Array 1 52487-54528 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJV01000012.1 Salmonella sp. zj-f95 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52487 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 52548 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 52609 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 52670 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 52732 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 52793 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 52854 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 52915 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 52976 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 53037 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 53098 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 53159 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 53220 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 53281 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 53342 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 53403 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 53464 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 53525 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 53586 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 53647 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 53708 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 53769 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 53830 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 53891 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 53952 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 54013 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 54074 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 54135 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 54196 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 54257 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 54318 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 54379 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 54440 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 54501 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 97.6 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72161-74142 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJV01000012.1 Salmonella sp. zj-f95 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72161 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 72222 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 72283 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 72344 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 72405 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 72466 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 72527 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 72588 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 72649 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 72710 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 72771 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 72832 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 72893 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 72954 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 73015 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 73076 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 73137 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 73198 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 73259 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 73320 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 73381 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 73442 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 73503 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 73564 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 73625 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 73686 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 73747 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 73808 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 73869 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 73930 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 73991 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 74052 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 74113 29 100.0 0 ............................. | A [74140] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //