Array 1 53638-54140 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAIFO010000002.1 Streptococcus pyogenes strain K49285, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     53638	    36	  91.7	    30	A.....TT............................	CTTGATGTCGCAGAAATCAATATCAGACGC	AC [53643]
     53706	    36	 100.0	    30	....................................	ATGCGACAGATATTACTTTGTTGCAATCTG	
     53772	    36	 100.0	    30	....................................	TTTACGTGCTGAGTTTACTCGTAGTAATCA	
     53838	    36	 100.0	    30	....................................	ATGCGACAGATATTACTTTGTTGCAATCTG	
     53904	    36	 100.0	    30	....................................	ACTATCAGGCAAACCTTATCCAATTCATGA	
     53970	    36	  97.2	    30	.......T............................	AATAGAGCTAGACAAAAAATTGAGTTTGAC	
     54036	    36	 100.0	    30	....................................	AACATATTAACGTCCTTTCTCCTGCTTTCC	
     54102	    36	  97.2	     0	................................C...	|                             	T,TT [54131,54135]
==========	======	======	======	====================================	==============================	==================
         8	    36	  98.3	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AAGTCGTTTTTCTTGGCCTCCTTTACCCAACCCTTAAGACTTTCACACAAAGGTTACAAACCAAACGTTTCTGGCTCCTTCAAAAACCTTTAATACTAGCAGCTTTGTTTCCTCTTATGATTGGTCTAATGGCTAGTTTCATTGGGTTTGAACATTTTTTTACTCTTTTTCATCAGGTGCTTTTTGTAGGAGATAGCAGCTGGCTTTTTGATCCCTTGAAAGATCCTGTGATTTGGATCCTTCCAGAAGTCTTTTTCTTGCACTGTTTCCTTTTCTTTATGATAGTTTACGAAATCATCCTATGGAGCTTAGTAGGTTTAGCAAGATGGCAGCGCCTAAATGTAGAATGATAAAAGGATTAAGAGATTAATTTCCCTAAAAATGATAAAACAAGCGTTTTGAAAGCGCTTGTTTTTTAGTTTGCAGTCAGAGTAGAATAGAAGTATCAAAAAAAGCACCGACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTT
# Right flank :  CATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTGTAATAGGTAAAAGAAGAGTAGTGTGATGGAACAAACATTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGGGGTTAGTTGGAGAGATTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGACCTTGGTGACAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTGGTGATGATGGAGGTATTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGCTAGGC

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:62.16%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.41   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
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