Array 1 11002-11335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXC010000059.1 Erwinia amylovora strain 1400-2 Ea_1400-2_contig_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11002 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 11063 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 11124 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 11185 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 11246 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 11307 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CAAGCGATCAACCTGTTTTTCAGTAGGTTTAAGTGTTCCCCGCGTGAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-1542 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXC010000054.1 Erwinia amylovora strain 1400-2 Ea_1400-2_contig_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 112 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 173 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 234 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 295 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 356 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 417 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 478 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 539 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 600 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 661 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 722 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 783 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 844 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 905 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 966 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 1027 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 1088 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 1149 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 1210 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 1271 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 1332 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 1393 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 1454 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 1515 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.9 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GTGAGCGGGGATAAACCGACAAAAGACAACACCCCCCTTACCCCCCCACGG # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12450-14066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXC010000054.1 Erwinia amylovora strain 1400-2 Ea_1400-2_contig_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12450 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 12511 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 12572 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 12633 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 12694 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 12755 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 12816 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 12878 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 12939 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 13000 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 13061 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 13122 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 13183 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 13244 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 13305 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 13366 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 13427 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 13489 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 13550 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 13611 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 13672 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 13733 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 13794 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 13855 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 13916 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 13977 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 14038 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCTCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 23530-23858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXC010000054.1 Erwinia amylovora strain 1400-2 Ea_1400-2_contig_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23530 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 23590 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 23650 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 23710 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 23770 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 23831 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //