Array 1 51089-52093 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHES01000008.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N43826 N43826_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51089 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 51150 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 51211 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 51272 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 51333 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 51394 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 51455 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 51516 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 51577 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 51638 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 51699 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 51760 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 51821 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 51882 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 51943 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 52005 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 52066 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68362-70221 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHES01000008.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N43826 N43826_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68362 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 68423 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 68484 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 68545 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 68606 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 68667 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 68728 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 68789 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 68850 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 68911 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 68972 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 69033 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 69094 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 69155 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 69216 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 69277 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 69338 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 69399 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 69460 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 69521 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 69582 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 69643 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 69704 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 69765 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 69826 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 69887 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 69948 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 70009 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 70070 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 70131 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 70192 29 96.6 0 A............................ | A [70218] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //