Array 1 1067166-1068170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068803.1 Escherichia coli strain RIVM_C018404 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1067166 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 1067227 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 1067288 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1067349 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 1067410 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 1067471 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 1067532 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 1067593 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1067654 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1067715 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 1067776 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1067837 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1067898 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1067959 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1068020 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1068081 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1068142 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1083669-1084674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068803.1 Escherichia coli strain RIVM_C018404 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1083669 29 100.0 32 ............................. TCTATTCACCAAAAGAGGGTGATATTGTTATT 1083730 29 100.0 32 ............................. ACGTCGGCACGAATTTTACCTGCTATTCGTCA 1083791 29 100.0 32 ............................. CGTGTCTCGCAACAAATAGCGGGCGTCCGTGC 1083852 29 100.0 32 ............................. CCGCACCCGTCCTCGTCGGCCAGCGTCCACGC 1083913 29 100.0 32 ............................. CCGCGTCTCTATTCCGATTTGCCGCACTGCGT 1083974 29 100.0 32 ............................. ATCGACATGCAGCGCGAACGGCTGCCCCTCAC 1084035 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 1084096 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 1084157 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 1084218 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 1084279 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 1084340 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 1084401 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 1084463 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 1084524 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 1084585 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 1084646 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //