGTG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTAGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 48473-47894 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAS01000013.1 Lentilactobacillus parabuchneri strain FAM21809 FAM21809_scf_0013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48472 29 100.0 32 ............................. CAAAGCGGCGTGACTTGCGTAGCCCTCACCGT 48411 29 96.6 32 ............................C CAGCTAATGCACCACCAAGTGCGCCACCGCCA 48350 29 100.0 33 ............................. AATTTGACCAACGCGCCGTTTTTGATAACTAAA 48288 29 96.6 32 ............T................ GAGGTCGTACCTCGTAAAACAAACGTGAAAGG 48227 29 100.0 32 ............................. TTAGGCTTGCTCTCGGTATCAACAGAACTAAC 48166 29 100.0 32 ............................. TATACCTATTCATTAACGGCTAAGGAATGGCA 48105 29 100.0 32 ............................. CTGGGGATATGACCAAGAAGCAAGCCAATTCT 48044 29 100.0 32 ............................. CCGTATTCGGTAATCATTCAGGTGATTTAGAG 47983 29 96.6 32 ..............C.............. TTAGTGAAGCTGTTTGAGTTGGCATTTTCTCT 47922 29 86.2 0 ....................A..G..TT. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.6 32 GTATTCCCCACGCATGTGGGGGTAATCCT # Left flank : ACAGTAGTTTGAGCAGGACACTTAAATCATATTCACGTGGCCGGCCAAAGATATAGGGCTCTTTAATGGCTAAGTCTTCAACGACATAATTGATAAAACGGGCCGGATGGTTTTCCTTGGACTCCCAATCAGTTGCGATACTCAAAACGGTTTGGTTTATGTTATAATTATTTTGCATATTGGAACGTCCTTTCGAGGATGATTTCGTAGTCATCGGGGTTCGGCCGATGACTTTTTTTATTTTAGATTATAACAAAAGCGATTCATCGAAAGAAACATTTTTCTTCGATGAATCGCTTATTTTTTGGGACTTATGTCACAGCCCCTTCAGTTCATATTTGTACGGACCGCGTTTTTGTATTTGTGTTGTGGCATTTATGAATTCGTTTATAGTAAACTGTTAGTAGGATCGTTAGATAAAGGGGTAGAGTAAAATACGAACTAATGAAAAATGGTCATTTTATAATTTGAGAATGGCTATGTTTCGGGGTTTGTTTAGT # Right flank : GCCCTCATAAGCTGGTAGCAGGCTATTCGCGTGAAGATCCATTACTGATCAATAAAAAGAATCGTGATCTCAGGATAATTTGCTTCTCCTTCGAATCACGATTTTTTGTAAGTATTGAACTGGATTTATCCTTCAGCGTCATGAATCGCATCGGAAATATTATCAGCCGAAAAATCATGATTCATGTATGCGTCATTGCTAATCGGCAAATGCTGTTCCAGCGTATCAAACAACTGATAGGAAACGGTGCCTTTGTCTAAATGAAATGCCAACACATGGCCGCCAAACTTATGATCATCTGATAAAAAGTGGTGGTGGAAACCCGCGACCGCAGCCCCGTCAAATAATTCCGGAGAATAGTAGCTAATCATTGTTCCATTGACCTGATCACGGGTAAAGATGCTTTGATTACGAGCGGTTTCGGCTAGTGTCTGAAAAGGTGGCACGGATTTCTTAACCGCCCGAGTTTTTATTCCGGAGAAAGTGCCAGTAATTTTGAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //