Array 1 3111304-3112708 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029745.1 Pseudomonas aeruginosa strain AR_0110 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3111304 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 3111364 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 3111424 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 3111484 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 3111544 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 3111604 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 3111664 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 3111724 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 3111784 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 3111845 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 3111905 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 3111965 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 3112025 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 3112085 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 3112145 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 3112205 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 3112261 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 3112321 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 3112381 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 3112441 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 3112501 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 3112561 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 3112621 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 3112681 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3122883-3121234 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029745.1 Pseudomonas aeruginosa strain AR_0110 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3122882 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 3122822 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 3122762 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 3122702 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 3122642 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 3122582 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 3122522 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 3122462 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 3122402 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 3122342 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 3122282 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 3122222 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 3122162 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 3122102 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 3122042 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 3121982 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 3121922 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 3121862 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 3121801 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 3121741 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 3121681 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 3121621 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 3121561 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 3121501 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 3121441 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 3121381 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 3121321 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 3121261 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 5947390-5946462 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029745.1 Pseudomonas aeruginosa strain AR_0110 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5947389 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 5947329 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 5947269 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 5947209 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 5947149 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 5947089 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 5947029 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 5946969 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 5946909 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 5946849 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 5946789 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 5946729 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 5946669 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 5946609 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 5946549 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 5946489 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //