Array 1 9-297 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VADY01000087.1 Campylobacter coli strain MON347 1011500087, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
         9	    29	 100.0	    37	.............................	ACTTGTTTTAATTGCCTTATTTTTAATTTGATTTTAT	
        75	    29	 100.0	    36	.............................	TAACAAATTGGAATTTGTAGCAACATGACATTTTAT 	
       140	    29	 100.0	    36	.............................	ATTGCTCTCACTATCAATATTTATTTGATATTTTAC 	
       205	    29	  93.1	    36	...............T....A........	ATAGCAAAATCACATATAGTAGTTATTAAATTTTAT 	
       270	    28	  75.9	     0	...............T..-.TA..TT.T.	|                                    	
==========	======	======	======	=============================	=====================================	==================
         5	    29	  93.8	    36	CATACAAACATTTAACAAGAGGCTAAAAC	                                     	       

# Left flank :   TATTTTATC
# Right flank :  CCTCCTGCCATCATTTTTTTAAATAAAAATTTTCCTTAATATGCTTTCATCAGAGCCTTTTAAAAAATAATAAATTTTCTTTCTATAGCTTGACTCATCTTTTTTCCAATTGTTTAATGTTGCTAAAGGAATTTTTGTAATGTCAGCAATTCTTGAATCATGCAAGCCTATATTATCATAGCTAATGGCATCGGAGAATATTTTTTTTAATTCTTCTTCATTTGTATTTTTTAAAAAAAGATATAGCTTAATTCTCCAATTATTCTCTTTTTGCTTCCATTCTCTGATGGTAAAATAAGGAATATTAGTAATTTGTGAAATTTTTACATCATTGTTCATCAGGCTTAAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGATGATCAAAATGATTTAAAGCCTGCATATTACTAACTCTAAGAAGTCTTATTTTCCCATCTTTTTTATAAAACACTTTAAAAACTTCATCACTTTGTTTGTGTTTTACCATA

# Questionable array : NO	 Score: 2.77
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CATACAAACATTTAACAAGAGGCTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.97%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [13.3-83.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.41,0.27   Confidence: LOW] 

# Array family : NA
//


Array 1 11565-11732 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VADY01000097.1 Campylobacter coli strain MON347 1011500097, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     11565	    36	 100.0	    30	....................................	GCAAAGATAGTAAGATCTGGATTGATCTGA	
     11631	    36	 100.0	    30	....................................	TCAAATTTTAACTCCCAATTTATAAAAGAG	
     11697	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         3	    36	 100.0	    30	ATTTTATCATACAAACATTTAACAAGAGGCTAAAAC	                              	       

# Left flank :   TAGTGAGAGTAGATTTGTTTGTAGATAAAAAAAGCAAATTTCATGCAGTACCTATTTACAAAGCAGATTTTTCCACAAAACAACTTCCAAATAAAACTCCTGCTGCCATATCAAACGGAAAAATTAAAGAAGGGGTTGAAATGAATGAAAATTATAATTTTTATATATCATTATATAAAAATACCCCAATTAGCGTGAAAATCAAAGGCATGGAAGAGCCTATCATTTGCTATTATCACGGTTTTAATATTTCAGGAAGTCAAATAATCTACAAAAAGCACGACAATAATTATTATAATCTTAGCAAAGATGAAATGGCTATTTTTAGAAAAGGGGATAAAGAAGCTATAGCTATAGGAAGAATGCTTGAAATTAAAAAATACAACATAAGTCCTTCAGGTGAATTAATTTTGATTGAAAATGAAGAGCGTAAATGGTTTTAGATATTTTGTGAAAAAATAATAAAAAACATTGATAAAATAGGCTTTTAAAATAAGTCT
# Right flank :  A

# Questionable array : NO	 Score: 2.67
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTTTATCATACAAACATTTAACAAGAGGCTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [83.3-1.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.27,0   Confidence: MEDIUM] 

# Array family : NA
//