Array 1 65503-63806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYT010000003.1 Corynebacterium diphtheriae isolate YEM0035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65502 29 100.0 32 ............................. CGCGGGTAACGAGTTCCTTTTCTGCCATGACA 65441 29 100.0 32 ............................. GATCAAATGGACGTTCTATGGTAGGGGTTTCT 65380 29 100.0 32 ............................. AAAACCTGTTTTGGTTGTGCAGTCCCCGAACA 65319 29 100.0 32 ............................. AATGGATCGTTCATCCCATTCATAGCCTTCTC 65258 29 100.0 32 ............................. CTTTGCCTGGCTGCTGATGATGCTGGGGGAGA 65197 29 100.0 32 ............................. GGGATCTATAAACCACTAGTAGTCAACCGTGG 65136 29 100.0 32 ............................. CTTTGCCTGGCTGCTGATGATGCTGGGGGAGA 65075 29 100.0 32 ............................. GGGATCTATAAACCACTAGTAGTCAACCGTGG 65014 29 96.6 32 ............................T CCCTACAGATGAGCTCGACCAATGCCGTGGCA 64952 27 93.1 0 ...........................-- - Deletion [64926] 64930 27 82.8 32 --GAG........................ TCAAAAAATCCGATGACAGGTTCGGGATACAG 64871 29 100.0 32 ............................. CAGCTATTACTTTTGCTGAACTGGGGACAACC 64810 29 96.6 32 ............................G ATAAGTGGTTGGTGAGGTCTCTAAATCATCTT 64749 29 96.6 32 ............................G ACCAGGCAGAAGCCGTAAAAAAGCTAGCAGAA 64688 29 100.0 32 ............................. ACCCCACGGGTGCGGGTATCACCTAGTACACG 64627 29 100.0 32 ............................. CGTGGCGGGCCCGTCTTTGAGGAAGTTTTTTG 64566 29 96.6 32 ............................G CGCGTCACCTTAAGCTCCTCCTCATCGAGGTT 64505 29 96.6 32 ............................G ACGGGTGGTGTGGGGTATTTTTTTCACCCCAC 64444 29 96.6 32 ............................T CACCACATTGCCCTCATAACTGGATTGCTCTA 64383 29 96.6 32 ............................G GTTAGTTCCGCCCAGTCTCGTCACCCCACGCC 64322 29 100.0 32 ............................. GCTAGACCACCGCCCGTGTTGTAGATGCGGAG 64261 29 96.6 32 ............................G CCCTAGGATCTCACTCTTGTTGTGGGTGTGTG 64200 29 100.0 32 ............................. CCACGAAGGGTCTGATGACAAGACCACAAAAG 64139 29 96.6 32 ............................G TGCAGTGATGAAGTCTAGAAGGCAGGAATTAC 64078 29 96.6 32 ............................G CCGCAAAGATCGCTAAATCTAAGGCGCTGACC 64017 29 96.6 32 ............................G CTCCGTCTCGAACTGGCGTTTTAGCCCGCGAA 63956 29 96.6 33 ............................G TAACACACACGGGAAAGGGGAACAATGAATGCG 63894 29 96.6 32 ............................G ACGACCGTGGGAACCGCGAGGATAAATAGCAG 63833 28 96.6 0 ........-.................... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 97.5 31 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGCAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCGTAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //