Array 1 451816-453188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEJ010000003.1 Salmonella enterica strain L5-3 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 451816 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 451877 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 451938 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 451999 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 452060 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 452121 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 452183 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 452244 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 452305 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 452366 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 452427 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 452488 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 452549 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 452611 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 452672 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 452733 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 452795 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 452856 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 452917 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 452978 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 453039 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 453100 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 453161 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 469448-472408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQEJ010000003.1 Salmonella enterica strain L5-3 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 469448 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 469509 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 469570 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 469631 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 469692 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 469753 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 469814 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 469875 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 469936 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 469997 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 470058 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 470119 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 470180 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 470241 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 470302 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 470363 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 470424 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 470485 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 470546 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 470607 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 470668 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 470729 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 470791 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 470852 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 470913 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 470974 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 471035 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 471096 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 471157 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 471218 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 471279 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 471340 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 471401 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 471462 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 471523 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 471584 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 471645 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 471707 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 471768 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 471829 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 471890 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 471951 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 472012 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 472073 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 472134 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 472195 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 472257 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 472318 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 472379 29 96.6 0 ............T................ | A [472406] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //