Array 1 36-508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYA010000059.1 Limisphaera ngatamarikiensis strain NGM72.4 VerNGM_NODE_106_len_437_cov_65_260872.60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 36 36 100.0 36 .................................... TGGACAGTGTCCTGTACATCTGTCCCGTTGCGTGAC 108 36 100.0 37 .................................... ATTGCAATCGCCGGGTGGAACGCGACACCACCCGCGC 181 36 100.0 36 .................................... GCTCCCCGATCTGCGCCGCCCGCTGCTGCAAGTTGC 253 36 100.0 39 .................................... GCTCGAGGGATTTCAATTCTTGGTAGCAGGTCTCCAGTG 328 36 100.0 37 .................................... ACGGCAGACTCGATCAGTCTCAGCAACTGACCGGCTC 401 36 100.0 36 .................................... ACCTGCAGCGCTGCCAGATCGAATGCCATGCGTCTC 473 36 97.2 0 G................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 99.6 37 ATCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGC # Left flank : ATCAAAGCGCGCTGGGGCGGCCCGTAAGGCGGTGGA # Right flank : C # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.40,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [16.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 9731-14967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYA010000018.1 Limisphaera ngatamarikiensis strain NGM72.4 VerNGM_NODE_29_len_14929_cov_30_337330.19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 9731 37 100.0 38 ..................................... CCCGGACCAAGCCGGGGCGATCAGGCGGATCAGATCTT 9806 37 100.0 41 ..................................... ACGACCAGGGCCCCATCGACCATCTCATACCGCCCGGTCCA 9884 37 100.0 38 ..................................... AAGGTGTACGCCAGGAACGTTCCCGGAGTCCAACGGTT 9959 37 100.0 41 ..................................... GGGTTGTTTTCACTTAACCTCGTATCCGGTTTTGACCACTT 10037 37 100.0 37 ..................................... CGATAGCCCCGGCAACATCCTCAACCACACCACGTTC 10111 37 100.0 41 ..................................... GTAATGGTAAGAAAGCAACCACGCTGCGGATCCAACTTGAC 10189 37 100.0 39 ..................................... AGCACACCACGTGCCAAGCGCTTGAAACGCTTGAAACCA 10265 37 100.0 37 ..................................... TCGTACCTCGCATCCAGAAATGCCTGATAGGCCTCTT 10339 37 100.0 35 ..................................... ACGGATTGGGACCAGGGTCTTGGTTTTCATGGGTG 10411 37 100.0 36 ..................................... GTTGACGTTGTAGCCTAACTCTTGCCACAACGCGAT 10484 37 100.0 38 ..................................... TCGCTCTCCCGGGGGGCTTCTTGCGGCTGCCCCTGCCC 10559 37 100.0 40 ..................................... GTCAGCACCCACGATAGGCTCTTCTGCTGGTGTCTGTTGG 10636 37 100.0 39 ..................................... TCTTGGATAGGAAGGAACCCCCCATCGGGGTTCCGCCGA 10712 37 100.0 38 ..................................... CATCAGGTCCCACGATCGGCTCCTCTTCCGGACATGTC 10787 37 100.0 36 ..................................... ACATCGGAGTATCCGTTCTTTTCGAACACCTCCGTG 10860 37 100.0 39 ..................................... TCATGGTATCCTCATCTTGTCTTTCCCCTTTCCGCCGGC 10936 37 100.0 41 ..................................... ACCCGCCGGAAGGTGGGGCCGATCCTTCGATCAGTCTCCCA 11014 37 100.0 39 ..................................... GGCGTCACCAATGCAGACGAACGGCCCGTCATGGAGCCG 11090 37 100.0 38 ..................................... TCCCGATTTGTTTTAGCGTATATCGTTTCATACCACTT 11165 37 100.0 38 ..................................... CCGATACTTGGCGTCATCATCTTCGAGCTGGGCAGCAA 11240 37 100.0 39 ..................................... GGATCCCCCGTCATGGGGGACTCGATTACAATACCTTGA 11316 37 100.0 40 ..................................... TCATCCTCCGGCAGGCAGTTGATCAGCCCGATGACCTGCA 11393 37 100.0 37 ..................................... CCCACTCTTAATCTTCATGTTTTCCTCCGCTCTTGCG 11467 37 100.0 41 ..................................... CACTGTCACAAAGTCGCCGTGATCCTCCACATGAGCACGTT 11545 37 100.0 37 ..................................... ACACGGGACACCGAGGAACGCATAGTGACGCGATACA 11619 37 100.0 36 ..................................... AACACCCGCCAGCATTCATGCCGGCGGGTCCTATCG 11692 37 100.0 41 ..................................... GCGCTCCAGGTCGTCCAGGGTTCCCCGGAGGAAATCCTCCA 11770 37 100.0 40 ..................................... CTCCCCAATAGCGGAAGTCCCACAAGAGCCCACGCATGGC 11847 37 100.0 36 ..................................... CCGGCGTTGACGCCGTGACCCCGTGGCCGTCGTGGC 11920 37 100.0 39 ..................................... GTCATGAAAGCACAGTCGCAGTACACCATCACGTGATCG 11996 37 100.0 37 ..................................... TGGCCGTCATGGCCAGAAGGTCACTTGGCCTTCACGA 12070 37 100.0 40 ..................................... GTTACAACGCGACAACACCGTTGTCGCCCACCATCATGAA 12147 37 100.0 39 ..................................... CCCCGATGCCAGGGGGTGACCTCGATGTTGTACCGGCCG 12223 37 100.0 40 ..................................... GGAAGCGTTTCAAACCGCCCTAGTTTCCGCACCGGGTTCG 12300 37 100.0 38 ..................................... TCCACGCCCGGGGTGATTGTTCCTCTGCTTAACGTATA 12375 37 100.0 39 ..................................... AAAGGCTTCCACGCACCAATGTTTTTCCCCCTTGACTGA 12451 37 100.0 40 ..................................... GGCGCGTCAGTCTTCAAACATTCGGACTGACGCGAACCCT 12528 37 100.0 36 ..................................... ACGACCCGCGGAAGCCTGACTGATCACGGATGACCA 12601 37 100.0 41 ..................................... CAACGGCCTTGCCCGACAAGTTTCCATGCCGTGTCTGTGGT 12679 37 100.0 41 ..................................... GCCTGGGTGCGAGCCGCAGCCTCCGGATCCACCACCTGGAG 12757 37 100.0 39 ..................................... CAGTAACGTCTTCGCGTTGGATTGTCTTCTTCGCATTGC 12833 37 100.0 39 ..................................... GCGCCGCCCAGTGCCAAGCCCACGGAACGGCGTGAGCCT 12909 37 100.0 39 ..................................... CCTGGTCCTGCCGCATCAGGCTCCACATCAGGAGCCCGG 12985 37 100.0 40 ..................................... ACAGTAGACGACCTTTCGTGTACCAATCCGAACCTTGCAT 13062 37 100.0 36 ..................................... AATGTAGGCAACAACGCGACGTTGCATGTTCGTCAT 13135 37 100.0 39 ..................................... CCAAGGCCGTGGCCAACCCGGTCATGGCCATGGCCAAGC 13211 37 100.0 38 ..................................... GCAAGATCAGCCGGTGGCGCAAACTTCCATTCGACAGC 13286 37 100.0 40 ..................................... CCGGGTCGCCCCGGGGATTCCCCGGGGGTCCCCCGGGGAT 13363 37 100.0 37 ..................................... AACACGGCCAAGCGATAGAATTGCGCCTTAGTCTTCA 13437 37 100.0 37 ..................................... TCGCCAACTTCTCATGTTCGTTTCGCCCTAGTTTCCG 13511 37 100.0 36 ..................................... AACTGGCTTTCGAACAAATATTTGTTCGGCTAACAA 13584 37 100.0 39 ..................................... AGGGTCACACGGACCCTGCCGTCCTCCCGCTCGCTTAGT 13660 37 100.0 40 ..................................... CCTCTGGTGGCTCGACGAGGTCGTAAACGTCGAGCAACAG 13737 37 100.0 35 ..................................... AACCCCGAAAACGCGGGTTTTCGGGGGGCTATCGG 13809 37 100.0 38 ..................................... GGGTCCCCGCCAGGCTGGCTCTCCGGCCTTCCCCGCAC 13884 37 100.0 36 ..................................... GTGACTCGAGTCACTTCTTTATCTCCTCCCAGAGGA 13957 37 100.0 37 ..................................... AACGCGGAGTGAATGCTCTTTCATACACCCAAAACTT 14031 37 100.0 36 ..................................... CCCCCGCCTGGTCCCCGCATGTGGCGACGGGTTCAT 14104 37 100.0 38 ..................................... CACGCGGTCGGCGTTGGCCCATAGTACGGCGAGGGCAA 14179 37 100.0 38 ..................................... GCGGAAACAATATAGAGAACCCCGGGCTCCGGATCGGG 14254 37 100.0 36 ..................................... GGGCACCACCGGTAACCGCTCGGTTGCTTGGGCGCC 14327 37 100.0 37 ..................................... TCACGTGATCCGCGAAGGTCAGCGTCAGAAACCCCGC 14401 37 97.3 38 ...........G......................... GCCTCCAAGGCCGGGATGAATGCAGTCCGGAAAAACTC 14476 37 97.3 39 ...........G......................... ACATCGGTGAGCCGGGTCGGGGCCGTCAGTTGACAGCGG 14552 37 97.3 36 ...........G......................... ATGAAACGCGCTCGACGGCTGCGTCTCCGAGGGCGC 14625 37 100.0 38 ..................................... TTGTGGCGGCAATGCCCCCTTCAGCGGGGGCAAGGATG 14700 37 100.0 42 ..................................... CTGCCGCATATACCGCGGCCAATGCAGGAACTCCGACAGTCT 14779 37 100.0 38 ..................................... AAACCGCCAGCCCCACCCATCACGGGTAAGGCGGAGGG 14854 37 100.0 40 ..................................... TCAACCAACGCCAGGGAGCAATCCTCCCTGCAAACTACCC 14931 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 70 37 99.9 38 GTCGGAACCCCACAAACCGCCGAAAGGCATTGGTGAC # Left flank : GCGCACGCGTCCAATACTCCGTCTTCGAATGCCACCTCGACCCCGACACCTTCGAAACCCTCTGGCTCACACTCCTCGACCTCATCAACCCCCAGGAAGATCGCATCGTCGCCTACAAACTCGACGCCCGCGCCGCCCGCGAAACCCTCACCGCAGGCACCATGGTCTGCACCGACCGCGTCGTCTGCTACCTCGTCTGATCCATGCCCAACCCCCACCCCGCAAATCCATCACCCACCCTCCCAACCACCCCAACCACGCCCGAACCTCCCCGGATCTCCCAACCCGCGCCCTCCACCCCCAACACCAGGATTTCACCCCGGCACACCCCGAAACCCCTACCTCCCGACCTCAACAACAACCTTGTCCGTACCAGCCACTTATGCCACACTTTCCCCGCACACGCGCCTCGCAGCGCTACCGCCGAAAGGCATGCCAACCCGGCTCCCGACCTGGAGCCCGGCCAACCAGCTCCACCCCATCAACTTGGGATCCGTACA # Right flank : ATCAGGAGCTCCGGCCCCCCACCCATGCGCCCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACCCCACAAACCGCCGAAAGGCATTGGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 36-4146 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYA010000005.1 Limisphaera ngatamarikiensis strain NGM72.4 VerNGM_NODE_5_len_4106_cov_27_096931.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 36 37 100.0 39 ..................................... GCAAATTTGGGCAAAAAAAACTTGGCAAGCTTTAAAGCT 112 37 100.0 38 ..................................... TGACCGGTCTTTTGCTAAAAGATTGTTGCTACATCAAA 187 37 100.0 37 ..................................... AAGTATCGTTCGGCAAGCATTTCATGTCGCCCTAGTT 261 37 100.0 38 ..................................... AACACAATCTTCATCCCAGTTGACGGCAAAGAATTTTT 336 37 100.0 39 ..................................... CGAATTGCGTGGACTCCTACGTCCTCTGGAATTCCCTCC 412 37 100.0 36 ..................................... CCCATCCCTTCTTTTCGACGCGCACCCGGACGTCGT 485 37 100.0 39 ..................................... TTGGGGCCACCAGGTGCTTTCTGTCTTCGAGTATATCGT 561 37 100.0 36 ..................................... ATGTCATGGGGACCAGATGTCCCCACTCGGCCTCGA 634 37 100.0 39 ..................................... ACCCGGACGGTGTGGGGTGTGAGGTTTACCAGCTTCATG 710 37 100.0 41 ..................................... CGCACATCAGGTCCTTTTGTACTTTCATGGCTTCAGTCCGC 788 37 100.0 39 ..................................... TGCCGTCTTCGTTGTAGCAGTGAATTCTATGGGTTAATT 864 37 100.0 39 ..................................... ACGTTCGGCGGCGGAGGCGGATGCGATCTGCTCGAGGAT 940 37 100.0 38 ..................................... AACAAACAAGACAGCAGTGCCTCCGTTACCGTTGGAAC 1015 37 100.0 40 ..................................... TGGCGTACCGCCACCCGGCAATTTCGACTTTGTGTAGTTC 1092 37 100.0 35 ..................................... TGCACCGGTCGGCAGATTTTCCAACCGTGGGCCCA 1164 37 100.0 40 ..................................... CAACTCCAGGCTTCAGACCCTTGCACGAGAATTGGCAGAT 1241 37 100.0 40 ..................................... AACGCGGCATTCCTAGCCGCGTTCCAAGCGGCCTCCACCC 1318 37 100.0 36 ..................................... GCCAAGCCGCGGCTCGGATTGCCGCGGTCCAGGCGG 1391 37 100.0 40 ..................................... CTTTCGCGGGCGAGCCGGTCCTCGAGCCAGAGGAGGGCCC 1468 37 100.0 37 ..................................... GCCGGAGCCGGAGTCGAAAAACACGGAGTCGCTGACC 1542 37 100.0 39 ..................................... GCCCACCAAGCGCGGGGTGGCGCCGGTGTAGCGCCAAGC 1618 37 100.0 38 ..................................... AGCGGCCTCCACCCGGAGGCTATGCCTCACGGGGGCGG 1693 37 100.0 39 ..................................... GTCATCTTTTCTGGCGTCTATATCGGCGCCCACCAAGCG 1769 37 100.0 41 ..................................... GGGTGAGCCGGTCGAGGTAGCGGCCCATGTACTCCCGGGCC 1847 37 100.0 39 ..................................... GCAAGTGTGGCAGCTGCCTGTTTTGCAACTGGATCCTGC 1923 37 100.0 37 ..................................... CTCATAGCGAGACGCGAATTCCCTTGCCCGACCACGT 1997 37 100.0 42 ..................................... GTACCCAAGCACGAAAGCGAACTCAAACTGAACAGCCTTCAT 2076 37 100.0 35 ..................................... TGCAGCCCAGGGACTGATGCAACCCAGCCCCGCCG 2148 37 100.0 37 ..................................... CACACCGTGATCTTCAGGACGCCGTTCACACTTGCCC 2222 37 100.0 36 ..................................... TACACGCACGCAGGCCACGATCCACGCAACGGCAAA 2295 37 100.0 37 ..................................... GCTCAAGTACGACAACGTGTCACGCCCGAACTGCTGC 2369 37 100.0 37 ..................................... CCATGTTGCGCACCAGACAGTACTCCCCACACAACCG 2443 37 100.0 40 ..................................... ATCGCCATGCCATGAGCCTAAACCAACGCGTCATGGCGTT 2520 37 100.0 38 ..................................... CTGCTCTTGCGTCATATTGATCATCGAGTTGGCCCAGT 2595 37 100.0 41 ..................................... GGGCACTTGACGGGCTCGAGCTGATGACGACCGAAACCGAA 2673 37 100.0 37 ..................................... GACTTTCTGGGGAATCTCCTTGTATTCCCCCGCGTAG 2747 37 100.0 36 ..................................... ACCCGCGCGCGCGGAACCAGTCAACATAGCGGATGT 2820 37 100.0 36 ..................................... GCAAATTGCCTAGGCTCACCAAGGCCATGGCCAAGG 2893 37 100.0 39 ..................................... CTGACCACGTGGAGAGAGCCCCTTGTCTGGCCAGACCCA 2969 37 100.0 38 ..................................... GACCGGCCTGGGTGAGCCGGTCCGCCATCGCCTGTTCG 3044 37 100.0 41 ..................................... TGACCCACCTGGTCTCTGTTACATAGTCGCCACCGGAGAGG 3122 37 100.0 38 ..................................... TTTCTCGGCCCAGAGGCCGTTGCCCTGGGCCTCAGCCC 3197 37 100.0 38 ..................................... GGACTGGGTTGAAAGACGGAATGTCCCAACCGTCTGTC 3272 37 100.0 41 ..................................... CACCGCGGATCTCCATCTTCTCCACCTTAATCAGAGCAACC 3350 37 100.0 39 ..................................... TCCAGGCCGTACTCGTAAACCGTGCCATCCCGGAACCTC 3426 37 100.0 38 ..................................... ATGTTGAAGACTATCCACCAGGGGATAACGGGCCTGGT 3501 37 100.0 37 ..................................... AAGTACTGGCGGCCGTGATCTACACCACCCCGCACCC 3575 37 100.0 41 ..................................... GCGGGGGGACTGGACTCCAGCCACGTAATCGGGCGTGGCCT 3653 37 100.0 39 ..................................... CGGCCCCATGGCCACCAGATTCTCTACACCCCGCAACAC 3729 37 100.0 41 ..................................... CCCGAGTCAGTGCATCCCCGGTAATCGCAGCGGGGCTTGGG 3807 37 100.0 37 ..................................... TCCAATGCTTATGGTTGAGGGTTACAACGCGACAACA 3881 37 100.0 38 ..................................... TTGTCATAGCACCTTAAGTAATAGCAGTCTGAATGCCA 3956 37 100.0 40 ..................................... AACCTTGTAACGTGCTAGGATATTACCTTGGCCAATGCCG 4033 37 100.0 40 ..................................... CAAGCCGACACAACCAAAGACAATGGCCAAGACAAGCCAG 4110 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 55 37 100.0 38 GTCGGAACCCCACAAACCGCCGAAAGGCATTGGTGAC # Left flank : AGGGGTTGCCGGTCCTCCCTGTACAGAACCATTTCG # Right flank : TCATAACGAGACGCGAACTTCCTTGCCCGACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACCCCACAAACCGCCGAAAGGCATTGGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 41442-37208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYA010000064.1 Limisphaera ngatamarikiensis strain NGM72.4 VerNGM_NODE_135_len_41404_cov_39_358807.65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================================================================================================================================================== ================== 41441 37 100.0 36 ..................................... CGGTCGTCTTCCGGGTCATCTGACCAAGGCAGCAGC 41368 37 100.0 35 ..................................... AGGGTCCCAATAAGGACCCACCCGTGGGAATCCCG 41296 37 100.0 37 ..................................... GCTCCCCCGACCACCGGCCTTCTGCCGTTGGCACCTT 41222 37 100.0 36 ..................................... CCGTCGAACAACATCCTGCAGATCTCCTTCTTCATA 41149 37 100.0 39 ..................................... CAAGCTCCGGGCGCAATTCCTCAACGCCACGGCGCGCAG 41073 37 100.0 42 ..................................... CAGCCGGTCTGCTGTTCCAGTACCGCCACATATCCGGGGTCG 40994 37 100.0 37 ..................................... AGGTTAATGCATCCACCCCAGACCTCAACGCCCGGGG 40920 37 100.0 40 ..................................... GGGAGGCTGCTGGGCGGATGACACCAGCGGAGTACATTGC 40843 37 100.0 39 ..................................... ACCCCGATTCTCCCAGGTTAATGCATCCACCCCAGACCT 40767 37 97.3 41 ...........................A......... GCCCGATTCTCCCAGGTTAATGCATCCACCCCAGACCTCAA 40689 37 100.0 39 ..................................... CGGTGTTGGTGGCCAGGTCTGTCATGCCGGCCTCAAAGG 40613 37 100.0 41 ..................................... TGGTGACAATCATGCGAACCTCCTCAAAGCCTGAATCACGT 40535 37 100.0 37 ..................................... AGGTTAATGCATCCACCCCAGACCTCAACGCCCGGGG 40461 37 100.0 40 ..................................... CTGGCCCGTAGGAGCCGCCGCTGGATATAAGACACGACGG 40384 37 100.0 41 ..................................... ACGGTAGTCGGTCAGGATTTGCTCCGCAGCCCTCCTGTGGA 40306 37 100.0 38 ..................................... TCGTGGCGGCGATGCCCCCTTCAGCGGGGGCAAGGATG 40231 37 100.0 38 ..................................... ACCGGACGACTGAGAGCCCCAGGACCGCATTGGTGCGG 40156 37 100.0 39 ..................................... TCCGACCCTCCGGGGGGCTCCCCCGACCACCGGCCTTCT 40080 37 100.0 36 ..................................... TTGTCATAGCACCTTAAGTAATAGCAGTCTGAATGC 40007 37 100.0 35 ..................................... TTAGGGCCGTCGAACAACATCCTGCAGATCTCCTT 39935 37 100.0 37 ..................................... GTGTCGAGGGCTTGGATGTTTAGTGGCCCACCGGGTG 39861 37 100.0 40 ..................................... GTTAGTGCCTTAGTCTCAAGTTAAACTGTCTTGGGACGCA 39784 37 100.0 38 ..................................... AATTCGTAACCACGGTAACATTCGTATTACACCCCCCA 39709 37 100.0 37 ..................................... CTGTGTCCAATCCAACTGAGCCGTAAACGACCCCGTA 39635 37 100.0 35 ..................................... ATTCGTAACCACGGTAACATTCGTATTACACCCCC 39563 37 100.0 37 ..................................... AACGACCCCGTAAGGGTAAGATCAACATTCACCACAA 39489 37 100.0 34 ..................................... GTCCCCATGACAGTTTGACCCGCAGTCCGACCCT 39418 37 100.0 36 ..................................... GTCGCCCCAACCTTAACAGGGTCCGCGTGGTACCGT 39345 37 100.0 35 ..................................... AAGAATGCCCAACATACTCCATCCTCCATCAACCG 39273 37 100.0 36 ..................................... GGCACTCTCTCAACTGCCTTTCGGCACCAATCGCGA 39200 37 100.0 37 ..................................... CACGACCGCACACACTTTTCTACCGCAACCACCAAAT 39126 37 100.0 36 ..................................... GCAACCAAAAGGAACGCACTTCATCATCAGGCAAAC 39053 37 100.0 39 ..................................... ACCGGCCTCCACAACAACAGTCCCATGACCCCAGCAATC 38977 37 100.0 37 ..................................... AACCCCGCCTCCGTGGGCGCACCAACGCGCAGTCGGC 38903 37 100.0 36 ..................................... CGGCAGGGGCGCCCAGCATCGTTATCGACCAATCGC 38830 37 100.0 38 ..................................... GTCGTCTTCACGGGCGACGATTTTGTATCCATCTCGGA 38755 37 100.0 38 ..................................... ATATGCTCCCCTTGGTTTTCCCCGGGGCATGACGCCCC 38680 37 100.0 41 ..................................... CTCGGAGGCCCGGGTGATCACTACGACGACGGATCGAATCC 38602 37 100.0 42 ..................................... AGCAAACCGGCACCCGAACGGAGCCGGACCGATGAAATAGGA 38523 37 100.0 38 ..................................... GTTCAAACGCCGCCCGAAGCCCCGCCTTTACGGCGGGG 38448 37 100.0 36 ..................................... TAGTGACTTACTTAACCTCGTATCCGGTCTGGACGA 38375 37 100.0 36 ..................................... CCGGCCGGTCAGGGTACCAATCAACACCCACCCGTG 38302 37 100.0 39 ..................................... ACCTGGCCCGAGGGCGGGAGCTCCCGGGCCGTACCGGTC 38226 37 100.0 39 ..................................... GCCAAGGCCTTGGTCAACCCGGTCATGGCCTAGGCCAAG 38150 37 100.0 40 ..................................... TGGGGCTTTGGCGGAACGGCGTGCAGATCCCACGGGAGGC 38073 37 100.0 37 ..................................... GGCACGATTCTCGCTAGAGGTTGGTGCGATGCCAACC 37999 37 100.0 40 ..................................... ATTATCGCGATGTCGTGTTGGTTGACCAGGCGGGCCCAGG 37922 37 100.0 39 ..................................... GAGGCACCCAGTCTCCTTGGTGCCGGTGAGCTCCAGCAG 37846 37 100.0 39 ..................................... CACACAATGGCGACCGGAGCCATCGAGGCCTGAGGATAG 37770 37 100.0 39 ..................................... GCTGCGGTAGGCTCGGGACGTAACCCGGATCGTGCCGTT 37694 37 97.3 38 .................................C... TTGATCGCGACCTGCGCGATCTACGGGATCTTCCGCCG 37619 37 73.0 34 ...A...GG.AG..C.TG..G........C....... CTGTACGCGGCGGCAGGGCAGAACGTACCGTCCT 37548 37 81.1 191 .C............C..T.............C.AC.G ATACTCCCTGGGCACCAATCCCGGGATATCTTAGCAATGGAGCCCGCGCTCCGAGCGCCGAAAGGAGACGACAGCCGTGGGGCAGACAATCATGTCTGCCGGGATCAGGCTGTGTCGTGAAGTTGCGTCGCGCCCAGAGGGGATGAGGGTTTTGCCGCAGGCATGATTGCCTGCGCCACGGCTTCTCTACG A,C [37513,37516] 37318 36 78.4 38 A.GC......TC.....-..........C...A.... CAGGCTCGCGCGTGGCAAATGACCTCCTCGCGCAGGCG 37244 37 89.2 0 .............G......T..........A.A... | ========== ====== ====== ====== ===================================== =============================================================================================================================================================================================== ================== 55 37 98.5 41 GTCGGAACCCCACAAACCGCCGAAAGGCATTGGTGAC # Left flank : AATGGTTGCACGTTCCACTCATCTCCTTTGGTCA # Right flank : CGTTCCACCCACTTTTAGATATCGACCGCACCCGAGACCGGCGCACGGCCACGCGCCGCCCAAAGATTACCGAACCAGCCCGTCCTCAAGCACTTGAAGGTTTCCATTGCGACCAGGCGCGAATAGGCACCCAAAACACGGTGGCTGCAGGACCTTGTTACGGTTCGGACATTGTAGGGAAACCAGGTAATGTGCTGTACAAAGCGAGCCCCCGGCGACACCGACGGGCCCAACCAGGAAGATGCTAATTATTAAAGCACAGGGAACACAAGACGCGGAGGCTGGCGTTGATTAGAGCCGCATGTCTCAAACCGACCATGTGCGTATGCCTGGGCTATTAGGCACATCGCCGGATGCCCTGCCCCCTGCGAATGGCAGCACTTCAGCGGCCCCACGGCGCCAGCCGATTCATCACAAGCTGCCGGCCGGCAGCTGTGAAGCTGCAGACACAGGGGTCCGTCGCCCTCCCTGTCCCGGGGCATCAGCAGCAATCCCCCGGG # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACCCCACAAACCGCCGAAAGGCATTGGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [32-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 74802-75555 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYA010000006.1 Limisphaera ngatamarikiensis strain NGM72.4 VerNGM_NODE_7_len_187884_cov_42_882458.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 74802 37 100.0 35 ..................................... TAACCTGGAGGAGCTGCAGCAGCGGCTACGGTCCG 74874 37 100.0 35 ..................................... CAAAGACATCGCATCGGATGATGCAGGACACGCCA 74946 37 100.0 35 ..................................... GGGAAAATCGGGCTGATCGTGGACTGGAAGACCGG 75018 37 100.0 34 ..................................... GCGAGCCGTGCCGCCTCCTTCCGCGCCTCGGCAA 75089 37 100.0 34 ..................................... GATGGAAACCTCGGGGATTACGCTCGGTGGAACG 75160 37 100.0 35 ..................................... AAAGGTCCGTCAGTGAATCAACCGGAGCCGATTGG 75232 37 100.0 35 ..................................... TTCGGAAGGAGAGTGGAGGTACGTGGTCGGAGTTC 75304 37 100.0 34 ..................................... ACTGGTTGCCGGGCCCTAGTCGTGGGCCCTGATG 75375 37 97.3 33 ...A................................. CGTGGTGACGATGATTCCGGCACCCGCAGCCAC 75445 37 100.0 35 ..................................... ATTTGTGGAATCGTCACCGGATCGCGAATCACAAA 75517 37 97.3 0 ....................................T | GC [75550] ========== ====== ====== ====== ===================================== =================================== ================== 11 37 99.5 35 GTCGCCGCGCGTTTCGGCGCGCGGCGCGGATTGAAAC # Left flank : ACCGCCATGCTCATCCTGATTACCTATGATGTCTCCACCACGGAAAAGGCAGGCCGGTGCCGCCTTCGTCGTGTCGCTCGCGCCTGCCAGGATTACGGCGTCAGGGTGCAAAAGAGCGTGTTCGAATGCACGGTCGGCCCCAAAGAGTGGGTCCAACTGCGCGCTCGGCTGCTTAAGGAGATCAAGCACGACGAGGATTCCCTCCGGTTCTATTTTCTCGACCAGGCCGCCCTTCAACGCATTGAACACCACGGCGTGGGCAAACCCCTGGACTTGACTGAACCGCTGGTGTTGTGAACCGCGGAATCCAGAGCGTGCATCCTATCCCTGCGGCGCGAACCGCAAGCGCCGACCTGTGCCTGAGAGTTCCGCGGCTGCCCCCGATGCGAGTGTTTGCCACGTTCTTTGACAAGGTTGAGCATTTGGGCGCTGAGGAGAGTTGGCAGGTTCGCGGAAACCAAGTACAAACTAATTGGCATGTAGCAACTTAGGCATGCCGC # Right flank : TGTCAGTGCCCGTGCCCCGGATCCGGGTTCCCGGCCTGAGTCGGTGAGCGCGGCGCCCTTGCAACGAGGTCACATTGGTCCGGTCACGTGGAACCTTTGGGTTGCTGGGAGCGTTGGCGATTGCCGGTACTCTTTCGCAGCGCCGCTGTGTGCGGGATCCGTACGATGTGCGGGGCATTCCGTGTCGCCCCGGCGGCAGGGTGGGGGGATGCGACGGTGTACGCCCGGGGTGTCCCGGCTTGAGTTGCCGGGCCTTGTGGGATGAAGAAGCTGGGGCACTTGGGTTTTTGGGTGTTGGCGGACGGCTTGGCGCGGCGTTTTCGTCGTGTAGCGACGTTTTTTGCTTTCGTGAAGCGTCCCGACGATGGCGGTCGGCTTGGATGGTGTAAGGCGCCAAGGGACCGCCATTGCATCGGGCGCTTGGGGGTGAAGGGATCGGCGGCCCTGGGTTTCTCCGGGTCCGGTTGGCCAACTTCGGACCGGGTGAGGCTCGGGAATCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCGCGCGTTTCGGCGCGCGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.50,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 362311-360081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYA010000053.1 Limisphaera ngatamarikiensis strain NGM72.4 VerNGM_NODE_92_len_362275_cov_49_059826.54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 362310 35 100.0 37 ................................... CGCTTGCGTGGTGCATCGGCCGTCCGTAGCCGCCACA 362238 35 100.0 38 ................................... CTGAAGCGTGAATGGAATCATTTGCGTCAGGCATTCCA 362165 35 100.0 38 ................................... ATCTGGATCGGGGGGATTGGGCGGGGCCGGCAATTGAA 362092 35 100.0 37 ................................... ACCTGCAGCGCTGCCAGATCGAATGCCATGCGTCTCG 362020 35 100.0 37 ................................... CTTTCGACGAATTGATGCGGCGGCTCGAGGACTTCGA 361948 35 100.0 39 ................................... GCTTCGTTTCGACCGCTGATCATTGCGCATGGGGTGAGA 361874 35 100.0 37 ................................... CTTTCGACGAATTGATGCGGCGGCTCGAGGACTTCGA 361802 35 100.0 37 ................................... GGGTTGCGGGGGCTCTGCCCCCGTGCCCCCGGACCGG 361730 35 100.0 40 ................................... ACGCTCGAATGCCACGGAAGGCAACGGCTTCCATTCTGGG 361655 35 100.0 38 ................................... TTCACAATGCCAAGATTTGGCATGGGTCTAGCTATAGG 361582 35 100.0 39 ................................... CAGTCCACGATCAACCCGACCTTCCCGACGCGCATGTAG 361508 35 100.0 37 ................................... CCGGTGTTCATCACCTTGACGCGGGCGACCAGCAGGA 361436 35 100.0 37 ................................... GGCCTTTGGCGAGTTCGTCCATGATGCTTTGGGCTGA 361364 35 100.0 37 ................................... ATCGGTTTGGGCCAGGCGCCCCATGAAGGCAAACCAA 361292 35 100.0 40 ................................... ACAGCCGTCTGGCCACCGAACTGCACGATCGACGGCAGCA 361217 35 100.0 38 ................................... ATTTTCTCCCAAGCTTGGCAAACTTTAAGCTATAGCTA 361144 35 100.0 39 ................................... AGCTCTGGCGCGGGCCCAAGGCCTCAGACGTCGTGATCG 361070 35 100.0 39 ................................... GTTCCATGCCCGCTCTGCAACCCGCACGCTGACGACAAG 360996 35 100.0 40 ................................... TGACAACTTTTCTCTCCGAGCTTGGCAAGATTTTAGCTAG 360921 35 100.0 37 ................................... GGCATTGTTTAAGCTATAGCTTAAATCTTGCCAATCG 360849 35 100.0 38 ................................... CCGTCTAAACTCTTGCGCCAAATAATGGTCTTGTTCCG 360776 35 100.0 38 ................................... CGACCGCAGACGTGCCGGTCATGCCGCCAGATGACCTG 360703 35 100.0 37 ................................... ACTGCGGGAATGAAGTGGGTGTAGTAGAAGCCATCGG 360631 35 100.0 36 ................................... TACGGGGGAACGGTGTAGACTGTTTCGGCGTCTGTG 360560 35 100.0 41 ................................... CTGTGGATCGGGATTGCGCTTGGGATCGGGGGCGGGGTGCA 360484 35 100.0 39 ................................... GCCACGGCGCACGGCTCCGGCCGGGTGTTCTGCCACTTA 360410 35 100.0 39 ................................... CGCCATCGTGGCCGACCTGATCGACCAGGGGGTGAAGGG 360336 35 97.1 39 ......................C............ AACCGGTAAGGGCGGCCGATGTGGGGAGTGGCGGCGGTG 360262 35 100.0 39 ................................... AGCATCCCTGCAATCGCAAAAGAGCTTGCCAAAAATGAA 360188 35 97.1 38 ......T............................ GGACCTCACCCACCGGGTCAGCCACCCATCGCAGGAAA 360115 35 88.6 0 ......................A.G.....CC... | ========== ====== ====== ====== =================================== ========================================= ================== 31 35 99.4 38 TCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGC # Left flank : CTAGGCTCACCAAGGCCATGGCCAAGGCCGTGGCCA # Right flank : TGCCGTTCAACAGTTTCTTGCTCGGCCCGTCGCTGAAGCACTGCACACACCAGGTGGTTCACTGGTTATCTGTCGACTTTTCTGACTCTCCCCCATGCCAATAGCGCCGCGGGTCGTTAGCCGCCCATCACGGCCCTCGTACAGCAGTTAGGACGCTTCCCCAGGTGCCTCTCCGGACCTCCCTGTTGCGCCTTCCGATCCCATACGCTCGGCATGGCCGCCCGGCGGGCCGACCACCGTTGGCAACTCGGGCCGACCAATGGTTTGCCGGTCAGTCCCCGGGCCTCATGGGACCCGGGATCACTGCACTGGCCGATCGGGCGGGGATGTACAACACAAAGGTCGCTGAAAGCGATGGACAGACACTGCGCTCGTACCTTTGGCTCTCCGCAGTGGCCACCACCGTGTCCATTCCATGAGCATGCGCACTCGGGACTCCCTATTGCGACTGCGGCGCCACTGGAATGGCAACCGTGTGAGATCGCTGCGCTGTCCGGCAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.70,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 37-1026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYA010000054.1 Limisphaera ngatamarikiensis strain NGM72.4 VerNGM_NODE_94_len_989_cov_46_206268.55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 37 35 100.0 38 ................................... CCATGCTTCTCCGCTCCCATCGTCGAGCATTGTAACGG 110 35 100.0 40 ................................... GGACCGTCAGACAAGTATTATTTGCAGAGAATCGCGTACG 185 35 100.0 40 ................................... GACGTGTTAGACTAGAGCAAAACCGGTCATGGCAAAATCG 260 35 100.0 37 ................................... GTCATGGCGCCACGCTATACGCTTTCGCCAGATCCGA 332 35 100.0 38 ................................... CCGTTCATCCCGGACACGAGCCCCAGCATTGAGGGGAG 405 35 100.0 38 ................................... CGTCCGCCCGGACTGCTGCAATGTTCGCCGTCTTTTCA 478 35 100.0 37 ................................... CTTTCGACGAATTGATGCGGCGGCTCGAGGACTTCGA 550 35 100.0 39 ................................... GCTTCGTTTCGACCGCTGATCATTGCGCATGGGGTGAGA 624 35 100.0 38 ................................... CGTTAATGGACCGCAACCATTGCGCGTCGGTAACCCAA 697 35 100.0 38 ................................... GCGTCAGACGAACATGTCGGCGTCAAAGCAGTCCCAAG 770 35 100.0 40 ................................... CCGGGTGGCGTCGATCGAGCTGAAGAAGCGTCTCGATCGG 845 35 100.0 39 ................................... CCAACGCCTCCAGCAATCGATCGCTCCGGGTCCACAGCA 919 35 100.0 38 ................................... CAGGGGAGCGGGTATCGGGTTCCGCAGTTGGTGCAGAA 992 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 14 35 100.0 39 TCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGC # Left flank : CCTGCAGCGCTGCCAGATCGAATGCCATGCGTCTCGT # Right flank : GGCCTTTGGCGAGTTCGTCCATGATGCTTTGGGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 596-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYA010000056.1 Limisphaera ngatamarikiensis strain NGM72.4 VerNGM_NODE_96_len_558_cov_23_465950.57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 595 37 100.0 38 ..................................... GCACGACAAAATGGCCTCGGTCACCGTTGGGACGGTGG 520 37 100.0 38 ..................................... GATCATCACCTGAATCGGGGTTGGGTTGGGACGGACGA 445 37 100.0 39 ..................................... CCCCTGACGGATCGACACCCTCCAAAGCACGCAAAGGTG 369 37 100.0 38 ..................................... CTTGGGCGGGCTCCATCGGCCCGCCAGTTCGACGATCT 294 37 100.0 37 ..................................... GGTCCGAACGACCAAGCTGATCTCCCCGGAGAACCGG 220 37 100.0 37 ..................................... GCAACGGACCGCCTCGAAATCATACCCCTGACGGATG 146 37 100.0 37 ..................................... AAGACGTACCGGATGTCTCCGATCCGAATAGACATGA 72 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 100.0 38 GTCGGAACCCCACAAACCGCCGAAAGGCATTGGTGAC # Left flank : CAAACGCCGCCCGAAGCCCCGCCTTTACGGCGGG # Right flank : CAGCAAACCGGCACCCGAACGGAGCCGGACCGATGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACCCCACAAACCGCCGAAAGGCATTGGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [20.0-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 4674-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYA010000023.1 Limisphaera ngatamarikiensis strain NGM72.4 VerNGM_NODE_35_len_105744_cov_44_967384.24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 4673 36 100.0 36 .................................... CGCCGGCGGCTCCTCCACTACTCGATACTCCTCCAC 4601 36 100.0 36 .................................... AAGCCGTGCAGGCTTGACATTCCGGGCCATGACGGC 4529 36 100.0 38 .................................... GGTGTAGGAGGGAACCATGGACTCGAACCTGACGAAAT 4455 36 100.0 38 .................................... GAGACGTCTTCAGGGTGTTATCAGCCTCCCTTAACGTT 4381 36 100.0 35 .................................... TTGAGTTTGACCGGGATCGACCCGGTCTCATCCTT 4310 36 100.0 39 .................................... GTCGGCTCAATCCTCGAACAGGCGCCCAAGGTGGTGCTG 4235 36 100.0 37 .................................... TTGAACCCGACCCCGTTGATCACCCGGGCCCCATCCG 4162 36 100.0 36 .................................... AAGAGATCGAGAAGATAGCCCGGGCGGTCGCCGCTG 4090 36 100.0 38 .................................... AATTCCACCAGCGCCTTGGGGATCAGAGGTGCCGCCGA 4016 36 100.0 39 .................................... CCGGCACCGTGACCCTCTCTGTTGACGGTGTGGCGCTTG 3941 36 100.0 36 .................................... GGGCAAACACACAACAAAGCTTAACACACACAACAC 3869 36 100.0 36 .................................... TGTGTTGCGTGCAAAGTTTTGTTGTGTGTTGCGTTG 3797 36 100.0 37 .................................... GATGCAATCCATCCGCCCCGGTGTGTTCCACCATTCA 3724 36 100.0 39 .................................... AGCACGCAACCATTGCCAACGCAACAAAAATTTTCACAA 3649 36 100.0 38 .................................... GACGCCAAGCCAGTATTGTCTGGCTTGGTTTTAGCTGG 3575 36 100.0 38 .................................... CCGACCCACCAAACATTCACCCTCCCGAACGCACACAT 3501 36 100.0 36 .................................... CCTGCGCAAAGTAAGACAGGAAATCGAGCAGCTGGC 3429 36 100.0 36 .................................... AGTAATCAGCACCACCGAATCTCCCAGCTTACGGTG 3357 36 100.0 37 .................................... GTGATTGAGGGGAAGATGGCGCGCCAGATTTCGTCGG 3284 36 100.0 39 .................................... GCGTTGCCATCGCCCTTCTTCCGTAGAAGCACCCAACGC 3209 36 100.0 35 .................................... GAAACGCCGACCATGCCGAGGAGGATGCAATTCTG 3138 36 100.0 35 .................................... GCCAAGCTTGGGAGAAAATAAATTTTGCATTATGG 3067 36 100.0 36 .................................... TGAGTTTTTGCCTGCCAAATTGCCTCGCCTTCTGGT 2995 36 100.0 38 .................................... TTGTGAATGAGGCGCCGCCGGAATCACAAGCCAGTCTG 2921 36 100.0 37 .................................... TTTGCAATCATCAAGGCTGGGTGATGATCGACCTCGA 2848 36 100.0 39 .................................... AACGCGGATGATCCGCTGAGTATGCTGTAGCCGATTGTG 2773 36 100.0 38 .................................... AAAGGTTGCCCCGGTGAGTCTGTCCAAAGCCTCCCGGT 2699 36 100.0 36 .................................... AGATTCAAGAATTGTGCCAATATTTGAGCATTGCCG 2627 36 100.0 35 .................................... TTCCGCGCCACCGCCAGCAGGGCACGGAATCGTTG 2556 36 100.0 36 .................................... CATTGCTCTCAGGAGCTGCCAGATTTGCCGCAATGG 2484 36 100.0 37 .................................... GGATTGACCACTCGCCATACTTGTTGGTTCCGGTTCG 2411 36 100.0 41 .................................... CATGACGCCCTCAAGCGTAACCAGCGTCCACTTCCAGATTG 2334 36 100.0 38 .................................... GTCTATTTCCCGCCCCACCAGTCCCACCAGCCGACCCG 2260 36 100.0 36 .................................... CAGGATTATTGAAGGGACGCGCCTTGGGCGGCTTTG 2188 36 100.0 37 .................................... GCACGCCTTTCCGACCGCTTGCGCCGCCTTACGACAA 2115 36 100.0 36 .................................... CGAGCCGCACGCCACCCCGCCCCGCCCCGACCACCA 2043 36 100.0 35 .................................... CCAGCTGGCTTCTGCGGCTGTGGTGGCTTGGGCCC 1972 36 100.0 37 .................................... TTGCTCTGAGTGTAGTCTGGCCGGCTGGGTTTGGCAA 1899 36 100.0 37 .................................... GGGTTGACCGCGCGATAGTCGCCACTCATCACGGCCT 1826 36 100.0 37 .................................... CAACGCCGGAGCTGGAGGTGGAGTTTCACCCGGACCG 1753 36 100.0 37 .................................... TTCTTCAGCTCGATCCAGGTCGTGTAATAGGTGTTCA 1680 36 100.0 36 .................................... GTCCGAAGCGTGAACGAAGGCAAGCTGACCCGGGCC 1608 36 100.0 35 .................................... TGTTAGCCGCGGATCCGCAAGGTGTGGATCCCCCG 1537 36 100.0 38 .................................... CTCCGCTTGGAGGAAGAGGGGGATCGCGGAACCGGGGG 1463 36 100.0 38 .................................... GGAACATGGAGCGTGAGCCGTTGGCGGGAGTTCGTGTG 1389 36 100.0 38 .................................... CGACTGTCGAACGCCACCAGTTACGGGGAGCCGTGGCT 1315 36 100.0 37 .................................... GTGTACAGGATGCGTAGCCCTACTGGTGGGGTCCAGG 1242 36 100.0 36 .................................... GTTGGGACGCAACGGTAACCCCCGCCGGGGTGCCTC 1170 36 100.0 38 .................................... TGGTGGGACGTAGCGGAATTCTGTGCCGTTGCATACCT 1096 36 100.0 35 .................................... TGCGAAGATTTTTGCGTGAAAATTTGGCACAAAAT 1025 36 100.0 35 .................................... GGCTAGCAAATAGCCGTGCAAATCATCAAATCCGA 954 36 100.0 39 .................................... GTAAACTGCAAGACTCGAGTTCAGTACCTCCTGGATCTC 879 36 100.0 39 .................................... GATGTCTGTAAGGTACAACACCAAGGGAGGATTCATCGC 804 36 100.0 36 .................................... GCAAGCTTGTTGTGTGTGTTGGCAAGTTTTGCGCAT 732 36 100.0 37 .................................... AACGATCGCTGAGGCGAAAAAATCTCCGCGTAAATCT 659 36 100.0 36 .................................... GGGTTGAGCCGCACGAATGGCAACATGCTCTTTGTC 587 36 100.0 38 .................................... GAGAAGGAGCCCAAAGTGGCGGTGGTGGATGGAGCCAA 513 36 100.0 35 .................................... CGTGGAGAAATGGGTGAAGTCACCCCTGGGCAAAA 442 36 100.0 40 .................................... CGGGAAGAACCGCCTGTATCCGTCCTTTGCAGCAAGGCCC 366 36 97.2 37 A................................... CTCCTCATCCACTGACGGCCCTCCTCTGTTTCGGCCC 293 36 97.2 38 A................................... CAGTCTCGCTCGTCTATCGTTTCACCCAGGAACTCTTC 219 36 97.2 38 A................................... GATGGATTGCAAGGGAAAAAATTTGAAAAAAGTTATTC 145 36 97.2 38 A................................... CTCTAGGTGAACCCGCACAGAATCAACCGCCGCTCCAA 71 36 97.2 0 A................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 64 36 99.8 37 GTCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGC # Left flank : TTGTGTCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGCAAGCGCAGGATGGCCGGGCAATCGCGCCAGGAGCTCGTCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGCTATTGGGGGCGAAGAAGGAAGGCCGCCCACCGTTGAGTGTCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGCGGGGAGGTGATCCAAAAGGTCTCCAATCAAACCGCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAATTCCCCGAGCTCGGGTCCCGTCGCACCTG # Right flank : CGGCCTTTGGCGAGTTCGTCCATGATGCTTTGGGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.70,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 17265-4988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKYA010000023.1 Limisphaera ngatamarikiensis strain NGM72.4 VerNGM_NODE_35_len_105744_cov_44_967384.24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 17264 36 100.0 35 .................................... AGCCTGCCAGCAATTGCAAAAGCACTTGCAAAACA 17193 36 100.0 37 .................................... CAGGATGAGATGCTGGGCCCTGGAAGAGCGGAGTTGT 17120 36 100.0 38 .................................... CAGGGGCATCATGGGCATGCTGCTCGACGCCTGGGCCA 17046 36 100.0 36 .................................... GTCCCCGTGGCGTTCGTCGAATCCAACGCCACCGCC 16974 36 100.0 37 .................................... AAGGAGGTCGCCATGTCAGTCACACTCCGTCCCGCCG 16901 36 100.0 36 .................................... GTCGGAAAGCGCCACCTACAAAACCGAGGACGATCA 16829 36 100.0 38 .................................... TTTGTGTGTGCATTTATATGTTGCCACAACCTAGCAAC 16755 36 100.0 37 .................................... CACTCACAATCGTCGCACAACACGAACGCCACGCAAG 16682 36 100.0 38 .................................... CGATTACATGGATGGCATATCGGTCTTGGCTGAGGTCT 16608 36 100.0 38 .................................... TCATGGTTCATCAATTCCACACAAACCACCATTTGCGG 16534 36 100.0 41 .................................... CTGAATGACGTGTTCGCAGCGTTCTTCGCGGAACGCATGGA 16457 36 100.0 38 .................................... AAGTTCATGAAGTGTTACGTCTCCGTTTGGCCAGAGCG 16383 36 100.0 37 .................................... TGGACATTGCCAAACTGCGCAAAAATTGCATAGGTGC 16310 36 100.0 37 .................................... GAGACATGTCCCCCACCCGGCAAATCTTGCCGGTCGG 16237 36 100.0 36 .................................... GGAACGGTGGTGGAGATTGAAGGGGTAGGACGAAGA 16165 36 100.0 38 .................................... GCAGCATCCAAAGCTTTCGCCCTCGCGGATGCAATTGT 16091 36 100.0 38 .................................... TTTGGCAAGCGTCAATTTTTGAGCCAGTACCAAGTAGA 16017 36 100.0 37 .................................... GCCAGATGCGTTTCGATCGCCTTTTTGACGGATTCAA 15944 36 100.0 39 .................................... GTCGAACAGTTGATCGGCTCAAAGACGCTCCCGGGGGTG 15869 36 100.0 37 .................................... TCGGTCAGCACGTCACCCTCTACATCCGCCGGGACTT 15796 36 100.0 36 .................................... AACTCGTTCGCAACGCATTGGTTGCGGCGCCGTGCG 15724 36 100.0 37 .................................... GTGGATGCCGATTTCCGGGAGCTGGTGGGACTGCTGC 15651 36 100.0 39 .................................... GTGGGAAGGCTCGGGAGTTCCGGGCGTGCGTGTCGGAGG 15576 36 100.0 37 .................................... TGCTTCGACTTGACCTGCTCGGCCACGTAGGCTGCGG 15503 36 100.0 37 .................................... AGGATGTTGCCCCTGGTGCGGGACGACTACGTGTTGG 15430 36 100.0 35 .................................... GAGACGCCCCACGTAAACCAATCGACGACCGTCCC 15359 36 100.0 38 .................................... TATTTTTGGCTCCCAATTATGTGTCTGACGACAGGCCA 15285 36 100.0 38 .................................... ACTGATCTTCATCTCACTACCTCCACGGCCCACCCCGG 15211 36 100.0 37 .................................... TTGGTTTGCTCCCCGCCCCTTGCCATTAGGCCGGCCC 15138 36 100.0 37 .................................... CGAGGAGGAAGTCTTGGACGGAGACGCTCTTGGGATT 15065 36 100.0 38 .................................... CTTTCAGTCCAGTGATCTTGTACTTGGGATCCCCGTAG 14991 36 100.0 38 .................................... TCATGGCTCCGAGATCAATCGTCCTGCAATCACAGTGT 14917 36 100.0 40 .................................... GGAGGGGCCGGTGTCCGTCTCATATCCGGGGTGCGTTTAT 14841 36 100.0 36 .................................... AACCACCTTCTCCGGCAGTCTGTCGCACCTCTTTAT 14769 36 100.0 38 .................................... ATGCCAGCGCCCTGCAGGTAAAGATCGAGATTTCGCAA 14695 36 100.0 36 .................................... AGGCGCAGCTGCTGGACAACCAGACGCTGTTGCGCG 14623 36 100.0 38 .................................... CGTTTTGGTTGACGCGGACATGGTAGGCGACCGGTTGC 14549 36 100.0 39 .................................... TGCGCTCTGACCAGCGTGCCCTGCGTATCCTCCCCAATC 14474 36 100.0 36 .................................... GACAGATCATCCTCCATCCGCCGTAAAACGACGCGA 14402 36 100.0 41 .................................... CGTGCGGATCCGCCCGGGCAGGGGCTGTCCTCGCTGACCCT 14325 36 100.0 37 .................................... GCGGTGGGGCACGTAGAGGCTCGGCAAGTGGTACCCT 14252 36 100.0 38 .................................... CGGGGCCGGCGATGTTGGTGGGGCAGGTCATACCGACC 14178 36 100.0 36 .................................... ATATAGTTTCCGCTCTGGTCCGGACTGCGTGTCCGG 14106 36 100.0 36 .................................... GTCTTTACGCACGCACGCAATCCGTATATTGTGAGC 14034 36 100.0 37 .................................... GTATTGGGGGTATTGTTGGGGGTTCTAGCATGGCAAC 13961 36 100.0 38 .................................... TGGCCAAGCAATAATCCCAGACAACATAGCTGACCAAT 13887 36 100.0 36 .................................... CGTAATAGCAGATTGGAAGGATATCTTCTGGAGTAT 13815 36 100.0 38 .................................... TGCGTGGGCCCACCGGGCCCTGAAACGCCTCGCGGAGG 13741 36 100.0 38 .................................... GCGGCGTTGGTGTTCGGTGTGCCGTGGTTGGTCGGGTG 13667 36 100.0 38 .................................... AGAAGCCTGGGCGGGACAGAGGGGGCGGGGAAGCGACT 13593 36 100.0 39 .................................... GTGCCGGGTGTTCTTGCTGCTCGTGCGTGGATTGTGTCC 13518 36 100.0 39 .................................... CTACTGTTGCGTTGGATTGTGTGGTTGTTGGTGGGACGC 13443 36 100.0 37 .................................... CGTGCTCCGGGTGGTGGTGCTATCGGTGGCGTATGCG 13370 36 100.0 37 .................................... GCGATGGTGCGTTTCTGTTGGGGCGCAAAATTGTTGT 13297 36 100.0 41 .................................... CCGGTGTGTTGGCGGGGCGGGCGTGGTTGGTAGCGGTGGGG 13220 36 100.0 37 .................................... ATGTTTCGCACGACTCTGGCAGCCGGCGATGGGAGAT 13147 36 100.0 41 .................................... CGGGGTTCTTGGGGCTCGTGCGTGGATTGTTTCCGCGGGGT 13070 36 100.0 36 .................................... TCTTGCGATCCGTATGAGGATGATTGGCGGGCGCAG 12998 36 100.0 36 .................................... AGCTATAGCTTAAACAATGCCAAATATTGGCAACGC 12926 36 100.0 37 .................................... CTGGATAATTTTGATGAGCTCCTCGCAGAAGAATTGT 12853 36 100.0 37 .................................... CTTGCGATCGGCGAACGCCCGGGCCGTCAGGATGATT 12780 36 100.0 37 .................................... TGCCAGTGGGCCTACGATGCCAGCCGTCGAGGTCCCG 12707 36 100.0 36 .................................... GCAAAGTATTCCATGCACCAGGAGGCAATCTGATTG 12635 36 100.0 37 .................................... CAGACCCGTCGTAAGACCAGCCCCAAGGCGTCCACCG 12562 36 100.0 35 .................................... CGTGGCGCCGTGACGTCGAAGGCCTGGCCGTCGCG 12491 36 100.0 38 .................................... ATTGGGGAAGCCGGTTGCCACGAATTTGCCTTTGCGTG 12417 36 100.0 36 .................................... CTTTCGACGAATTGATGCGGCGGATCGAGGACTTCG 12345 36 100.0 38 .................................... GCGACGGCCCTCGGCGATGGCGCGGAGTTCGGACATGG 12271 36 100.0 37 .................................... TAGTTCGTGCGATTCAGTCCGAATACGAATTTGGTCG 12198 36 100.0 37 .................................... CAGGCCGACCCCACCGTCACCCACCTCCAATACATCG 12125 36 100.0 37 .................................... TGGCCCAGGCGCGGAGCTGCGCCAGGATCTCCTTCGA 12052 36 100.0 37 .................................... TCCATCTCCTGGAATCGGAGCTCGAGGACCTTCCGGC 11979 36 100.0 37 .................................... AAGACATTGATCATCCAGGCCGAAAACGGCGCCGTCA 11906 36 100.0 38 .................................... CTGACCACCTGTCGCTTGCTCAGCTGTTTCATGGCAGT 11832 36 100.0 35 .................................... GCGTCGGGGGTGAAGGCTGCTGCTCGTGGTCTGGG 11761 36 100.0 35 .................................... ACGCCCTGCCCTACGCCCCAACCGACGACCCACGG 11690 36 100.0 38 .................................... CCGGTGGGTGGTGGGTTCAGCCCCAGCGCCCCGCGTCA 11616 36 100.0 38 .................................... GGCGGGAGTTGCGGTGGGTGTGTCCGCGGTATCGGTTC 11542 36 100.0 38 .................................... ACTACCCACCGCAACAGCCCGCGCAGCATCCTCCACCC 11468 36 100.0 38 .................................... TTGGTCAGAGCTGTGGTTGAAATCGTGCGCTCCAGGTC 11394 36 100.0 38 .................................... CGTTTGCCGGATGAAGAGGTTCGGAGTTTTTGGTTGCG 11320 36 100.0 38 .................................... ATAGTCTTGGCGATGCTGCGCGGTGTGGGGGGGTGCGG 11246 36 100.0 37 .................................... CTCCCCAACAGAAACGCACCCTCCCGAATGCATACAT 11173 36 100.0 36 .................................... AGGGGGGTGCGATCCCTGGCGGTCAGGCTCGTTGGT 11101 36 100.0 38 .................................... TGCAGTCCAGCACGCGATGGATGTACAGTCGCGGGCCG 11027 36 100.0 39 .................................... ATGTCGAGTGAGTGAGTGGGTCTGGGCTGTGTTCTGTCT 10952 36 100.0 40 .................................... ATGAGCTCCTCGCAGAAGAACCTCACGTCGTCGGCGTCGT 10876 36 100.0 37 .................................... GGCAAGCTTTTTCAGATTTCCGGTTTTGAAATTTCAA 10803 36 100.0 38 .................................... TGTGGCAAGGTCAGTCCTCGCCATGCGTGGAGACCTTC 10729 36 100.0 36 .................................... GAGGTCTATGCCAGCCCGACGGTGCGGAGCCCTCTG 10657 36 100.0 38 .................................... AGTCAGCATCCTCAGAAGAGTCCCGGCGCAAGAGCAAG 10583 36 100.0 36 .................................... GTGAGGAATGCGCTCTTCCTTTGCAGAAGCGGAGAG 10511 36 100.0 39 .................................... CCAAAGCTTTGTGGGTTGTGTGTTTTGTGTGTGTTGTGT 10436 36 100.0 40 .................................... GACGTATGACACAACTTGGCAAGCTTTAAGCTTGCCAAGT 10360 36 100.0 36 .................................... TAAGTCTTCAGCTCGAGCCAGCCTTTGCGCGGCACC 10288 36 100.0 38 .................................... CATACCGCAGTGTTTCACGCATTTCGTGCAGGTGTTTC 10214 36 100.0 39 .................................... CCTTGCTGCCGCGCGGCTCGGGATCTTTGCCGCCGCCGC 10139 36 100.0 36 .................................... CAGCTGCAGCTGGTCATGCCCATGCGGGCCGATGCC 10067 36 100.0 37 .................................... CTGATGAAAGGAGCTGATCATGGACACGATGCGTGAA 9994 36 100.0 38 .................................... ATGGTCCATCCGGTGTGGGGAAGTCGAAGATCGCACAC 9920 36 100.0 37 .................................... AGGATCGGGGTGCCGGTCATGAAGATCCGGCGCTTCG 9847 36 100.0 40 .................................... TAGGCCTGGGGCATGAGTACGGTGCGCTGCGGGACAGGGG 9771 36 100.0 37 .................................... AAGGTGGGGCAACTGCTCCGACAATTGGGCGGTGGTA 9698 36 100.0 38 .................................... GGCGGATGCGTTCGTTGCTGCTCTTGGGGTTGCCGCTA 9624 36 100.0 38 .................................... AAGAGGTTGGGATCGCCGGCCTCTGCATCGAACGCCGC 9550 36 100.0 38 .................................... CGTTGGTGATTTCCATTGTCCATGTGCCTCCCCTCCAC 9476 36 100.0 36 .................................... TCTACGTGACCAGTCAACAGCTCGACGCAGCGCCTG 9404 36 100.0 39 .................................... GCGTGGTGCGCAGACGACTGGTGGCAATACGAACGTGGG 9329 36 100.0 37 .................................... CCCAGCAATCTCCCATTCCTCTATCTCGCCGGTTTCG 9256 36 100.0 36 .................................... GGATGCCGGTGCAGTGCAAGCTCTGCGGTTGCATCA 9184 36 100.0 36 .................................... CACAACTTGGCGCCATGGCCTTCTGCCGATATTGAG 9112 36 100.0 39 .................................... CAAGATGATGACACGGCGGAATAGTCCGTCATTGACTGA 9037 36 100.0 36 .................................... CCGCTGTACCTCGCCGCGCTGTATTGTCACAATTCG 8965 36 100.0 37 .................................... CTGGCGCCCGGAATCCGCTGGAGAATGTTACTGATGC 8892 36 100.0 39 .................................... GAGGTGCGGTCAATCACAATCCGAACAATGCCTCGACAA 8817 36 100.0 37 .................................... TTTGAGGGGGCTTCCTTTTTGGGGCTTGACAAATGCC 8744 36 100.0 36 .................................... CGCAGGTGGTCGTTCGGGAGTATCCGTTGGTCAGTC 8672 36 100.0 37 .................................... GAAGGGGACGCCCACGGCGGATTGATCGGGACCGGCG 8599 36 100.0 38 .................................... CATCTCTTGTTGAATGGCCTTCGGACCTCCCAGCTCCA 8525 36 100.0 37 .................................... CGACCGACGCGCCTGGCTCGCAGCCAGTCGCGAAGAT 8452 36 100.0 37 .................................... ACGCCGATCATGCGCATGCCGGCGAGATAAGGCACCG 8379 36 100.0 37 .................................... AGGTTTGATTCTGGCGGCCTCAGAGTGGATGGACTGG 8306 36 100.0 37 .................................... CAGCAATGCTACCACGTCAATCGAAACGTTGTCATGT 8233 36 100.0 36 .................................... AACGCAGCCGCGGTCAGATAGCCCGCGTCGGCAATG 8161 36 100.0 38 .................................... ACGCCATTGAGCATCAACGACTTACAACGACCTCCAGG 8087 36 100.0 39 .................................... AACGATGACCAGGAGGTCCGGGTGTTGGTGCTGTCGATC 8012 36 100.0 38 .................................... CGGATCTGTTCGGCTCGGTACAGGGTGAGGTAAGGCCG 7938 36 100.0 38 .................................... CTCCCGGGAGTGACCCAGTTTTCGGTGGGGAAAGATTA 7864 36 100.0 37 .................................... GGGGAGACGTTGAGGGATTGGCTGATCACGGCGGCGG 7791 36 100.0 39 .................................... CCAGTCCAAGGGAGAGTCCGCGTGAGAATTCCGCATTTT 7716 36 100.0 38 .................................... ATACTCCTTCAGCATCGCGACTGGATCATTGTGTCTCC 7642 36 100.0 38 .................................... GTTGATCACCAGCCCCGGGAATGCCGCGTACTGGACCG 7568 36 100.0 37 .................................... CACGAAGATCCTCCCCACATTGCCGAACCCGGCCATC 7495 36 100.0 36 .................................... ACCAAATACTTGGCCACATACGACCCCGCGGCTTCC 7423 36 100.0 35 .................................... AGTGCGGTCAAAGAGGTTACCACGCCATCCGGCGG 7352 36 100.0 35 .................................... CCGAGGGGCCCCCAGGACCAAACGACGCTCTAAAA 7281 36 100.0 37 .................................... GGAGCGGACCAAGGCCGGGCGGATCCATTACCACGTG 7208 36 100.0 35 .................................... GGGCGGAGGCTTGCGATGCTTCCCACACTGACCGA 7137 36 100.0 38 .................................... ACCGCAGCAATCACATCTGCCATCCACAGGTTGGGCGT 7063 36 100.0 36 .................................... CTCACTGGCACCCACCGGACCGCATCCACCGGACAG 6991 36 100.0 36 .................................... GACGCGGCATGGTGGGATCGGAAGGTCGCCCTGGAA 6919 36 100.0 35 .................................... GTTGACCAGTCCGCCCATGTCCACGGGGGCGCCGA 6848 36 100.0 37 .................................... ATATCGCTCCTCCTTTCAGCTCTTCTTCGGGATTGGC 6775 36 100.0 38 .................................... CGTATTACTCTTCGGGCACCTATTGGTGGGGGTGGGTT 6701 36 100.0 37 .................................... TCAAGCTCATACATCACCCGCCTTCATACGCGACCAA 6628 36 100.0 41 .................................... AATAGCACTACTACATGGTAATGCCACCGCCCGTTGCGCTG 6551 36 100.0 37 .................................... GGGCCGCCTCCCCACCCATTCCGCCCGGCACCGCCGG 6478 36 100.0 36 .................................... GGACTGGAGGGACTCTGATGCCGGGCGAAGCTGGAG 6406 36 100.0 37 .................................... GAGGGGTTCCGACCCTCCGGGGGGCTCCCCCGACCAC 6333 36 100.0 37 .................................... CTTCACACGCATGACTCACCACTACCCCAAGGAGGGG 6260 36 100.0 36 .................................... AACCCGAACACGTGGGATGTGGAAGAGGTGAGTTTG 6188 36 100.0 36 .................................... TGGGGGCATTCTGAAGGCGTTAACGTTCCGTCGGCG 6116 36 100.0 38 .................................... CCGAGGGGCCCCCAGGACAAAACGACGCTCTCAAAGCC 6042 36 100.0 36 .................................... ATTTCCAGCTTCGCTGGATGTGGCTCACTGCTCCTG 5970 36 100.0 35 .................................... TCGGGGGGCTATCGGCCTTTTCAGGCCATCTGAAT 5899 36 100.0 36 .................................... TAAACATGCGCAAAACTTTTCGAAAGTTTTCTTTGG 5827 36 100.0 39 .................................... CCGGACTGTAGGAGCAGAGCCACGAGTACCAGACCTGAG 5752 36 100.0 37 .................................... TGGTTGCGGCGCCTGCCTTGGGTGGAACAACCCCTGC 5679 36 100.0 36 .................................... TCCCTTCCCTCCCGCCACGGATCGATGAACCGTTGT 5607 36 100.0 37 .................................... CAGGCGCTGCCACGATACTCAAGCTGTTGGGCGACCC 5534 36 100.0 36 .................................... CGCGGCTCCGCTGGTTTTGGTTGCGGCGCCTGCCTT 5462 36 100.0 37 .................................... ACGGCCAATGAATTGGCGGGTACAAATCGGCGCTTAT 5389 36 100.0 40 .................................... CTGACGGCTCTGCCAGTCTGACAGGAATCCCACCAACTCA 5313 36 100.0 36 .................................... TCAACCTTGATCAGGGCAACCTCTGTTTCGATGAAA 5241 36 100.0 36 .................................... CGGATCGGACGGCCAGGCACCTGATACGGGCGTTGT 5169 36 100.0 36 .................................... AAGCGCAGGATGGCCGGGCAATCGCGCCAGGAGCTC 5097 36 100.0 38 .................................... TATTGGGGGCGAAGAAGGAAGGCCGCCCACCGTTGAGT 5023 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 168 36 100.0 37 GTCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGC # Left flank : CCCATTATTGCCGACAGCGCCGTTCTCATCGCAATCAACAACCGCATGCTCACACCCGACGATTTCGTCCAGGTAGGCCCCTCGGTCGCCCTCAAAAACGACGCTCGCAAACACTTCCTCCGTGCATACGAGCAACGCATGGATACTTTGGCCACACATCCCTTGTTCGACTACCGGGTCAGCTACCGCCGAATTCTTGAAATCCAAACCCGTCTCCTGGCCCGGTACATCAACGGCGAGGTCCCGCAGTACAGCGCATTCGTCACGCGTTAACTTGAAGCACATTGACGGCGACAACGCACGCATTCAGCATACTCCGCATGAGCGAGAGGCGAGGTGATGCGACAACTGCGGCGGGCGCTCGCGCCTCGTAAGCCACGCCGCTGCAACAGGTTGCGGGTCTGCCGGGCGCATTGAGAGCGCCTTCGCGCTCCGCAGATGGGTCGCCGCTCGCGAACGCTTGACGAGCTCTTTGACAACCAGGTACTTAGTAGGGCGCA # Right flank : GGGGAGGTGATCCAAAAGGTCTCCAATCAAACCGCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAATTCCCCGAGCTCGGGTCCCGTCGCACCTGGTCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGCCGCCGGCGGCTCCTCCACTACTCGATACTCCTCCACGTCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGCAAGCCGTGCAGGCTTGACATTCCGGGCCATGACGGCGTCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGCGGTGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCGCTCACACGAGCGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.70,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //