Array 1 1930136-1926257 **** Predicted by CRISPRDetect 2.4 *** >NC_007503.1 Carboxydothermus hydrogenoformans Z-2901, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1930135 30 93.3 39 ..........................C..T CTGCGTTCTCACGCAATACATAAAAAAGCAGTCCCAGTT 1930066 30 86.7 36 ..........................CTGA TGTGGCCACTGGTGATGCTGGCGCTGCTGGCACGTT 1930000 30 86.7 36 ..........................CGGT CATTCAAGCGTTCAAATCACGATGGACATATACGTT 1929934 30 93.3 37 ..........................C..G TAAGAATTGGTGTAGGAGCGACAGAATACACAACGTT 1929867 30 90.0 37 ..........................C.TG TAAGCTGTCCCCGTGTATTTGTTAGTCCCGTTAAGTT 1929800 30 90.0 36 ..........................CC.G AGAATTATAGACAGCTTGTTTAACCCGATTATCGTT 1929734 30 86.7 38 ..........................CGCT TCGGAAGTAAACAAACCGGATGGTTTTTGTGAGGTGTT 1929666 30 86.7 36 ..........................CCTT ATTTTCAAATGGCTTAATACTTCCCTTGAACCCGTT 1929600 30 90.0 35 ..........................C.TT TTTTTAATTACCTCTACAATTCGGCCAGTATGGTT 1929535 30 90.0 36 ..........................CTT. ACTCACTTTTCACTACTTGTTTTTTTCATCTAAGTT 1929469 30 86.7 36 ..........................CCTT ATTTTCAAATGGCTTAATACTTCCCTTGAACCCGTT 1929403 30 90.0 36 ..........................CGC. TGAAAACTGTTTTAGTAACGCTATTCAAGCCAAGTT 1929337 30 90.0 35 ..........................C.TT TTCCAATATACAGAAGTAGTAATCTCAAAAGTGTT 1929272 30 100.0 38 .............................. AGACGCATGGCCAGTTCTTTTTGCGTCATGCGGTTTTC 1929204 30 100.0 35 .............................. TATTTCTTGCTATTTCATCGTAAGAAATTTTCTCA 1929139 30 100.0 38 .............................. ATACTTTTTCCTCAAGCTGCATTACCCATTACCTGCCT 1929071 30 100.0 36 .............................. AAAAGAGATGAATAAAATTCTTTATAAAAAATGGCA 1929005 30 100.0 36 .............................. TACGTTACCAGCAAATTATTAATACTTACATAAACC 1928939 30 100.0 37 .............................. AAGCAATTTCTGCAAGTTGTTTACTTTTGAATGATTC 1928872 30 100.0 36 .............................. CATTAAGATGGTCGAAGATGAAGAAGCAAACATGTA 1928806 30 100.0 37 .............................. CAATGGGGCTATTGTATGTACAAATAGCTATTTTACT 1928739 30 100.0 36 .............................. CCAAAAGTGCAATGAGATACCCAGCACCAGAAAGAA 1928673 30 100.0 36 .............................. GCATAAACTTTGCCCAGTACTCCCTGGCTTCTTCTT 1928607 30 100.0 38 .............................. GCGGAACAGTAGAAGATAATAATATTATGCTAAACTGG 1928539 30 96.7 37 .................T............ ACTCCAAGAAGTGAATATATGAAAGATTACGATTGGA 1928472 30 100.0 36 .............................. TTGACACCCTTCACTGTTTGCAACATTTCCACAAAA 1928406 30 100.0 37 .............................. GAACGTTTACCAATTGACCTTGCACGATTGGGGCGAG 1928339 30 100.0 36 .............................. CTAAAAGGGGGTTAACAAGGTGCAGTTAGCATTAAG 1928273 30 100.0 35 .............................. TCAGTAACAAAAAGACAAATCATATCATCACCAGA 1928208 30 100.0 37 .............................. AATGATATTTCAATTGGAAACTTTACAGTCTACCGTA 1928141 30 100.0 38 .............................. AAAGGCGAGGTGTTCAAAAAGCCGCTGATTGTACTTGG 1928073 30 100.0 35 .............................. AAACTATGGCAGGCCGAAGGATTAAAGCCACCTAA 1928008 30 100.0 36 .............................. ATCCTTACCGCCTGCCTGCTTACCTCAAACTCCCAT 1927942 30 100.0 35 .............................. ATATAGTCGCAGACATGGATTTAGACCACAACCTG 1927877 30 100.0 35 .............................. AAAAATTATTTGAGGATTATGGTTATAATGTAGAA 1927812 30 100.0 36 .............................. TTGCTTATTAGCTTCTAATTCATTTACTATATTCTG 1927746 30 100.0 36 .............................. GCCAAACCTTCCCTAAAAACTGCTTAAACATATCAG 1927680 30 96.7 39 .....................A........ GAGGTAAAAGAAAAGAAAACCAAGAAAGCCGCTGGCGAA 1927611 30 100.0 38 .............................. ACTATAATTTCACCTTGTCGGTTTGTGAAAGTCTTTAT 1927543 30 100.0 35 .............................. TACGGCCGAATACCGTCCAATACATACCCAACTTT 1927478 30 100.0 36 .............................. CACACCCGGCATCGGGAGCTGTATCCTGCCGGCATG 1927412 30 100.0 36 .............................. CAGAAAGACGTCCAAGAACGAGATAAATACGGTAGG 1927346 30 100.0 37 .............................. TTCTGCCAATCAATTCGGTCTTGTTTTCGCCAGCTCT 1927279 30 100.0 36 .............................. TCAAGAATATCAACTCTCAGCACCTCCGGGTGGAAT 1927213 30 100.0 36 .............................. CCTCCCACGTTTATACGGCCGTGGTCCACCGACTTT 1927147 30 100.0 36 .............................. CTGAAAATTATTTCCAGCCCTGAAACGCAGATTTTG 1927081 30 100.0 36 .............................. ATTTAACTGGCAATAAATCGTGTTGTTTAATCAATT 1927015 30 100.0 37 .............................. CTTGAATAATCCACTCTCCTGCTGGTCAGTTCAAAAA 1926948 30 100.0 36 .............................. GCCAGGAAAAACGCGGACTATGGCGACAGCTACCAC 1926882 30 100.0 36 .............................. TTGCATGCTGATAGTCTTGTTTAAGCAGTCCATATG 1926816 30 100.0 35 .............................. CAAGGTGTTAACTTTACTGATTTATTGGCAAATGC 1926751 30 100.0 36 .............................. TCTTCTAAATTTAATGAAGAAAACCAGTCCTTCAAT 1926685 30 100.0 36 .............................. AAGAAAGAAATATAATAAGCGATATACCTAAATTCC 1926619 30 100.0 37 .............................. CTAAATACCCATTTTCCTGCTCTAAATAGACTCTTAC 1926552 30 100.0 37 .............................. TTCACCGACCTTGCTTTGCGGTCCGGAGGTGATTTTG 1926485 30 100.0 37 .............................. CTCAAACTGACATGACCGACCAGTATGGGAAAACCAA 1926418 30 100.0 36 .............................. TTTCAAAGTCCTCCGCCAACTTCTGGATTGCTTCAG 1926352 30 93.3 36 ...............A.T............ AAGCAATTCGCTTAATAACATGATTATCATCCTCCT 1926286 30 90.0 0 ........G......A.T............ | ========== ====== ====== ====== ============================== ======================================= ================== 59 30 97.2 36 GTTTTAATCGAACCATTCTGGGATTGAAAC # Left flank : CGGTTTTGGAAGGAGAAATTACCGAAGCAAATTTTCGCCGGTTAAAAGGAGAGCTTTCGAGGATAATTAATCAAGATGAGGATTCAGTGCTGTTTTATATTTTTGGTTCCATGAAATATTCTTCCCGGGAGCTTTTGGGTATTCAAAAAGGAGGTGAAACCAATATGCTTTAATTATGCCTTTTATGTGAAATATTGAACTTAGCTTAGTGAGGTCGACGAAAAAAGTGCATATACTATGAATAAATGCCTTAATAAGGCCAAAATTTCACCGGTAAAACGAAAAATTATGCAAATAAACTAAAAAATATACAAATTTTTTCGTCGACCTGCGGTTACCCCCAAAATCCAGGAAGGTCGACGAAAGGGCAAAAATAGCCTTTAAGCCTTGAGAATTAAGCGTTTAGTGGAAATTTACCACTATGCACCAATATTAACATTGAAAAATGTAAACTTCTTCTTTCTTTAAAAATCTTTTTCTTTTATAATTAATTATGGGTT # Right flank : GTATGGCCCTACAGCTTTTTTAATACGTGTGAACTTGCAAATTATTTGGGCACCAATATTTCAAAATAAAATAGCATAGAAGTAGGCTGTAATTTGCAAAAATTGCAAATTATTTTGGTAGGTCAGTATAACCTTTTGCAAAATATCACGGTATTTTAGCAGAGAAAAATAAAAAGAAAACCGGCCGCATAAGTGCGACCGGGCAAAATTAGAAACCAGTATCCTGAGCAGCTAACCTAACTACCTCAGCATCAATGATTTCCTTTTTAGCCTGGAAACCATAAAGCAAGCAATGAGTGGCGAGTTTATTGATAAGCCGGGGCCACCCCCGGGATAAAGAGGCAATAGCTTCGATGGCAGGCTCGGAAAAAATATTATGGTTAGCTCCTGCAAGCTCCATATGATGCTGGGTGTAGCCTGCAACCTCTTCCCGGGTTAAAGGCTTAACCTTATAACTCATGGCGATTCTTTGGGCAAGAGGCCTTTTCTGATTTAAGGTA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGAACCATTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-42] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 2 1949573-1944006 **** Predicted by CRISPRDetect 2.4 *** >NC_007503.1 Carboxydothermus hydrogenoformans Z-2901, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1949572 30 100.0 36 .............................. ATGGCAAATATTGCTGAAAGCGCAGTCTGGGAAAGC 1949506 30 100.0 36 .............................. TGCCATACGGTGACGATACGATTGAGACACGCCGCT 1949440 30 100.0 37 .............................. TAATTTCCTGTTCCATTTCTGCGCCTCCTTCCAAAAA 1949373 30 100.0 39 .............................. AGCGATTTCAGGGCTCACTTCCCTTATTATTGAGCCCTC 1949304 30 100.0 37 .............................. CATATAGAACATATATCTACATTTTTTTGACAGTCCT 1949237 30 100.0 36 .............................. AAGATGGAAATTCAATTTCTAAAAATTTGATTATAT 1949171 30 100.0 37 .............................. AAATACCTAAACGATTTACTTCATTAACTACTTCAAA 1949104 30 100.0 35 .............................. TATAGCAACAATTTCCAAATATTCTTCTTCGGTAA 1949039 30 100.0 38 .............................. ATGACTCGCTCATATCCAATGCTTTTTTCTCGGTTATT 1948971 30 100.0 36 .............................. GCATCGGACAATCCAGAAGGTATATCAGTAGGGGTA 1948905 30 100.0 36 .............................. CCGCATTCAACATCGTGGCTGGCTCTAACATGGCGA 1948839 30 100.0 38 .............................. TAAAACTTTAAGGCAGGGATAAATAATAAGACGGTTGG 1948771 30 100.0 38 .............................. CAAAGAGAAAGCAGGTGGGAAGTATGGAAATTTTGCCT 1948703 30 100.0 37 .............................. ACCCGCTTACTTAGCGGGTTATTGTTTTATTTATGCT 1948636 30 100.0 36 .............................. CCATTGTATCCCATATATCTCTCGCAAAAGCTTTCA 1948570 30 100.0 36 .............................. TCTTTAACATCGTCATATAATAAATATAGCAATTTA 1948504 30 100.0 38 .............................. CATAACTATCTACGCCTACCTGTAAGGCCATAAGGTTA 1948436 30 100.0 35 .............................. CGGTGGAATGTGTCGGCTGATGTAATACTGACCGG 1948371 30 100.0 38 .............................. ATCGAAAATATGCCTTGGAATGGAATAATATTTTTCAC 1948303 30 100.0 36 .............................. AAACCACTACCGGCTACAACGCATACGGAGAACCAG 1948237 30 100.0 39 .............................. CGTGTCGTTCTTTTTCGAACGACGCTTTTTGTTCTCAAG 1948168 30 100.0 37 .............................. AATAGCATCTTTCTTTTTACCTATTACCTTTACACCT 1948101 30 100.0 35 .............................. CCCACCTCGCAAAATCTCGCTGATATCTGTCTTTT 1948036 30 100.0 37 .............................. TCGGGCAAGCTCTCTGGCTTCTGGGTCTTCGACAATT 1947969 30 100.0 36 .............................. ACGCCGGAGGAGTGCAGAATAGTAAAGCAATTCTTT 1947903 30 100.0 37 .............................. ACATTCAGCAGGATTTCCAGCAAAAGCAGCAACAAAA 1947836 30 100.0 38 .............................. TAAATAGCTTGTCAGTAAAGACAGGCTATTTTGTCCCG 1947768 30 100.0 37 .............................. TGGAGCTTGCGCGTCAAAAGATGAAAATGGCAGGATA 1947701 30 100.0 37 .............................. TCGAAGAGGGCGACGTGGTGATAAAAGCGCACCACCA 1947634 30 100.0 36 .............................. AAATTCTCGCAATTTTCACCCTCACATCTATCTCTA 1947568 30 100.0 38 .............................. CGGCGAACACTATATCGCCGCAATAAAAGAACACCCCG 1947500 30 100.0 37 .............................. AACCCAGCTATTGTTAAAAATACTGCAACAGCCGAAA 1947433 30 100.0 37 .............................. TATGGTCAAGAAGAAAGAAGTTGTTGCTTTTTCGGTT 1947366 30 100.0 37 .............................. ATTAAAGGTTATGCGGTTGCATTTGAAGATGTTGAGG 1947299 30 100.0 37 .............................. TTGCTCGGGCTCTGCTGCGAAGCCAATACCGCAAGCC 1947232 30 100.0 34 .............................. TCCCCTCCCGTTCCGCAAGCTGAAACAACTCCAT 1947168 30 100.0 36 .............................. TCCTGGACAAGCTTTGAAAGTACCTCTTGGGAGGAA 1947102 30 100.0 37 .............................. TGAAGGAGCCTACCGGGAACATAAAACATGTCTTTTT 1947035 30 100.0 37 .............................. ACTCCTTCTGCAACAGTAGCACTATCACTTATTACAC 1946968 30 100.0 36 .............................. AGTGGCCCAATCTTTCTGAGATTACCTTTATATCCA 1946902 30 100.0 36 .............................. GGTAGACGAAGAGAAAAACATCGAGAGCGGATTCTA 1946836 30 100.0 37 .............................. TCGTTTCCACTGCGCTTTTCTAAATGCCCACTGGCCA 1946769 30 100.0 36 .............................. TTCAATATTTACGAAGCCGTTTAATTTTATTATAAG 1946703 30 100.0 37 .............................. GCGTCTCATATCGCTTTAACCACTTCTCAAGTGCCTC 1946636 30 100.0 35 .............................. ACAGGAAATTCTTCCAGCAGGAAAGCTCCAACCGG 1946571 30 100.0 34 .............................. CGAGAATAGCAGTTGGTGATGGGGAATTAGGCGG 1946507 30 100.0 37 .............................. TCTTAAAAACCTTGACAAAACTTTTGTCGAAATGCCT 1946440 30 100.0 37 .............................. TTTCAGAAGCTTCTTCTAATCTCTTTTCTGCCTCCAA 1946373 30 100.0 39 .............................. GGGAATGGGTTGACGGTCTGAAGCTACATGATGGCAAGA 1946304 30 100.0 37 .............................. ACGGCTACTGTCGGCCTTACGGCCGAGCCTTGACAAG 1946237 30 100.0 37 .............................. TATGCATCGGTCAAAGTGTACTTCTGGCAAGAACGAT 1946170 30 100.0 39 .............................. TTTAGATGGGAAACCTCTTGTACCAGTTTCTAATTGAGA 1946101 30 100.0 37 .............................. AAGTCCTCCTCGGCTTTTTTTGCCGAGGTAGCGGCAG 1946034 30 100.0 38 .............................. TTAGCAGGACAGGCCGAAAATGCCTGGAAGTGGTAAAG 1945966 30 100.0 35 .............................. AGCATCATCGCTTTCCAACCACAGTTCATTTTCTT 1945901 30 100.0 36 .............................. CCAGAGAATACCTTTGAATGGGCAAGTTACACATCA 1945835 30 100.0 36 .............................. TGTAAAAGAATTAATGAAGCATATCAAAGGACCGGA 1945769 30 100.0 35 .............................. AGCATCATCGCTTTCCAACCACAGTTCATTTTCTT 1945704 30 100.0 36 .............................. CCAGAGAATACCTTTGAATGGGCAAGTTACACATCA 1945638 30 100.0 36 .............................. TGTAAAAGAATTAATGAAGCATATCAAAGGACCGGA 1945572 30 100.0 36 .............................. TATGCAGGTTTATCCCCTTCACGGTGATATTCTCCG 1945506 30 100.0 37 .............................. AGCGATGCCCCAACGTGGCTCTACCATACTTAACCCG 1945439 30 100.0 39 .............................. TCGCAATTGGCCAGAAATGGCCTCCACCGACGGAACTGG 1945370 30 100.0 38 .............................. CCCTAAAACTTCTCTTTTTGCGTCCCTTTTGCTCCCTT 1945302 30 100.0 35 .............................. TAGACGAAGCAGATGGAGCTCCGGACTGGCGGTGG 1945237 30 100.0 38 .............................. AGTATCTCCTCCAGCGGTACGATCGAGGTGGGCATTAT 1945169 30 100.0 37 .............................. TGGCCTACTCCAACAACGCAGGAAGTAGAACACCCCA 1945102 30 100.0 37 .............................. TCCCAGTGAAAGCATCTTGGCTGCTTCCTTCACACTG 1945035 30 100.0 37 .............................. TTTTCACGTGGTGCAAGAGTGGTACAAGCGGAGAAAA 1944968 30 100.0 36 .............................. CAGGATTGATTAACCGGGAAAAGACTATCTTAGCAA GT [1944947] 1944900 30 100.0 36 .............................. AATTAATTCTTTTAAAGTCATTATATATATACCCCC 1944834 30 100.0 39 .............................. TCGCAATTGGCCAGAAATGGCCTCCACCGACGGAACTGG 1944765 30 100.0 37 .............................. GATTATATTTGCTTACATAAACCATTTTTAGCTGTGG 1944698 30 100.0 35 .............................. ATAATGATGTTTTTTGTTTGGGTACTTACAGCTTA 1944633 30 100.0 37 .............................. CAAAATCGTCAAAAAAGTTAAGCATAGCTTTTAAATT 1944566 30 100.0 35 .............................. ATAATGATGTTTTTTGTTTGGGTACTTACAGCTTA 1944501 30 100.0 37 .............................. CAAAATCGTCAAAAAAGTTAAGCATAGCTTTTAAATT 1944434 30 100.0 33 .............................. GTGAAATACAGAAGAACCCGAAGGATGGCTTTT 1944371 30 100.0 36 .............................. GGCCATGGGAATAGCGGCGAAATTTTCTCCGGGGAG 1944305 30 100.0 38 .............................. TAATGAAAGAACTGAAGTACTCTGCAAAGTCCTCGGCT 1944237 30 100.0 38 .............................. AATGGCAAAAAGCTTATCTTTGAAGTATACCGAGGACT 1944169 30 100.0 38 .............................. TTCTACATTCCCGCGAGCAAGTCTTTTGATGCGGCTGC 1944101 30 100.0 36 .............................. TTCTGTAGGCGGTGTTTAGTATGGCTATAAAAGCTT 1944035 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 84 30 100.0 37 GTTTTAATCGAACCAATCTGGGATTGAAAC # Left flank : GGAGCTTATTATGCCATGAATCTTGATGGGGGAGCTTCCAGCGGCCTTTATGTAAACGGCAAGTACCTAACCAAACCCGGGAGGCTTTTGTCAAATGCACTGGTGATTTCGTTGAATTAAGATTAATCAATTAAAATTATTTTTTTGGAAAAAGAGGTAAGAGTAAGAAGTTTTAATCATGCCATTTATGTGAAATACTGAACATTTCTTTAGGAAGTCGACGAAAAGATTACATAAACCATAAATAAGCAACTTAATTCAACCGGAGTTTACCGATAAAAAATGAATATATATGCAATCAAAGTAAATATTATACCATGTTTTTCGTCGACCTGCGGTTACCCCAAAAATCCCGGGAGGTCGACGAAAGGGTGAAAATAAACTTTAAACTTTGAAAAATAAGCGTTCAGTTGAAATTTACCACTATGCACCAATATTCACATGAAAAATGTAAACTTCTTCTTTCTTTAAAAATCTTTTTCTTTTATAATTAATTATGG # Right flank : AAGCAGCAGCCGGATTAAATAAAGAAGCCGAAACAAAGTAAGGCAAAAAGCTGGAAAGAGCGGGTGCGAGAGGCCTTTGGGAAGAACCCATTACAAAAGACTATATATATTGAATTTATGGGGGTGAAATGAGTGGATGGTGTCAATTTTTTGATAAAAAAATTGAATAATTATCCTGTAATTAAGGTTTCTTTGTTAGTTATAATAGTTGCTCTTGTAGTATTAAGCGGAATAAAAATAGGAGAAATAGCAGGAAAATTTATGTATTATATACTCGTAAAATAAATGTGGGTGGAGACATTGGTGCAGTTACCGATATATGCGGTTGGAACGGTAGGTGCTGTATAGCTTGAGCCATAGAAATTAACAAGCCAATTGTTTTTAAGTTTAAAACAATAGGTATTTTTAATAATTTAAAAAGGCTTTTCGCTAAATAGTATGGGTAAAAGCTTCTGATGTGGTATTATCACATTAGAAGTGATGAGAACGAGAGATATCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGAACCAATCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //