Array 1 194717-196575 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZA01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP2490 NODE_2_length_270824_cov_78.937360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194717 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 194778 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 194839 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 194900 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 194961 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 195022 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 195083 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 195144 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 195205 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 195266 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 195327 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 195388 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 195449 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 195510 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 195571 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 195632 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 195693 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 195754 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 195815 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 195876 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 195937 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 195998 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 196059 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 196120 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 196182 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 196243 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 196304 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 196365 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 196426 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 196487 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 196548 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 212708-214306 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZA01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP2490 NODE_2_length_270824_cov_78.937360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 212708 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 212769 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 212830 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 212891 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 212952 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 213014 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 213075 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 213136 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 213197 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 213258 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 213319 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 213380 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 213441 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 213502 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 213563 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 213625 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGTCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 213728 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 213789 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 213850 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 213911 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 213972 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 214033 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 214094 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 214155 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 214216 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 214277 29 96.6 0 A............................ | A [214303] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //