Array 1 200-1020 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVE01000025.1 Streptomyces goshikiensis strain JCM 4640 sequence25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 200 29 100.0 32 ............................. GAGACGGCGGCCGGGGCGCCGGGGCGTGCGCC 261 29 100.0 32 ............................. CAGGAGCTTCGCGCCCAGGTGGCTGAACTCCT 322 29 100.0 32 ............................. AGGTCCTACGTCCGGCCGCACCGGCGCCGGAC 383 29 100.0 33 ............................. CTGTACCGCGGGGCCGGCACCGAGGAGCTGAAG 445 29 93.1 32 ........................CT... TCGGTCGGTGATTTCTCCAGCCTGCCCAACCC 506 29 93.1 32 ........................CT... AGTCGAATCCGACAATGTCCGCGCCGGAGAAG 567 29 93.1 32 ........................CT... CAGCCCGGCCCGGCCGGACTCGCCGCGATCGA 628 29 93.1 32 ........................CT... CGCACCGCCGAGCTGTCCCGCCGCAACGACTT 689 29 100.0 32 ............................. CTCTCGCTGTGCGTAACCATGCGTCGGACTGT 750 29 93.1 32 ........T...............G.... GCCTCGCCTTCCATCGCGGGCTCGGCGAAGCG 811 29 100.0 32 ............................. GGGAGCGTCAGCAGCGACTGGTCGCACGTCAG 872 28 93.1 32 ..........-T................. GAGATGCTGCAGAACGGGCTGGACGAGGACCC 932 28 93.1 33 .........A.......-........... GTGTCGCCCATCCCGGAGCCCCAGAGGGACCAG 993 28 93.1 0 .C......................-.... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.1 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : AGTGAGCAAGGCCTGAAAATCATCTTCCCGCTGGTAAGCCGCAAGGAGCGGCACGTCATAGCGGCCGCCCTGCCTCTGGCCAACTGACCGCCCAGGACAGGACGGGAGCGCAGGCAGATCCGATTGATACCCTATGTCGGAATTTCGGGAAGTGGTTCAAAGTGAGCTGGATCCCGTAGAAACTCGCAGGTCACGAAGAC # Right flank : CACCCCGTTACCCAATGGGGGGCGAAGCTGGCGGATCGCTACCCCTGACCCGGTCCGGCGAGACCTCGAAAAAGACCGCGGCCGCCAGCTTCTCGCCATCCTGCGCACCGACGCCGATGCCGGCCGGCCGCTGCCCATCGACAGCGAGCTCGCCCAGGCCGTCGCCGTCCTCGCCCGGGGCCAGCAAGACGCCGTCTGGGATCGCAACCAGGTCGGCAACAAGCTCCGCTCCCACCTTCGCGAGTACTTCCCCGGCTGGCTCGCCGCCGGCCGCCGCAGCGACTCCGGCGCGGGCTGGTCGGCTTGCCCGCGCCCCGCTGCAGGCGATGCTCAAGCGGTCGCAGCGCAGTCGCGCCCGGCCACGTCGGCGTACGGTCGTCGGCAGGCCCCGCAGTAGGTGTCCAACGCGTCGATCCGCTGCTCGGTCTTTGTGCGGCGGAGGAGCAGCGGAGGTCGGCGATGCGGGCCACGGAGTCACGGAGTCGTCGACGGCGATCTCG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : CTGCTCCCCGCACCCGCGGGGATGCTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9174-9748 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVE01000025.1 Streptomyces goshikiensis strain JCM 4640 sequence25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9174 29 100.0 32 ............................. TACTGGGGCGGCTGGAGGTGGCCGCGGCTCAA 9235 29 96.6 32 ......T...................... GGGGACTCGGCCAGCTCGTCCATGCTGGTCGG 9296 29 93.1 31 ............T...............G TGCCCACCCTGGGCCGGTACGTCATCCTCCC 9356 29 100.0 32 ............................. CGGCCCCACCGGCCGGGGAGGCCGAGGCGGCA 9417 29 96.6 30 ........................C.... CAGCATCCGCTTCACCAGCCCCCGCCGGCT 9476 29 96.6 32 .....T....................... GAGACGCCCACCCGGTCAATGGTCTGGCCTGC 9537 29 96.6 32 ...............A............. GGAGTCGATGGTCTTGGCATAGCCGATCTGGC 9598 29 93.1 32 .....T..T.................... TGGTGAAGCTTGACGATGACCGTGCCGTCCGG 9659 29 100.0 32 ............................. GGCCGAGCCCTCACCAGAGTCGTCACCATGAC 9720 29 96.6 0 ...........C................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : CGCGCCGATGGCGCGCCGGAAGACGGCCGTGGCCGTGTCGAGCCGCTGCTCGTGCTCCTTCTCCTCGGCGACCCTGGCGAGATGGTCCTTCATGGACATGCCCGCGGTCCGCGGATTCCTTACCCGCTGGCTCTTCGAGATCCCGCCCGGAGTCTTCATCGGCGGACCGTCTGCCCGTGTCAGGGCGGCGCTGTGGGAGGAAGTTCGGCGATACGCGGGCATGGGGCGCGCTCTTCTGGCGTACAACACCGACAATGAACAGGGCTTCGCCTTCGAGGCCCACGACCACAAGTGGCGCCCGATTGATCATGAAGGAGTCACGCTGATCCACCGCCCCAGTGACCGCGTCGCTCCACCGCCGCCGAGCCGCCAGGGCTGGAGCAAGGCGTCGAAGCGCCGCCGTTTCGGAAACAGGTAGATCCGATTGATACCCTATGTCGGAATCTCGGGAAGTGGTTCAAAGTGAGCCGGATTCCGTAGAAACTCGCAGGTCACGAAGA # Right flank : CAAGGTGCTGGCCGTCAGGTGTTCTCTCACCACCCCGAACGCATGCCGAACGAGGAGTCCGACGAGATCCTTGACGCCCTCACGAGGGTCATGTTCCTGGGCATCGGCCACCCGGACCGTCCGAAGCTGGTCGTGATGGGGAAGACGACCCGCCGAGGGCATAGACGACGTCCCCTCCCCGGGCCCCCCGCCCAGCACCTTCGACTCGGTCCGCTGGGGTGCGTGCGGGGCCTTAATGTCCGGCTGGACAACCACAAGGCCCCGCGGACGCGGTGACGTTCAGAAAGGCGCGAGCCCCTTTGCAGCCGGCTCGGGCCCGGCATCCTCGAACATCGGCAGCAGCAGGTCCGAGTCTGCCGGGATGAGGCGACCCGAGGCGATGCAGCTGATCGGGGGGAGCCCGTGGCGGCGGTTCTGCGGCCCCGGCGGGTCGTGCCGGGCCAGGTGGCGCGTGTCCGGGCTGACGGCGACGGAGCGACGGCAGGCAGGGCAGGTGATGC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34061-34395 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVE01000023.1 Streptomyces goshikiensis strain JCM 4640 sequence23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34061 29 79.3 32 ...T.T.....GA.T.........C.... GTCAACGCACCCTGGCAGATGGCCGAAGTCCT 34122 29 93.1 32 ...........G..T.............. CACCAGCCGGTGCGCTTGGCGTTCTTCAAGAC C [34127] 34184 29 96.6 32 ..............T.............. CTGATGCTGCTGGCGGGCGCGCTCGGCGGGCT 34245 29 100.0 32 ............................. GTGGTGGCTCCTCGGCGGGGGCGGGCGGTGGT 34306 29 100.0 32 ............................. GCCCTCACGTTGCGCAGCAGGTTCGGGTGGTA 34367 29 93.1 0 ....C......G................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.7 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : GCGCGTCGAGGACCCGGAAGACCGCGCAGAGGCGTTCGCCGCCGTGGCTGGGCATCTGGGCCGGGTACCGGCACGCTTGACGCCCGCCAGGTACCCCGAAGGTCCTGCCCCGTTCACCCAGACGCTCCGGGTCCTGGCACTGGCGGCCTCCCCGGACGTCGACGGGACCGTGGCGGCAACCGCTACGTTCCTAGGCAAGGCCGTGAGCGGCCCGGGCTGGCACACCGCCCTGCCGGTGCTGGCGCAGCTGGCCCCGGAGGCGGTCGCCCAGATCCGCGACATCACGTTCGCGCACTTGGGAATTGACAGCGCCTGAGGCGTTGGGGAGGCCGGGTCACGCCGCATCCGCACAAGGACAGCCCTGGCGGCAGCCGTGCCGCTGGGGCTGGGTGTGGGGGCGCTGCACAGCAACCCTGCGGTCGCGGCCTGATTGCTCAACGGAGGCGAAGCGGCCTGAAGCAACGTGCTGGTCGCATAGAGTCCATGGCCGGACAGCAAGC # Right flank : CTGCCGACCGTTCTTGATCTTGCTCCGGGAAGGGGTCGCTTTCTATGACAGTCGCCCAGCGTCTATCCATAGACCCTGCTCGGTCCAAGAGGACACCGCTGTTGTCCTTCGCCCGCTCATGCCGGGACGCCCTGCGCTGTCCCGGCAGCCCGCAGAGGAGTCAGGTGACCAGCAGCGGATCAGCGTGCAAAGGTGCTGCGGCGACGGCGAATGCTGGCATCCGTGGCGTGCGGGGCGGTGACGGTGCAGTCCTTCGGAACGGTTCGGATGGCCAGGGTCACACCGCTGGTGATCTGGCAGCGGCGGCCGATGGTGACGCCGGGACCGATGCTGATGTTGTTGCCGGTCTGGGTGTCGTCGCCGATGAGGGCCCCGAACTGTGTGGTCCCGCACCGGTAGAGGCCGGTCATGGTGCGGATGATCACTTCCCGATCGGGTGTACGCATGTCCGTGGTCGTGTTGATCGCGGCCACGGTGACGCCGGCGGAGAGGTGGGCTCG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39973-40246 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVE01000023.1 Streptomyces goshikiensis strain JCM 4640 sequence23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39973 29 100.0 33 ............................. AGCATCCTGGCCGGGCTGACGCTCATCCGTGAG 40035 29 100.0 32 ............................. GGCTCAAGACGTCCTCCCGAGTCAAGGCGTCT 40096 29 100.0 32 ............................. CGTCGTCACGCAGTACCGCGACAGTCAGACCG 40157 29 100.0 32 ............................. GAGATTTACCGCTTCCCGAGCCACAGCCGAGA 40218 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : CTATTACCGGAACACCGGACGCAACCGAGTCTGGCTGGCGAAGCGGAACCTACCCGCCGTGCTGGTCCCGGTGTACCTCGGCTCATGGGCGGCGTACACCTTTGTCCAGCGGCCCCCGCTGGCAGGGCTGAAGTCGTGGTGGGCCGGGTTCTTCGAGGGCGTGCGGACAGCGTGCCCGCCGCGCCACCCCATACGGTGGCGGACGGTGTGGCGCATGACTCGACTAGGCCGGCCGCCGGTGATCTAGCACCTCTACTGCTGCTCGCGCACGTTGCCCGGGACGCTTCAGCGCTCCGGGTAACGTCCGGGTTCGGCCGCGCCGAGGTACTGAAGTGCAGTGACCGCGTTGCTCCACCTCCGCCGAGCCGCCAAGGCTGGAGCAAGGCATCGAAGCGCCGCCGCTTCGGAAGCAGATAGATCCGATTGATACCCTATGGTCGGAATCTCGGGAAGTGGTTCAAAGCGAGCCGGATCCCGTAGAAACGCGCAGGTCACGAAGA # Right flank : CGCGGCCTCCAGGTAGTCGTGCTGGTTAAGCGCCAGATGTAGAGGTGTTGCGGGGTCTGCACCGCAGGTCAGCGGTTGCCGGTCCAGACGATGCGCTCCGCGAATCCGCCCCGCTGCTCGGCCTTGGACGCCCGGATCTTCTCCAGCTGAGCCGGATCGACGCCGAGGTCGGCCGCGAGGGCGAAGGCGACCTCGAGGACGTCCGCGAGCTCTTCGGGGGCGTCGGTCTCGTCCGCCTCCATGTACTCCGCGACTTCTTCCTCGAGCTTCCCGCGGAGGCGCTGCCGGTACTCGGCCGGATCGGCCACGTAGACCTCCGGCTCGGCTCCGTCCGCGCGGATGATCTGAGGAATCCGGTCCCGTACCAGCTTGCCGTGGAGCACGTACTTCTCCTGCACCAGATCGCCATGGGCCGGCCAGACGGCCGGGCCCTCATGTTGTTCGAGCCTAGAGATGGGGCCTCAACTGGCGCCATCAGAACCAGAAACCCCACCCGCAGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 45981-46131 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVE01000023.1 Streptomyces goshikiensis strain JCM 4640 sequence23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45981 29 100.0 32 ............................. GCCTCGGCAAACATCGGCGTCGACGGTGTCCA 46042 29 100.0 32 ............................. ACTGGCTCCTCGGCACCAACGAGGAAGTCCCC 46103 29 93.1 0 ..............C.........A.... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 CTGCTCCCCGCGCAAGCGGGGATGGCCCC # Left flank : GGAAGAGATCCTCAAGGAGGCAGGACGCCTGCTCGCCGGACCCTGGCCCCCACTGGGCTGATCTCACCGGCGGCAGACGAGGATGCCGCCAAGGCAAGTGATCTCGTACGCGCCATTGCGGGCGATGCCGTCGGCGACGAGGCTGCGGGCCTGGTCTATGGTCGCGTCGAAGGGCACGTCGTGCTGGTCTGCCCAGGCGCGGTACGAGGCCATGTGGGCGATGACGGGCTCGGGGTCGCGGACCGTGATGGTCCCGGCAGTTCGGCGACCTCCACCCGTCTGAACTCCTCGCCGAGGAAGGCTGGGGCCTTCTCCAAGGAGACTCCGAGGCGGAGCCCTTGAGCGCGCGGGGGCACGGGCCGGCTATGGGCCGATGCCACTCGGGAGGCCAACAGACATCCAGTGGAATACGGCATTCAGGTGGTATGAGTCATGTGCGCGTATCTCTGGAAGTGGTTCAGAACAAGGCGCAACTGGCTTAAAGTGACAGGTCATTGAGA # Right flank : CGCCGGCACGTCGGGAAGGTCGCCGAGATGGCGCTGCTCCCCGCCGCCCGCGTCGTCAAGACGCGGAGGGTATCTGTACCGCTGAGGTCGGTCGAAAGGCAGATCGTGGATCCGACGATGGGGCCGGCAGTGCAAGTGGTGCCCGCGGTGATCGACGCCCCGGCACGGTTGACGTGCGGGGTGCCTCTCAAGCAACGAGAGGCGGAGTGTGACGGCGTGCAGAGTGGACCGTCGGCTGTCGGCTGTCGGCTGTCGGTTGTGGCTATCAACGAGAACAAAGTGATCGCGGGGCCGGCCGGGCCGGTATTGCCGCGTCGGTCCACCATCAGGCGGGGCCGACCAGCGTTACGAGGAGCTGCCGGTCAGCGTGTCGCACTCCACGACCACGTTCACCGTCTTTCTCAGTCATGTGTCAGGGGCACCTCAATGAGTCCCTGACCGCGTATGGCAAGGTATGCCGACGACTCGCGCCGGCCGGGCTCCGCGCGGGACCCCGGCCG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCAAGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 47283-47749 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVE01000023.1 Streptomyces goshikiensis strain JCM 4640 sequence23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 47283 29 100.0 32 ............................. AGCAGATGGACGCCGCCCGCGATCGCAACCGA 47344 29 100.0 43 ............................. GGTACGTACGACTCGACCTCGGCCACGGCCGGGCCGGTGTTCG 47416 29 100.0 32 ............................. TTTCGCGAGCCAGCCCGTCAGCGTTACAGGCC 47477 29 100.0 32 ............................. GCCCCGCCAGGCATGCTAGTTGCGGTGACCTG 47538 29 100.0 32 ............................. TCCATGGGCTGGTTGAGGGCCCACTCGGCGCA 47599 29 100.0 32 ............................. AGGGTGGTCGGCTCGGTGGTGCAGCGGTGTTC 47660 29 100.0 32 ............................. CACAACGCCTACAAGGTCGAGGTCCACGAGCG 47721 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= =========================================== ================== 8 29 99.6 34 CCGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : GCTCGAGCCCGGGGAGCAGGTTGAGGTGACGACCATCGTGAACCTGAGGTCCGTCACCGTGCGCCGGACGGCAGCGTTCGCGGCAGCCTCGGCCATCCTGAGCGGCGGTGGAATGGCCGTGGTCCCGGTGCCGACCCCCATGTACCTGGCGATGACCGACCAGCGCATCTTCATTTTCCGAGCAAACCCGACGTTCGCCCGGCCGGAAGAACACCTGATGACGATCCCGCGCGCCGGTCTCGTCCGCTCGGAGATCAAGGAGCGGGTGCTCAACTCGTCCTTCATGATCTCCTCGGCTGACAGTGAGCAAGGCCTGAAAATCATCTTCCCGCTGGTAAGCCGCAAGGAGCGGCACGTGATAGCGGCCGCCTTGCCTCTGGCCAACTGACGGCCCAGGACAGGGCGGGAGCGCAGGCAGAACCGATTGATACCCTATGTCGGAATTTCGGGAAGTGGTTCAAAGTGAGCTGGATCCCGTAGAAACGCGCAGGTCACGAAGA # Right flank : CCAGGGGCCGAACCAGTGGCCGGGACGAGGTGTTCTGCTTGTCGGTCGACTGCTGGTCGGTCGACACTCTCTCGTAGACCAGGTTGGCCATGCCACTCCCGTCTTGGGTGGTCGCATTCGACCCTAGCTGCCAGCAAACCCTGTCATCATCCGCCATCGGATCTGAGTGGATCGGCGGCGCCGCCGGGCCATGAAGAGTCCGGGTTCATTGGACGTCCGCCGCACCTGTCGTCATTCGATCGTTTGCCGATAGGAGGCCGCGGTTGATCCACCTGCCCGCCGTCAACCGGGTAGGCGGCGGGAGGTGCCGGCCGGGTGACCGGTGGGAGACTTTCGACCGTGTCTGGCCGCGCCAGTTCTTTGGGTGGTTGATGCAGCGCTCAAGGTGTTGCGCGGCAAGTCGGTCAACGGCACGACCGGAGCAACGATCCCATGATCGGAAAATGAGGGTCATCGGGCCGGGGTGATTCGGCGACACTGTTGCGATGAACTTCGGGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 972-28 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVE01000027.1 Streptomyces goshikiensis strain JCM 4640 sequence27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 971 29 100.0 32 ............................. TCGAAATCGACCACCAGCAGCCGTCCACCCAC 910 29 100.0 32 ............................. GCCGCAATCACCAAGGCCGGCGGCACCGTCGG 849 29 100.0 32 ............................. CCGCGGTCGCCGGTCGGTCCGCCGGACTTCTT 788 29 100.0 32 ............................. TGGCTGGCACGGCAGCGCGAGACGTGGGCCGA 727 29 100.0 32 ............................. GAACATCAGGAGCCAATGCTCGACGTCACCCA 666 29 100.0 32 ............................. GTCGTCCGGTACCTGGAGCGCCACGAGCCGGG 605 29 100.0 32 ............................. GTGACCTGCAAGACGCACCCCCGGGGTTGCCT 544 29 93.1 32 A.......................G.... CGCACCAGCGATACCGATGAACGCGGGGACGG 483 29 100.0 32 ............................. GCCTTGAACGAGTCGCGCAGGCCGAGGAGCTG 422 29 100.0 32 ............................. CCCTGGAGGACGCCGGCCTCTGAGTGCGTCAG 361 29 100.0 32 ............................. CACCTCGGGCACCGTCAGCTGGTCGCGAAGCG 300 29 100.0 32 ............................. CACAGCATGTTGTTGAGGCACAAGGCGACAGG 239 29 100.0 32 ............................. GTGTTCACCCTTTCGCTCATGGCCCCGTCGGT 178 29 100.0 32 ............................. TTGGTCCGGTCGACCAGTACCGCGCGATCGCC 117 29 100.0 32 ............................. AAGATCGCCGTGCTCATTCCGGTCGCGATGGA 56 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTCCCACCCGCAGGCGCGGGAATCAGCGG # Left flank : CACCGGCCTACACGATCCCCGAGCCCTCCAGATCGCCGTGGCTGACCGCACCGGCATCCTCTTCAACGAACTGATCAACCCCGACCACCCAGTCGACCCCGCCGCCACTCGCCTTCACCAGCACACCCAGCACACCACGCGCGACGCACCCAGCTTCAGCGACGTCCTCCCCCAACTCACCAACGCCCTGCACGGCCGTCACTGCATCGCGTACAACCTGCCCTTCGTCCAACAGGTCCTCCGCTCAGAAATTGCACGCCACCACGGATCCGCCAACCCCCACGCCCCGCTCCCAGCCTCCGCAAGCTGGGAGGACGCCATGATCCCTATCGCCCAATGGACCGGCCTCTGGTCCGTGCAACACCACAACTACCGCTGGCCACGCCTCCCCGGCACCCACGAAGCCACAGCCAAATGCCAGGCAGTCCTCCGCCACCTGACAGACCTCGCCCACAACTAAAGAACGAGCAAGGCCCACCAGAAACCCCAAACCAAAGAGG # Right flank : GTTGGTCCGGTCGACCAGTACCGCGCGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCACCCGCAGGCGCGGGAATCAGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 2-3811 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVE01000031.1 Streptomyces goshikiensis strain JCM 4640 sequence31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2 29 100.0 32 ............................. TTCGTCGGCGACGCCCACCAGCGCGACCAGGT 63 29 100.0 32 ............................. AGGCCGGCATCACGGTCCCGGCCGCCGACCTG 124 29 100.0 32 ............................. GCGCGGGCCGACCTGGAGAAGGCGCAGGAGGA 185 29 100.0 32 ............................. TGCCGGCGGCGCGCTCCTCGAGGACGCACACC 246 29 100.0 32 ............................. GCAAATGTCATCGCTCTCCGGCAGCCCTCACC 307 29 100.0 32 ............................. TGGTTGACGTACCGGCCCCGTCCGGCGACGTC 368 29 100.0 32 ............................. GCGACTTCCCGCAGCATCTCGGCACTGTCGGT 429 29 100.0 32 ............................. TGGACCAAGACGAACACGCCTTGGAGCTCCAC 490 29 100.0 32 ............................. GTACTTACTCCAACTGAGGCTGCGGAGGCAGC 551 29 100.0 32 ............................. TCAGGGATTGCCCTCGCGCTGGCCGAGGCCGT 612 29 100.0 32 ............................. TCGCCCAGGGCCGGGGCTAGGGACCGAAGAGA 673 29 100.0 32 ............................. ATCAAGACCTTCGCGTCGTCCACGGTCGCCGC 734 29 100.0 32 ............................. GTTGTCGACCGGGGTGACCATGTGCCCGGCGA 795 29 100.0 32 ............................. TCGGGCCCGACTGTCACACGGGACCCCAGTCC 856 29 100.0 32 ............................. CTCGCACTCCCGCTTTCTAACACGCCCTCTAG 917 29 100.0 32 ............................. GTGGCGCAGACATTCCCGTACAAGACGGATCG 978 29 100.0 32 ............................. ATCGTTGTAGGCGTCGGAGCGGGCGAAGGCTG 1039 29 100.0 32 ............................. CGAACAGGAGGAACGCGCCGATGCCGCCGTGG 1100 29 100.0 32 ............................. CGGATGGACACGCCCTGGAACACGGCCTCGGC 1161 29 100.0 32 ............................. CACCTGGACACCCTCGCTGACGCCCAGCTCAA 1222 29 100.0 32 ............................. ATGGTCCAGGTCACGCGGAAGTTGAAGGCCCA 1283 29 100.0 32 ............................. AGGTCTTCGTCTTCCGGATGGGGCGCCGGACG 1344 29 100.0 32 ............................. TCGCCAGCCTTGATGACCTGACCGCCCACAGC 1405 29 100.0 32 ............................. ACCAGCAGTGCGCTGACCTTGGCGGTGTCCTG 1466 29 100.0 32 ............................. GTGATGAAGGACGAGGTGGACCGCGCCGCCGC 1527 29 100.0 32 ............................. TAGTGGTGGAGCCGAAAACGATGGTCATATGA 1588 29 100.0 32 ............................. GCGCAGAACCTTGGCGACCTGGCGAACGCGGC 1649 29 100.0 32 ............................. TCCCGCTGCCCCGCCTTCCGAGGGCTGAAGAT 1710 29 100.0 32 ............................. ATCGACTGTTCGGCCTGGCCTGAGCCAGGAGT 1771 29 100.0 32 ............................. TCGTGCTTCCAGCTCCGCTCCCGCGCGGCGGG 1832 29 100.0 32 ............................. CGCTCCAGGGCGGCCGCGGTGAGGACGAGGAT 1893 29 100.0 32 ............................. CTCAACAGCGTTGGGCGCCGTTTCCAGCTGGC 1954 29 100.0 32 ............................. GTACCTAGTCCACGGCCAGCGGACTTCCCCTG 2015 29 100.0 32 ............................. ACGCCGAGCGGCACCAGCTCTGTCGTGCCGTC 2076 29 100.0 32 ............................. GCGATCCCCATCGGCGTACGGTCGTTCGCCTG 2137 29 100.0 32 ............................. GTGGCGCTGGTACAGAAGCGGCGCGATGCCGC 2198 29 100.0 32 ............................. CCCTCGCCGAGATCACCACCGCCTGCTACGAC 2259 29 100.0 32 ............................. CCGCCTGACGCTGCGTCCGCAGCATCCGCGCC 2320 29 100.0 32 ............................. GCGGTGTATGCCGACGGCGTCCGCAAGGGCGA 2381 29 100.0 32 ............................. GTGTTCGGTCTCGCCGGGCAGCACGTCGCAGG 2442 29 100.0 32 ............................. GCCCCGTCGATGCGGGGCCGAAGAATGTGTGT 2503 29 96.6 32 ............................C GGGGGACGGCCGCGTTCTCGGGCTCGAAACCC 2564 29 100.0 32 ............................. CTCATGTTGAGGTCGACGCAGACGAGGTACGG 2625 29 100.0 32 ............................. GTTGGCCAAGGCCTCCTGGACGCGCGACTCCG 2686 29 100.0 32 ............................. CGGGCGCAGGTCGAGGCGTGGCTGGTCGAGGT 2747 29 96.6 32 ............................C CTGGCAGGTCCATGGGCTGCTCGCCCGTGGAC 2808 29 100.0 32 ............................. GCTAATCCGGGGCTCGGCGCTTCCCCCTCGCT 2869 29 100.0 32 ............................. TCGCAGAACCCGGACCCGGACCCGATGGGCTG 2930 29 96.6 32 ..........................C.. GTCGCGGTGATCATCGCGGCCACAGGGCTGGT 2991 29 100.0 32 ............................. TCCCAGATCCAGGCCGGTGACCTGCTGTGCGG 3052 29 96.6 32 ...........C................. TCGTTGGTGCAGATCGGGCAGCCGGTCCCGGC 3113 29 100.0 32 ............................. GGCGGGGCGGAGGCGCTCCGCGCCGACCTTCT 3174 29 100.0 32 ............................. CTCCTATCCGAGCACCCGGAGCAGCCGGTCGG 3235 29 100.0 32 ............................. GTGGGCCGGAACTGGTGCGGGTGCAGGGCAGG 3296 29 100.0 32 ............................. GTCGTGGAGAGCAGGCAGGCGCCGTCGATGCT 3357 29 96.6 32 ......G...................... TCGAATCCGCCGGCCCGTGCGGGCCACCATCG 3418 29 100.0 31 ............................. AGGTCCACTGCGTCCGCGGCCGCGCTCTTGG 3478 29 93.1 32 .......TT.................... ACTCTCGACGCCAACCGTGCCGTCCTCATCAA 3539 29 96.6 32 .A........................... GCAGCCCAGACTCTGCCGAAGTCGATGATGGA 3600 29 93.1 32 .A....G...................... GCATCGACGATCCCCGCGAGGGGCTAGAAGAC 3661 29 100.0 32 ............................. TGGTTCAGCGTCATGTTGATGCTGGACTCGGT 3722 29 96.6 32 ....................A........ TCATGCCGGCCATCCGGGTGCAGCACCAGGTG 3783 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 63 29 99.4 32 GGGCTCTCCGCGCAGGCGGAGGTGGGTCG # Left flank : CG # Right flank : GCAACCCGCGAATCTCCTGCGGCATGACCGGAGCAGCGCCTCAACCCTCTGAAACGATCTCAGGCCCTTTCTCGGGCACGGACCTCTTACTGCCCTAACCCAACACGCACCGGACACCTCATCCAGCGTCACGGAACGTCACTACCAAGAAGGGGGGGAGGCGGTGGCAGCCAACAGCTCCGCAGCCACTCCCCGGGCACCTCAAGGTGCCCACGACCACACAGTCGAGAACTCCACCCAGCGGTCACCAATCGCGCGTGATGACCCAGCAGAAGCCCTGCTGTCCGTGCGTCAGACGTGCGTCACGTGCGTCGAATATGCGTCAAGATATCGCCCGTAACGCATGTAATACACACTCAACAAAACCGCAGTTCAGCGGCCCTTTTCAGCAGGCTCAAGGATCGCGACGCGCTCGACGCGGTGGGTACCGAGAAACGCGTCACGGGTCAGGAGATCGGCGCATGCCCGCCTGGTCGGCAGGCGCTCGGTACACGTGTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCTCTCCGCGCAGGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //