Array 1 171149-173130 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPE01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712388, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171149 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171210 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171271 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171332 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171393 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171454 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171515 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171576 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171637 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171698 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171759 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171820 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171881 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171942 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172003 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172064 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172125 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172186 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172247 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172308 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172370 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172431 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172492 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172553 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172614 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172676 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172737 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172798 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172859 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172920 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172981 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173042 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173103 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189638-191435 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPE01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712388, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189638 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189699 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189760 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189821 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189882 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 189943 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190004 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190065 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190126 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190187 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190248 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190309 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190370 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190431 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190492 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190553 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190614 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190675 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190736 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190797 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190858 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190919 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190980 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191041 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191102 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191163 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191224 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191285 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191346 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191407 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATAGCGTGAGGCAATTCTTAGCGTTGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGTTGCACCTGAGCGCCCCTTCACTGGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCAGCTTGCGGAAAAGATCCGCACTGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 191715-192232 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPE01000001.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712388, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191715 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191776 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191837 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 191898 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191959 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192020 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 192081 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192142 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192203 29 93.1 0 A...........T................ | A [192229] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAAAAGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCAGATTTACGACAACAACCCGGCAGCGGTGGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //