Array 1 367018-367901 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLR010000002.1 Aerococcus sanguinicola isolate As-55-B15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 367018 29 100.0 32 ............................. CAGCGTGTTTTCTGGGTACTTGATAGGGGTTC 367079 29 100.0 32 ............................. CACGGCCTAGGGACGCGCTATCCCCTTGTGCA 367140 29 100.0 32 ............................. GACAACACGGGGAGCTACCTCCGCCAGGGGGA 367201 29 100.0 32 ............................. GACAACACGGGGAGCTACCTCCGCCAGGGGGA 367262 29 100.0 32 ............................. ACTGGGGCAGTCATTAAACAGGGCGACACCAC 367323 29 93.1 32 ...T........................C TACGGCCTCAATATCAACTGGGGCGGGTCCTG 367384 29 96.6 32 ............................A AGTTCCTGATGACTTGAATGAATATGTGTTAG 367445 29 96.6 32 ..............C.............. CTAATTGAAATGTGATAAAGCTCCCGACCAGT 367506 29 96.6 32 ............C................ CCCGAACATCTGCGAAGCGGTCGCCTCGTAGA 367567 29 93.1 32 ............C...............C GCCCTCCAGTCGTGGTGGATAAGTACGCCAAT 367628 29 93.1 32 ............C...............C GGAGAATTAGGCCTGATGCACCTAAAGAAGTT 367689 29 93.1 32 ............C...............C AACTACTTTGGCATGAAGGCTAGCCCCAGTTG 367750 29 93.1 32 ............C...............C TCGTCCTCCTTAATTGCTCGATTGGCAACTAC 367811 29 96.6 32 ............C................ ATATAAGCATAAAGTTCATAAAACGTGAACTT 367872 29 100.0 0 ............................. | G [367889] ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.8 32 CTTCTTCCCGCATATGCGGGGGTGATCCT # Left flank : GATCCTAAAAAAGATCAAATGATCGAAATAGGCGCTTTAAAGATAGATGGGTCAGAAGAGAACATCTTTCATTCTCTGATCGCTAATAAGAAAATCCCTGAGCAAATTCAAAAACTAACAGGGATTAGCCAGAAAGACATAGATGAAGACGGTAAAGATGAATCGCAAGTACTTGCAAAGCTTCTCGAATTTATCGAAGGTCAGGTTATTGTCGGTTACAATATCAATTTTGATATTAGTTTTATTAATGAGCAATTGAAAAAGATGGGACAGGAGAATTTATCTAATCCAATTCTTGATTTAAAGACTATTGTCAAAAAGGAGAAGATGTTTCTAAAAAATTTTCAATTGCAAACAGTTTTAGCGAGTTACGGGATCAATAAAAAAGTCCCCCACCGAGCCTTGGAGGATGTTAGATTAATGGCTGAGCTCATTTCTAAAGTGAATAAATTTCCAGTTTACTTAAAAAAGAAAGCCCGGTAATACAGGGATCCTTTAGT # Right flank : TATTAGCGTTTACCCTCTAAATATTGCAAATTGTAATATATAATTAAGAAAAGAAGTGAATAAAGGGAGGTATAAATATGTTTCCTGAGATTTTGAAGAGCTACAGAAAATCAAGAGGCTTGACTCAGAAAGAATTGGCGAATAGGCTACACGTTTCTCAACCTACTATCGGGAGTTGGGAAGTTGGCAGGACGGAGCCTAACCAAGAAATGCAGAAGAAAATAGCCGATTTTTTCGGCATTTCTGTAAATACCCTATTGGGAGTAGATGATAACGATTCGGTTGACTTGAAAGTGTTACTTAAAAATTCAAGCATGACATACGGCGGAAAAGAAATAAGCGATCACGACTTAAAAGTCTTGGAAGGCATAGTGGAATCGCTGCTTGGCGGTGATGAAGGTGGGGATAGATAGCTTAATTTCAGATTTAATCGCTAAATATAATACAAACGATCCTTTTGAGATAGCAGAAAATGAAGGAATACTCTTCTCCTTCTTCCC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATATGCGGGGGTGATCCT # Alternate repeat : CTTCTTCCCGCACATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 154846-156095 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLR010000003.1 Aerococcus sanguinicola isolate As-55-B15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 154846 28 100.0 33 ............................ CGCACGGAGAACGTCAAATAAAGAGGGGCTTAT 154907 28 100.0 33 ............................ TCACAGTGGAATGCCGTGTAAGGAACGCCACAG 154968 28 100.0 33 ............................ TCCGGTCATCAAGGACATCGAACCCGTAGACAA 155029 28 100.0 33 ............................ TGTGGCAAGTGGATATTACAGGGGTGACAAAGG 155090 28 100.0 33 ............................ TGGCTACGGCAATTTCAAAGATGGCCCGTAACG 155151 28 100.0 33 ............................ TCAGCTAGACGAGACCACGCAACAATTAAAAGA 155212 28 100.0 33 ............................ TGGCTTTTTTTTGTTTTATGGATTTCAAATCCA 155273 28 100.0 33 ............................ CCTCATCTTCCACTTGTCCTAAAACTTCGAAAG 155334 28 100.0 33 ............................ TACTGGTATTTTTCTTTCTTTCCGGTCTCTTTG 155395 28 100.0 33 ............................ TAAATGTTGTAAGCGGAAAGGAAAACCTTGCTA 155456 28 100.0 33 ............................ TGATGTCTTCGCTATCGTCAAAGATTTCTGATT 155517 28 100.0 33 ............................ TGTAGGAGATAATCCATCTTTGGAATAGACTCT 155578 28 100.0 33 ............................ CCGTTTGGCCCCACTGGTCGACATGATGTTCGC 155639 28 100.0 33 ............................ CTGTTTGTATCATCTTCGGTCACCCATTTAATC 155700 28 100.0 33 ............................ CCGATTACGAAAATGAACGAAGGAGTTAAGGAG 155761 28 100.0 33 ............................ CATACCCTTGAACCTTATTTGGTTCTAAATCCT 155822 28 100.0 33 ............................ CCAACTTATTTTTTGAACGTTCTACCACATCTA 155883 28 96.4 35 ...........................T TGCTGAGTAGATAGTTAAAGGTAATCTGAACAGAA 155946 28 100.0 33 ............................ CTGTTATGCGCGGTATACAAAGAAGGATACTAC 156007 28 100.0 33 ............................ TATGCTAGCCGCCTACCCAGCCTTATTTTATTT 156068 28 75.0 0 .................A.A...TCCTT | ========== ====== ====== ====== ============================ =================================== ================== 21 28 98.6 33 CTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : TTATCCAACAAATCATTCGCTTTGGCTTGATCGGAGTCCTTGCCACAGTGATTGACTTCGCTCTATTAACGGCCCTCACCGAATGGGGCTATGTTCACTACCTATTATCAGCGGGAATTGCTTTTGTTGTCGCTACGATTTTTAATTATCTTGCTAGCATGCGCTATGTTTTCGTGAGTCGTTTCTCTAAAGAAGAGCGGCTTCAGGAATTACTCCTGTTTGTTAGCCTGTCAGTGGTAGGTTTGATTCTCAACCAGTTCTTTATGTGGGCCTTCGTCGAGAAACTTGGCATCTATTATCTCCTAGCCAAAGTCCTAGCTACCTTCCTTGTGATGGCGTGGAACTTTATCTCAAGAAAATTATGGATTGAATAAGGCATGAGGTTATCACTGGTTAAAGTGACCGAGATGGCTTATAGTAGCTATAGGGGATTTTTTTAAAGTGAATGAAAATGGCCGAGGGATCAAAAAAGAAGCCTGATTTGATGGGATTTCTTTAGT # Right flank : TTACTCAGTTAGAAAATCAAGGACATAATTATTACTAACTCTTTTCCGCCTAGACGGATACTTTTACTTCAGCCCAGATGAAAGCAATATTCCTTTTTTGATAATATTTCCCGATATCCCGAGGGCTATCACTCAGGGGAAGGATATAGTCGACGCGCTTTATATGGCCAGTGATTGTCTGGGGATCCATTTGGCAGATGCTTTAGAGCGTGGGCAAGCTTTGCCTGAGCCAAGTTCGATGTCTTCCTTGTCTTTAGATGATTTCCTTCCAGATGATGATGATTTCCATTTTGAGCGCAACCAATCCTTTATTTCTATGGTTTTAGTCGATCTCGATGATTATACCAGCAATTAAATCAGCTTTTCTAATCAGAAGCGAAGAGCTTTTATTTTAAAGCGTCCAAACTTTTGATACAATAAGATTAAAATAAGTAAGTGAAGGATGATATTATGGCCGGAAAAGTACGTGCAGCTTTGACCCATGCTCAAAATACCCAACT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //