Array 1 294379-297168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATHD010000004.1 Paenibacillus sp. HB172176 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 294379 32 100.0 35 ................................ GCTCTATCATTCCTCTTCCTTCTTCCAGCATCAAG 294446 32 100.0 33 ................................ CTGATTGCCTAATTCGAAAGCCAGTCATAATGC 294511 32 100.0 34 ................................ TTTTAAAAACTCATTTGGCTCAAATAAAAAACGA 294577 32 100.0 35 ................................ TTTGGTCAATTTACAGGTTATTGCAGTATCCAATA 294644 32 100.0 34 ................................ CTCCTCTGACATGTCGTTTTGATCGCGTACACTG 294710 32 100.0 33 ................................ TTCTATGGATAAAATTTCAAAGGAGGTGTGTGT 294775 32 100.0 36 ................................ GCAAGCTCGCGCTCAATATAGCTGTTATGTACGAAA 294843 32 100.0 33 ................................ ACCTGTGACATGATTGAGCGTGGTGTTCGTACC 294908 32 100.0 34 ................................ CCGCAATGTACCCCTTGCCGCCGACCATCTCAAT 294974 32 100.0 34 ................................ TCAACTCGTTTCAAATTATCGAGCAGCCGGGCAA 295040 32 100.0 33 ................................ TCCCTTGCGGTATTTAACCGACAAGGACTACTC 295105 32 100.0 34 ................................ CGCGATGCAGCCTCGCCGCTCAATCTGATGCTGG 295171 32 100.0 33 ................................ CATCGGTTTCCGACCGTCTTGCAGAATCCCTAT 295236 32 100.0 35 ................................ GGTGCTGCTGCTTCTCATGGGCAAACGCATTTGGA 295303 32 100.0 33 ................................ CGACTTTGTTGGAATGAAGTGGAACGCCGATGC 295368 32 100.0 33 ................................ GGACAACGTTGCGTTGTCGCTGAAGAACATGAA 295433 32 100.0 33 ................................ CCTGATTGGGGTCTTGGCTCGTTGGGAGTGATC 295498 32 100.0 34 ................................ ATTTGAGTGATACACTTGTAACTTATACATTTAA 295564 32 100.0 33 ................................ TCTGAATGAACTAAAGGCTGATAAGGCCTCGCC 295629 32 100.0 34 ................................ CGAATCGCTGGGGATGCGGAGCGAGTCGAAAGCG 295695 32 100.0 34 ................................ CTCTCCATTGCTTGATTAAGCTGCAGTTTGCTGA 295761 32 100.0 34 ................................ CCGCATCAGTCGGGAGACGAGGGAGCAATACGAA 295827 32 100.0 33 ................................ GTACAACTCTTTGTTTGAAACGTGCTTATTAAT 295892 32 100.0 33 ................................ GTTTTGCCTTACGTTGGACTCACCTTTCGGCTT 295957 32 100.0 34 ................................ ACCACGTACTTTTTCGGAACGGTCGTGCGGGGGA 296023 32 100.0 33 ................................ CTCCGCTGGTACCGATAGGAGCGCGACTGCTTT 296088 32 100.0 34 ................................ TTAAAAGCGACCTCAGCATACGCCATCGCCTCGC 296154 32 100.0 33 ................................ CCATGCCGACCCGGTGAATGTCGCTTGTGTCGT 296219 32 100.0 33 ................................ GTTTGCCCTGGCATCGAACGAGTAGCCCACAAC 296284 32 100.0 35 ................................ CGAGCACGGAAAACGAGAGCACCGGCGAAGTTAAA 296351 32 100.0 35 ................................ CGTTAATGTTGTTAGCAAGGTTATTCAAACCAATC 296418 32 100.0 33 ................................ CTGTTGACTCGGGCATGTCGTAAATCAAGTTTA 296483 32 100.0 33 ................................ GACCGATGACGGGAACGCCAACCGTAAAGCTTG 296548 32 100.0 33 ................................ GTTGGATCGTGAAAGAACAGAAGATTGAGCCGA 296613 32 100.0 34 ................................ GGCTCGAAACGGAGCTGCGTGGGATCAATCGGGA 296679 32 100.0 33 ................................ TCAGGTCTGTTTTGAAGTCGAAGCACCAGTGGA 296744 32 100.0 33 ................................ GCTGCCGGTCCGCCAGCTCCGCAATGCTGTTGG 296809 32 100.0 34 ................................ ATACATCGTGAGATTATCTTAAGGCTATGTGAAA 296875 32 100.0 34 ................................ CGGCATGATAAACGGTGATACAAAGCTATGGCTA 296941 32 100.0 33 ................................ GTCGCTACAGTCCATCGACCGGACGCGAGTTTC 297006 32 100.0 34 ................................ CAGATGTCCCATGGCGTCGCCTCGTGCCAATCAT 297072 32 100.0 33 ................................ AATGTTAGCGTTGCAAAGGTGTGCCGCATTGTA 297137 32 84.4 0 ..........C.A...........C.....GG | ========== ====== ====== ====== ================================ ==================================== ================== 43 32 99.6 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CGTTTCGGGGATGGCTGCCGGCGGCGCACATATCGTATGCTTCACGACGGGAAGAGGCACGCCCACAGGAGCGGCAGTCGTGCCGGTAATCAAGATCACCGGCAATCCGCGAACCTACAAGCTGATGGAGGACAACATGGACGTCGATGTCAGCGGCATGCTGAGCGGCGAGCAGAGCCTGGCCGCGGCAGGCGAGGCGATCTGGCAGGAAATCGTTGAGGTGGCGGGTGGCAAGTGGACCAAGGCCGAGGTGCTGGGGCATCAGGAGTTTAGCATTAACCGTATTGGTCCTAGCTTGTAATTATGGGAAATGATAGAATGATAGAAAGCGGTGCGAATGCCAAGCTCACATGAAAATGCTGGGGGATTCGCACCGGAAATAAAGCGAATTGTGTTCGATTTATGCACAATTCGCTTTAGTGTATGAAAGTTTTTTAGTGTTTTGAGTGATTTTTTGATGCAAAATGGACGAATTTGCTCCAATTTGTTCAAAATTCGCT # Right flank : GAGGGCGTTGATTGGCAATTCATGACCGACGATGCAAGGATTGAACTAAAACGACTTTACCCACATTTTGGGATTGATGGTACTACAGACAATTGATGTAACACTGCGTTCCAACGCTACAGCGCCGTTCTCGATAGCCTTTGTATGTTCGATGTACTGGCTGTGTTTGCTATAATCATAATCACAATTAACGATTGATCGTCAATGATCAAATCATTCTTTTTAATAGTCTTTTCGATATTGAAAGATTTTGTTTATCAATGCAAATTTTGATAATTTCGAATGGCAACACATCAGGATGGATGGCATCCGACAAGGCTAACATACGAAACCAGATGAGATAAAGGGGAAGATTTCGCTCCGATATACCGCGTTTCATCTTGAAATAGGACTGCAGCTTATTAGCAACAATCGCAATCGGAGAGTTTTCGGTTGAATTGGCAGCAATATGAGAGGGTAATTGATCCTGCTGATGAATCACGCGAAGCAGCACTTCGCTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 306740-311950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATHD010000004.1 Paenibacillus sp. HB172176 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 306740 33 97.0 32 ................................A ATCTGTACCAAGCGCTCATTCTCAACTCGTTT 306805 33 97.0 32 ................................A TGTCCTCACCTCCGTTATACTAAGTAAGGCAT 306870 33 100.0 31 ................................. AGCACGACAGAGGAACTCCACTCGCTCAAGA 306934 33 97.0 32 ................................T CGTAAAGCTGGCGGCTGTAGGGCAATGACTCA 306999 33 100.0 32 ................................. AGTCTGCCGCCGTTGCAACGAGATTCGGAATG 307064 33 100.0 32 ................................. TCGCTTCTGCAAGCGACCTCGCTTTGCTATGT 307129 33 100.0 32 ................................. CAAGACTAACCCCCACCACAAGTCCGACTGTC 307194 33 97.0 34 ................................A TTTGGTTGTTTTTTAAATTATGGGATTTAGCTTG 307261 33 97.0 33 ................................T TTTAAAAACTCATTTGGCTCAAATAAAAAACGA 307327 33 97.0 33 ................................G CTGCTCCTGCTACTGGTGACACTGATATTGATA 307393 33 97.0 33 ................................T CCCTTTGATACCTTAAGCAAATTTTAACTCGAT 307459 33 100.0 32 ................................. CAACACGGAAGCGTGGGAGAAAGCCGAGCGCA 307524 33 100.0 33 ................................. CTTTTGCCGATCCAGCACCGCGATCTTTGTTGC 307590 33 100.0 33 ................................. ACTTGAAAAATGGTCGCAAGAGATGTGGGACGT 307656 33 97.0 33 ................................G CGCTCGCATCGGAAGAGGAATGGGAACGTCCCC 307722 33 97.0 33 ................................A CAAATTGGCAAGAACCGCTATGCAGAAGCGAAT 307788 33 97.0 32 ................................A ATCCATGTTATTCCTACATCTGTGCTTATTAG 307853 33 100.0 33 ................................. TGCGATGCGGTAGCCCTCGGGGATCGCGTCCCA 307919 33 100.0 32 ................................. CTTTTGCCGATCCAGCACCGCGATCTTTGTTG 307984 33 97.0 33 ................................G CTCCATCCTCCTTCGCAATATGAATCTATCAAA 308050 33 100.0 32 ................................. CGATCCATGCAAGGTTAAGTTTGCGCCCGTGA 308115 33 97.0 33 ................................T GCGCCAGCCGAACAACTTTTCAGCGATTAGAGC 308181 33 97.0 32 ................................A CTAGACTGTTGCTGCTGCACAAGTCTTGTTTA 308246 33 97.0 33 ................................T CACCGATCCCATTGGGGCAATCTCGATCACTAT 308312 33 97.0 33 ................................A AGCGGGATCGTCATATTGTTTTTCGTCCGAAAG 308378 33 97.0 32 ................................G GAGCGTTACTGATTGGGTTATCGGTATGGGCA 308443 33 97.0 32 ................................G GATTTGTCCGTCTCGGGTTACAAGTCAGTTTC 308508 33 100.0 32 ................................. GACTTTGTTGGAATGAAGTGGAACGCCGATGC 308573 33 97.0 32 ................................G GGATCACAGGTAGCACCCCATAGAATGGAAGA 308638 33 100.0 32 ................................. CCGCTGTCTCGATGATGTCGCCCAAGTACACG 308703 33 100.0 33 ................................. GCTCCATCACATTTTGATGGACGAAACGGCAAC 308769 33 100.0 33 ................................. AGCGCGGGAAGCTCGCTCGATGATGTGATCGCG 308835 33 97.0 32 ................................G AATCAGACATTGCCCCCACCTCCTTGCTGGGA 308900 33 100.0 34 ................................. AATCTGCGTTTTTGCGGTTACGCCGAACCAGTAA 308967 33 97.0 33 ................................G AGTCTCGCCGTTAATTGACAAGTGTTCGCATGA 309033 33 97.0 32 ................................A TTCATCCATGCGGATAGTCAATTCGGACAAAG 309098 33 97.0 33 ................................G CGAAGTAATCTATCTGTACGCCGGAGAGAGGGG 309164 33 97.0 32 ................................T CCTGCCTCATTTGTTGCTGACCACGGAACTAG 309229 33 97.0 32 ................................A TAATCAAATTCGTCTGATTCGCCTTTGTGGCG 309294 33 97.0 32 ................................A CTAAATAATAATACGCCGGATGCACTATACAT 309359 33 100.0 32 ................................. CTCGCCATTTTTAAGCCATAGAAGCGGCAGCG 309424 33 100.0 33 ................................. TTGAGAAGGTATTAACAGCAAATGAAGCACGCG 309490 33 97.0 32 ................................G ACACCGAACTCTGCACGCTGGGCCATCTCTAA 309555 33 100.0 34 ................................. CGCGCTGGTCGATTGGTCAAGTCAAAACGTGCAG 309622 33 97.0 33 ................................T CTATTGGCGGTGATGGGGATATGAAGGTAGTAG 309688 33 100.0 34 ................................. CGCGCTGGTCGATTGGTCAAGTCAAAACGTGCAG 309755 33 97.0 33 ................................T CTATTGGCGGTGATGGGGATATGAAGGTAGTAG 309821 33 97.0 35 ................................A GGTCCCTAATCCTCGCATCGGGAAAGAAATAAAAA 309889 33 97.0 32 ................................A TAGCTATACAGCGGAAGAATTGCTTGAGTTGC 309954 33 97.0 33 ................................T ATTGGGGGTGTTACAATAAGGAGACATTGATGA 310020 33 100.0 33 ................................. ATCATCGAGATATCCAATCTCGGATATCCTTGA 310086 33 97.0 33 .........T....................... GCTTTTTTGGTCGGGATGTGTGTTTTAAAATCC 310152 33 97.0 32 ................................G CGTATCAAGGCGGTTAATGGACGGTGTGGCGA 310217 33 97.0 32 ................................T TGCAGCGTATCGAGATAAACCGATACAGGAGA 310282 33 100.0 33 ................................. AGTCCAAGTACAAAATGGGTGATCCGATCACAT 310348 33 97.0 33 ................................G ACTGTATATATGATACTGATATTGGATAAGCGA 310414 33 97.0 33 ................................A ATGAAGCATATCGAGCATATGAAAAATCCCTTG 310480 33 100.0 32 ................................. CTGCATGAGCGCGCCGCCATTCCGAACGTTTC 310545 33 97.0 32 ................................G GTTTATAGGTTCTCAGTGACTGCGCCTGCCGC 310610 33 97.0 32 ................................T TTTTTGAGCAATCGCCCAACAAGATCATCCTC 310675 33 97.0 33 ................................A AACCACTTGCGTACCTCTCTGCTGCTATGTGCC 310741 33 97.0 32 ................................G GTATAGTAGACCTGACCTTTTAAGATTGGTTT 310806 33 100.0 32 ................................. AATTGCCGTTGCTGTCCTTTTCGTATTCGTAT 310871 33 100.0 32 ................................. ACATCATCTATAATATTGTTTCCGTTTTTTGA 310936 33 100.0 33 ................................. AGGAGGGGTAGGGGGGGCAAAATCTCTATCAAT 311002 33 97.0 32 ................................T ACTTGCAAATTTGTAACATCAATCGGAGGCGT 311067 33 97.0 33 ................................T CCCAAGGTATATTTACCTCGGGGATTTTGGATC 311133 33 97.0 32 ................................A TTGCCAGAGCATCAAATTTCAGGAGCTCATTG 311198 33 97.0 32 ................................T ATCCCTGATGTAGCAGGCTTCGCACTTACCTC 311263 33 100.0 32 ................................. ACCATCCATAAGTAGCCGGATTCAGCGTTTGA 311328 33 97.0 34 ................................T TCGCTGGATACAGGAAATTCAACAGAAAAACTTG 311395 33 100.0 34 ................................. ATGGACGTAAATTCATCAAGCTCCTCGTACCAAA 311462 33 97.0 32 ................................T GTTACCTCTTTACTTCGCATTATGCGGTCTAC 311527 33 100.0 32 ................................. TGTATCGGGCAGAGAAGTGTCGGGATTAATAA 311592 33 100.0 32 ................................. AAACGTTCCTATGACGCTGTATCCGGCTCTAG 311657 33 97.0 33 ................................G GCTGCTTGCCCCCTATGCTCAGCAAGTCGAGGA 311723 33 100.0 32 ................................. GAAAACGAACAGCACCGGCAGCTTGTCATCCG 311788 33 100.0 32 ................................. TCGACGGACATCGCGTCATCTTCTCCACGGCC 311853 33 97.0 32 ................................G CAAATCCACAAACGGTTGAAAGTATGGATGAG 311918 33 87.9 0 .............T....A.....G.......T | ========== ====== ====== ====== ================================= =================================== ================== 80 33 98.0 33 GTCGCATCCCTCGCGGATGCGTGGATTGAAATC # Left flank : CTAAGTATTGCGCAGGGCTTGCGCTCGAGATATCCGGAGCATTTCCGCGCTTGGTGTATGAGCGCTTCAACCTATCTGTCATATGTCGATCAAGGTATTGGCATGGGAGCGGAGGAGCGCGGAAGAATGATGCAATTTGTTGACATTTGGGACTCGCAGCTGCCGGTATTAATGAATGAACACGGAGTTAAGCTGCATCAGGAGCTGTGGGTTGACGAACTGGTGAGAGATATGGAGAGGCGTTGTGAGAGGCGGTAAAAGGAGCTTTTAAAACGGATCTTCACAATACATGTGTGTATGGTAAACTGAATGATAAAGGTGCGAAATGCTGGTGCGAATGTGAAGCGAACATGGAATTCCCGGGGGATTCGCACCACATTTTTCTTCCGAATTCATTTGATTTTTAATGAAACGGGAATAAACAAAGATTGTAATGCGTATTTTTACATCTTTTCGAATGAGATAAGAGCGGATAAATGCTTTTTGATGCAAAATTCGCT # Right flank : TTATCCCAAGTGTCAACATTAGCTAGCATGTTGGTTGCATCATACACAGAAACGTAGATATTAACCAGTTTATTTTTGCACTACTGACATACATCTCGAATAACTTCAAGAAAAAGTAAGAACCCACCCCAAGGTTAGCGCCAAAGGTGGGTTCTTATTCCTATAAAAACTTGAAGGGATATACCATCCAAGCCTTTTGTCTAGCTGAGTGTTACTAGCACTCGGCTCTTTTTAAAATATGATAACACATTTAGAAAAAGAAGTGAACTTTAAAAGCTGTTGTTCCAGTGTAGCTATCACCGAGATCATAGAAGATTCGGTATGGCTTTTTTTGCTGAACAAATCCCCGACGGGAGAAATGGGAGGGATAGAAAATATTTCATAAGTATAAAGGATACTGGAAACGGATGTCGAAATGTAGGTATTAGGAACCATATTCAAGGTGTGCATTCGATTAGTACGGATGGAGGCTGGGAACTGTGGACTATATCGCTCATATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 320725-321349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATHD010000004.1 Paenibacillus sp. HB172176 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 320725 33 97.0 33 ................................T CCACAAACTAGCTGGGGAAGCTTTTTCATTTGC 320791 33 100.0 32 ................................. ACTTTCGGACGAAAAACAATATGCCGATCCCG 320856 33 100.0 33 ................................. ACGTGAAACAATTGACGGTGATGAATATCGAAT 320922 33 97.0 32 ................................A TCGGGGGATGGAGCAAAGTCGTCTTCCTCGGA 320987 33 97.0 32 ................................G CGGCTTGGTCATGGACTATATGACCAATGTCA 321052 33 97.0 33 ................................T TGTAAACTTCTATGGATAAATTTTCAAAGGAGG 321118 33 100.0 35 ................................. CTCGACATAACCCCGTACGATCTGTGCAACATAGC 321186 33 100.0 32 ................................. GATGCGAGCGCGAATGCCATACGCGCAGCCGC 321251 33 100.0 33 ................................. AGTCGATACCGTATTGACGATTTTAATCATCTA 321317 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= =================================== ================== 10 33 98.5 33 GTCGCATCCCTCGCGGATGCGTGGATTGAAATC # Left flank : GATGTGAGTACGACAAGCAGCGCCGGACAGCGCCGCTTGCGCCAAGTGGCGAAAACCTGTCTCGCTTATGGTCAGCGCGTGCAAAATTCTGTATTCGAATGTATTGTGGACAACACACAGTTTGCCCAGTTGAAATTGAGGCTGAAGGATATTATTGAGGAAGAGCAAGACAGCCTACGATTCTATCAATTGGGCAATAACTATCAGAGCAAGGTGGAGCATATTGGCGCGAAGGCTTCGCTTGATTTGGAAGGGCCTTTGATTTTTTGAGTAGGTGGGAGCGCTCATGAATATGTGGTCATCTGAGTGTTCAAGGTGGTGCGAATCTCGGGTGCGAATGTGAAGCGAACATGAAATTCCTGGGGGATTCGTACCGGATTTTATTTTTGATATTGTTTGGTTTTTGGCAAAACAAAAGAAAACAAAGACAATTGCACTTGTTTTAAGTCAGTTTGTATGGAGCAAGAAGCGAAAAGCAGGGTTTTTAGGCTGAATTCGCT # Right flank : AGTCCGATGCGCAGCTTTTACTAGCGTTCGGCACGTCGCATCCTATATGGATGTCAAGGTAGGGGAAATAAACGAAATTCGTATAGATACCAAAAACAATTAAAAACAAGAATATGTGTTCTGTATTATCTTAATTCATAATGGTACAATATGGTTATGACAATCGAATCTTGGGTGGGCATGGTATCCCTTCGAGAATATGCTTACGAAGTACGTTTACTTCGTAAACGTTGGGGAGGTGATGCCATGAAGGTAGAAGCAGCAATAACGATCATGTTATTATTCGGATCATTTATTCTTGCACTACTGACATACATCTCGAATAACTTCAAGAAAAAGTAAGAACCCACCCCAAGGTTGTCCGCCGAAGGTGGGTTCTTTTCCCGATTTAGACTAGAAGGGATTACCCCCATCCAAGCCTTTTGTCTAGCCGAGTGTTACTAGCACTCGGCTCTTTTTAAGATATGATAACACATTTAGAAAAAGAAGTGAACTTATGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //