Array 1 64903-64081 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEUD01000002.1 Escherichia coli strain E80 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64902 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 64841 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 64780 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 64719 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 64658 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 64597 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 64536 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 64475 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 64414 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 64353 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 64292 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 64231 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 64170 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 64109 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82202-80404 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEUD01000002.1 Escherichia coli strain E80 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82201 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 82140 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 82079 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 82018 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 81957 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 81896 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 81835 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 81774 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 81713 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 81652 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 81591 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 81530 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 81469 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 81408 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 81347 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 81286 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 81225 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 81164 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 81103 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 81042 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 80981 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 80920 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 80859 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 80798 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 80737 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 80676 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 80615 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 80554 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 80493 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 80432 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //