Array 1 69020-69985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIUC010000002.1 Tyzzerella nexilis strain MSK.23.83 NODE_2_length_456700_cov_359.972, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 69020 32 100.0 34 ................................ TACCCTCTACAAGAAAGATATGCAATTATTTATT 69086 32 100.0 35 ................................ TCACATGGACGAAGCAGAAAATGATAGTTGGATTC 69153 32 100.0 37 ................................ TAATAACAATACGAATATCGACTACGTGCCATATAAA 69222 32 100.0 34 ................................ AAAGCGAATCCTTCGTTGATGTCTGCTCTTGTTG 69288 32 100.0 35 ................................ TAAAAAAAGTGCCCAAGGTTTGCAGACCTTTTTCG 69355 32 100.0 35 ................................ TGCTCGTTTTCGATTTTTGCATCAAATTCCATCCA 69422 32 100.0 34 ................................ TTCTGAAACATGAAACTCACCTTTTTGTGATTTG 69488 32 100.0 34 ................................ GGGTTTAAAGAGAGTCAGGTCGATGTAGATGCAT 69554 32 100.0 36 ................................ TCATCATCTAGTCTTCTGTCCCAGTCCTCTGCAATC 69622 32 100.0 34 ................................ CGACCTTTATGAATCTGATTACAAATAAGTGTCC 69688 32 100.0 33 ................................ TCAAGTGCACAACTTTTTGGACTGGAAATTAAA 69753 32 100.0 37 ................................ CATATACAAATGCTCCTGCCACAAGTGCTGTGCCTGC 69822 32 100.0 35 ................................ CGGCATGGATTACTGTGGAGATGGTACAAGCTGCC 69889 32 100.0 33 ................................ GTACACCTCGCTCTACTTTTAATGTCCAGCATA 69954 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 100.0 35 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : CCGGTGTTTCTTTGGAAATGAGGCGAAAATGGAATGTTAGTGTTGATTACATATGATGTGAATACAGAAACAGTGGCAGGAAAAAGAAGATTGCGCCAGGTAGCAAAGCAGTGTGTAAATTATGGAAGAAGAGTACAAAATTCTGTATTTGAGTGTATTTTAGATAATGCGCAATGTGTTATGCTCAAGGCAAAGCTGACAGATATCATTGATGAAGAGATTGATAGTCTGAGATTTTATTACCTGGGAAACCAATATAAAACGAAAGTAGAACATGTTGGCGTAGACAGAGGTGTTGCTGCTGATGGAATTCTTATCATGTAACAGGAGTGCGAATGGCAAGTATACATAAAAATGCAGGGGGATTCGCACCAGAAAAATGTACAAAAAGTAGCTAAGAAAGTGAGAATTAGGAACAAATGATAAGAAAAAAAGAATGATATTGATAAAATTTGGGAATATTTAACGTAATACAAGGCCTAAAATTGGGGAAAATTGCT # Right flank : TTGCGTGTTGTGCTGCTTTCTGTTCTGCGGATTCAGGTCGGAGATATGTTGGATGAATGTGTGGAGCGCTTTCCATTTTAAATAATTGGTGATTTGAACGAAAAATATTGTAGCGGATGGAGTACGATTCAAATTGCACTAGCTATCTATCGATCAATCTGCTACAATCAGCTTATAGTGCGAGCTGAGAAATCAGCATAGCTGATTGTATATAGTAGAAAAATCCTGTCGGGTAAGGTCTAGCCAACCGCATGTACCGAGCCCTTGGAGGCAAAGCGGTAACGTTAGATTTCAGCGTAGGACAGGGAGCGACAGAGCCGAAGCGAAAATGAAGTGATCTGGGAAATGATTGTGAGGTCAGAAATGATAGATATGCTTATTAGTACAAGCAACGACAAGTTATTTTATAAAATTTTGTCCGTACAAAACAGTGTGGACAACAATATGGATTGTCAATGGAATTATACAAAGCATATTAAAAAGGGGTATTGAGCCGTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 184173-185211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIUC010000002.1 Tyzzerella nexilis strain MSK.23.83 NODE_2_length_456700_cov_359.972, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 184173 33 100.0 35 ................................. CTGTATCCGTTGCAACATTTGTATGATAAACTCTT 184241 33 100.0 34 ................................. AAAGCGAATCCTTCGTTGATGTCTGCTCTTGTTG 184308 33 100.0 33 ................................. ATATTTGATCTCCTTGTAAATTATCCTTGCTCC 184374 33 100.0 36 ................................. GAGATGAATGGACACAAAATAGGACAGTGGCTTGTA 184443 33 100.0 34 ................................. TTGATTGTGGGCGCTCATTCGCCAACTCTACTTG 184510 33 100.0 34 ................................. TTGGAATCGCGTTGTAAAAGCTCTATCTAGCAAC 184577 33 100.0 34 ................................. GTAGTACTTAGGTATAAAACCCTGTGCTTAAATA 184644 33 100.0 33 ................................. ACGCTTCGTCTCGTCCGCTCTCCCCAGACGGTC 184710 33 100.0 33 ................................. TTCCCAATAAGAATGAATGGCATCTTCATGCTC 184776 33 100.0 33 ................................. TTGATAATCCGGATTTGTTGGAGGTGGAGTGAT 184842 33 100.0 34 ................................. TTCTATCAGTTACAATATACGTCTCAGAAATATT 184909 33 100.0 33 ................................. TGACAGTCTTTCCACTAAGCACATCGTCAAAAT 184975 33 100.0 36 ................................. AAACACAATATCATCACAAATCCTGTCTATAGTAAT 185044 33 100.0 35 ................................. CTTTGTAGTCAGAGCTCCTGATGCCGCCAAAACCT 185112 33 97.0 34 ...........G..................... GTAGGTGTCGCTCCACTTGTAAACCAAAACGGAT 185179 32 84.8 0 ....................A.-.TG..T.... | T [185198] ========== ====== ====== ====== ================================= ==================================== ================== 16 33 98.9 34 GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Left flank : CAAGAGATCTGAAGTATCTGTGTGAGAATGGGTATGAGCTGAAGAGAGTCAGGGCGGTGGATATGTTTGCGAATACGGTACACGTCGAGACTTGTGTGTTGCTACAACGAAGAGCTATGTAGAAATCCTTAATTTTAGGCACTTTGCGAAGCATTTCGTGTTTTCACCAGAGGGGAAAAATAGTCGCGATAAACACCTCAAAAACTATTTTGATGTTTCGGTGGTTGTTGATATAGGGTGTGGGAACACAACAAATTAAATACTAATTTCAGGGATACTTGTTAAATATCCTACAGAATTTAATTGTCGAAAATATAGAGAGAATATTAAGTGCGAATGTCTAGTAAACATAGATTTTCTATGGGATTCGCACCAAAAAATAGTTCATATTTAGGTTGAATATGAAATTGATAGTGTGATAGACTTGTAATTATAGAGAAAAATTAGTAGAATTAGCAGAAAGTTGAACGATTGTAACAGAAAAATTAGTCAACATTGCT # Right flank : TATTTGAAGATATATAGAGACAGTCTGTCAGACGAAACGGAGATCAAAGACGTAGAAGAATTGTTAAAGTATTATATCAATAATAGAGAAGGTCTGATAGCGTATCAGTCACAAGGATTAAACTTACCGGAACATCCGGATGGATTGGAATACAGAAACATGGGAACTATGGAAAACCACATCTGGAGCGTGATTGCAAAACGAATGAAGCACAGTCATACCTGCTGGAGTAAACGGGAAAATCATCTGGCAAAGATTCTTGCAAAGAAATGCGGTGGAAAGTTATACGAAGTAACAGAAAAGTCAAAGCATGCCATATTCAAGGAAGAGACCGTGGAAGAAATTCTGATGGCAGAGGAAGTGGCTAAAAAAGTAGGAAAAGGATACGAATACCCTACCATAGGTCACATGGTAGGATTAGAGGGTAAAATAATAGGTGAACGCAAGAAACTGTTTGCAATGTCAGGATTTTAGTAAACAACTGTCAGAGAGAATGATAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 193721-197058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIUC010000002.1 Tyzzerella nexilis strain MSK.23.83 NODE_2_length_456700_cov_359.972, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 193721 32 100.0 33 ................................ GACAAGTTGTACAAACGTCGGAGACGGCATCTA 193786 32 100.0 34 ................................ TCCATTGTAAAAGCTATAAAACTGTTCATGAAAG 193852 32 100.0 35 ................................ ATAATCTCTTGTAAATCACTTTGTGATATGTTTTC 193919 32 100.0 33 ................................ TTTAGGCTTATTAAACTGCTGTAATTTGTCGAT 193984 32 100.0 33 ................................ TCAAAAGAATAAGCGTAGAGACGCTAGGAAATT 194049 32 100.0 33 ................................ CACTTTTAACGTACAACACACACATACTACTAC 194114 32 100.0 33 ................................ TCCATATCTGCATTTGTTGTAGATTAACATTTG 194179 32 100.0 35 ................................ CTGGTCTCGACAGAATGTAATCTTATGCAAGTTAC 194246 32 100.0 34 ................................ CAACTATGCGGTATTGGTTAATAATCCGCACTTA 194312 32 100.0 34 ................................ AAGCGAGATGTACGCAAGGAATACGGGGTAAAAC 194378 32 100.0 34 ................................ TTTTAAAAACCTCATGTGAAATCTACGATTAAAT 194444 32 100.0 34 ................................ AATCTGACACCACTCATTTGACTTTTCGATTGTC 194510 32 100.0 33 ................................ TTGGTAAAGCGTAATATCCCATCCGAAATCTCC 194575 32 100.0 34 ................................ ATCATGCAATCACTTCTTGTTTCTGAAGAACCGT 194641 32 100.0 35 ................................ GATTAGATGATGTTATTCTATTTGTAGAAAGAAGG 194708 32 100.0 36 ................................ TAAAGTCGGTCTTGGTAGCATTTGGAGTAGTACAAA 194776 32 100.0 34 ................................ AATTCGATAATTTCACCGTAAAGCTGCATAAATC 194842 32 100.0 37 ................................ TTGTGACGTACACCAAGCAAATGCTTGCAGAATCAGG 194911 32 100.0 33 ................................ TTGCGCACCTGATGTGCTAGTATCTCATTTTCC 194976 32 100.0 35 ................................ ACCTCTCTAATATCTATGTGTTGCTGTTTGTACTT 195043 32 100.0 35 ................................ ATCTGCGTGTTTATTATATTTGTAAGGGCAGGGAC 195110 32 100.0 34 ................................ TAACGTAAACGCCTTATTTTGCGAGCTTTGTACT 195176 32 100.0 32 ................................ TTTACAGCAATTCGATTCTCGTACATCATCAG 195240 32 100.0 33 ................................ TCCTATCTCGGAGATGGCTCCTATGGCATTTTC 195305 32 100.0 33 ................................ GAAAAATAATAAACATCAAGATTATTTTTAGAC 195370 32 100.0 34 ................................ TCGACAGTGGGCTACCCGTCTTATGTTAGAGGAG 195436 32 100.0 34 ................................ GTGATTGTGATGTGACATAAAACTACAAATAATA 195502 32 100.0 36 ................................ TGCTTTTTCTTCCCACGCTTTTAACCTCTTGTCTGT 195570 32 100.0 35 ................................ TTTTAACAGTCTCGGTACATCCTTAAACTCCTTTT 195637 32 100.0 35 ................................ ATTATAGCGGTCAAGAGCAAGGCTTGCTTTCGCTT 195704 32 100.0 33 ................................ AATCTGCTGTCACTCTTAATGTCCGGTCTGTAC 195769 32 100.0 33 ................................ TAGTGGTCTGAATGCAGCAAAGTCGGTTGTGTC 195834 32 96.9 35 ....T........................... GCTCAATTCAAACAATGATCCTACAAGCTCACCCA 195901 32 100.0 34 ................................ CTCTGTATCAAATTCTAAAACAATATAATTATTT 195967 32 100.0 33 ................................ ATTGAAAGAATAGCTCCTGGGGTATTCAGGAGA 196032 32 100.0 34 ................................ TTATTCGGTTTTGTTACAAATCCGTCTAAAATAA 196098 32 100.0 37 ................................ AATTATTTTAAATTTCGGTGTTGACAATTCAATTTAA 196167 32 100.0 35 ................................ AAGGTTGGTTGTATTGGTACAAAGAACAGACAGGA 196234 32 100.0 35 ................................ TACTTAAAAAGGCGAGGTGTTTTACCCCGCCTAAA 196301 32 100.0 34 ................................ TTCCATGTTGCATCATAAATAGGGCAGTCACTGT 196367 32 100.0 33 ................................ TTCCGATGACCCTACTAAAGGTGGTAAATTACT 196432 32 100.0 34 ................................ GATTAAACCAGCTTTTAGGAGATCGTCTCGCACC 196498 32 100.0 33 ................................ TTTTTCCACGAAACCGCCAAGCTCACCCGCTTT 196563 32 100.0 33 ................................ ACAGAATTAACTTGCTGTGTTATATCGATTGTG 196628 32 100.0 34 ................................ AACATTTAGCCGTTTTATTTCCACAATATATAGC 196694 32 100.0 35 ................................ TTTGTATCTACGCTTGTTTTAAAAACACTGTTCTT 196761 32 100.0 36 ................................ TTAGATATGTAGAAGAGGACAAAGCAGAGGAGCTTA 196829 32 100.0 34 ................................ GTTATCGCAGATGGATCCATCCGATCGGGAAAGA 196895 32 100.0 34 ................................ TCCAGCTAAAAAACCGAGCATTGTGAGTATTATC 196961 32 100.0 34 ................................ GAGCTTGGTATTTTGGAGACAGACGGAAAACTGG 197027 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 51 32 99.9 34 GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Left flank : CAGGAGAAAGATGAAACAGATGCAGGCATATCTTCAGGAAGTTTTAAAGAGACAATATAGTACAGAAGGATTTAAGGATATACTTAGAAAAATAAATACAGGATTATCTTGTGTGTTAAAGTGTGATAATGTGATTTTACTAGGTGGTTATAAAGGATTACTTCATTCGATATTATTGGATGCGAAGCAAGAAGAGTATTCTAACGGAATATACATAGACAATGAGAAAAATTTGCCACATGGGATTGTTTGCCTGACATATAAGAGATAATACGGAGGGTTCTGTAAGAATAGAAAAATGTAGTGAAAATATACACAGAAAATGTTGAGTGCGAATACCTGGTAAACAGAAATTTCCTGGGGGATTCGCACCGAAAAACATGTCGTATTTGGGTTGAATATGAAATTGATTGTGTGATAGTCTTGTAATGTTGGGAAAAAATTAGTATAATTAACAAAAGATTGACTGATTATAAAAGAAAAAATTAGTCAATGTTGCA # Right flank : TCACGAGAAACTTTGTGGGAATGAGTGGGGAGTGTGGTAACACAAACAATTAAATATTGAATTTGAGGGGGACTTGGAAAAAAGTATCCCTTTTCAACGTAAGGCGTTCAGAAATGAGCGTCTATTTTTTACCCAAAATGAAATGAGCATTAAATTTATGAAAAAAATATTGAAACGATTGTGTACGGGGGGCTTTGCCTTTTGCGGCTGTATTTACTGATTTGTCGGCTATACCCGTTTTTGTGGAACACAAGTAATACTGTACTGGACGAAGTCAGAAGAGCGTGTCGGTATCGTTGAAAAAGTGATGAATGACGGTTCAATTGGTTCTACCTTTAATGAGGGATACATAAGCCGAGGGTGAAACTGCCTGTTGTATTGACATGAATACCGCCTTTCAGAACGGCTGCAAGACCAAAGCCGACGCAAGCGCACGTAAGAGTGGCGCAAAGCAGCCGGCTAAAAATGTCAAGGTACTCGTTATTTTGCGTTCAAGAATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //