Array 1 42871-44119 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGS01000013.1 Escherichia coli strain MOD1-EC5136 MOD1-EC5136_13_length_134430_cov_63.4929, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42871 29 100.0 32 ............................. CGTTTTGCAACGTCCAGCGCCACAGAGTCTAG 42932 29 100.0 32 ............................. TGTTCCGGTCATATATTGTCAACATTGCGTTG 42993 29 100.0 32 ............................. ATCGATATGTACGTTAGCGAGGGGATCACGCA 43054 29 100.0 32 ............................. GGGACCGCCGTAGATGAAATTAAATCATTCAG 43115 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 43176 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 43237 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 43298 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 43359 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 43420 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43481 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 43542 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 43603 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 43664 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 43725 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 43786 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 43847 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 43908 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 43969 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 44030 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 44091 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69819-71922 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGS01000013.1 Escherichia coli strain MOD1-EC5136 MOD1-EC5136_13_length_134430_cov_63.4929, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69819 29 100.0 33 ............................. AGATTGCCAGCCAGCTTAATTTGCCATCCGCGC 69881 29 100.0 32 ............................. TATTTTGTCGATAAAGTCGGAGTTTTCATCCT 69942 29 100.0 32 ............................. CCGCTGAATATATATCGGTACGCCAGAGATAT 70003 29 100.0 32 ............................. CAAATTAGGTTCCAGTGATACCCTGCAAGGTA 70064 29 100.0 32 ............................. CCATAAATATTATTCCAATCTGGTCGGCTATC 70125 29 100.0 32 ............................. AACGGCTACGGCACGGAGGTTACCAATCAGAT 70186 29 100.0 32 ............................. ACATACTTTGCAGGCGATCGGCAGCTCTGGAA 70247 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 70308 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 70369 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 70430 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 70491 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 70552 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 70613 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 70674 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 70735 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 70796 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 70857 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 70918 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 70979 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 71040 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 71101 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 71162 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 71223 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 71284 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 71345 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 71406 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 71467 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 71528 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 71589 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 71650 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 71711 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 71772 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 71833 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 71894 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //